Experiment set3S225 for Rhodanobacter sp000427505 FW510-R12

200 most important genes:

gene	name	fitness	t score	description
LRK53_RS05125		-3.3	-6.4	potassium transporter Kup
LRK53_RS04265		-2.8	-3.3	phosphoribosylaminoimidazolesuccinocarboxamide synthase
LRK53_RS16900		-2.7	-3.7	ribose-5-phosphate isomerase RpiA
LRK53_RS07510		-2.4	-6.4	TonB-dependent siderophore receptor
LRK53_RS05870		-2.4	-11.7	ATP-binding protein
LRK53_RS14785		-2.3	-1.6	5-(carboxyamino)imidazole ribonucleotide synthase
LRK53_RS11455		-2.2	-3.6	NfuA family Fe-S biogenesis protein
LRK53_RS04070		-2.1	-1.3	NADP-dependent malic enzyme
LRK53_RS11155		-2.0	-2.7	glutamine-hydrolyzing GMP synthase
LRK53_RS05865		-1.9	-2.9	response regulator transcription factor
LRK53_RS16520		-1.9	-3.1	HAMP domain-containing histidine kinase
LRK53_RS09265		-1.9	-1.3	GntR family transcriptional regulator
LRK53_RS02580		-1.9	-3.8	c-type cytochrome
LRK53_RS04190		-1.9	-3.7	dihydrolipoyl dehydrogenase
LRK53_RS14790		-1.9	-2.1	5-(carboxyamino)imidazole ribonucleotide mutase
LRK53_RS12250		-1.8	-7.7	Mth938-like domain-containing protein
LRK53_RS17570		-1.8	-2.1	alpha/beta hydrolase
LRK53_RS15200		-1.8	-1.6	flagellar protein FlgN
LRK53_RS09520		-1.7	-1.7	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
LRK53_RS06715		-1.7	-2.3	[protein-PII] uridylyltransferase
LRK53_RS10775		-1.7	-2.4	hypothetical protein
LRK53_RS09595		-1.7	-1.6	hypothetical protein
LRK53_RS03065		-1.7	-1.2	4-hydroxybenzoate octaprenyltransferase
LRK53_RS04185		-1.7	-3.9	dihydrolipoyllysine-residue acetyltransferase
LRK53_RS03695		-1.7	-9.3	glutamate--cysteine ligase
LRK53_RS11425		-1.6	-2.4	RnfH family protein
LRK53_RS13565		-1.6	-1.7	isocitrate dehydrogenase
LRK53_RS03545		-1.5	-1.9	DUF2249 domain-containing protein
LRK53_RS05760		-1.5	-1.1	chemotaxis protein CheW
LRK53_RS16870		-1.5	-1.3	UPF0149 family protein
LRK53_RS04075		-1.4	-10.0	pyruvate dehydrogenase (acetyl-transferring), homodimeric type
LRK53_RS01235		-1.4	-1.8	monovalent cation:proton antiporter-2 (CPA2) family protein
LRK53_RS09240		-1.4	-1.8	DUF4386 domain-containing protein
LRK53_RS11790		-1.4	-1.3	cbb3-type cytochrome c oxidase subunit 3
LRK53_RS07450		-1.4	-0.9	50S ribosomal protein L19
LRK53_RS03745		-1.4	-7.2	peptidoglycan DD-metalloendopeptidase family protein
LRK53_RS07490		-1.3	-3.5	phytoene synthase
LRK53_RS03700		-1.3	-1.0	transcription termination factor Rho
LRK53_RS06035		-1.3	-1.2	helix-turn-helix domain-containing protein
LRK53_RS11285		-1.3	-1.7	tRNA-binding protein
LRK53_RS02285		-1.3	-0.9	oxygen-dependent coproporphyrinogen oxidase
LRK53_RS13525		-1.3	-3.5	ferredoxin family protein
LRK53_RS14770		-1.3	-1.5	SDR family NAD(P)-dependent oxidoreductase
LRK53_RS05175		-1.3	-1.6	7-cyano-7-deazaguanine synthase QueC
LRK53_RS06925		-1.2	-1.4	MtnX-like HAD-IB family phosphatase
LRK53_RS12800		-1.2	-1.8	DUF4190 domain-containing protein
LRK53_RS01325		-1.2	-1.6	magnesium-translocating P-type ATPase
LRK53_RS05295		-1.2	-10.7	phosphoribosylformylglycinamidine synthase
LRK53_RS09830		-1.2	-1.5	phosphoglycerate mutase
LRK53_RS17900		-1.1	-1.5	dUTP diphosphatase
LRK53_RS04370		-1.1	-5.3	cystathionine gamma-synthase
LRK53_RS16345		-1.1	-1.2	hypothetical protein
LRK53_RS13510		-1.1	-5.5	polynucleotide adenylyltransferase PcnB
LRK53_RS05565		-1.1	-0.7	H-NS histone family protein
LRK53_RS03370		-1.1	-1.1	YifB family Mg chelatase-like AAA ATPase
LRK53_RS08310		-1.1	-8.4	chorismate synthase
LRK53_RS09435		-1.1	-0.7	malate dehydrogenase
LRK53_RS17130		-1.1	-9.9	energy transducer TonB
LRK53_RS00865		-1.0	-0.8	alpha/beta hydrolase
LRK53_RS10040		-1.0	-1.6	DUF2282 domain-containing protein
LRK53_RS11025		-1.0	-2.1	hypothetical protein
LRK53_RS04390		-1.0	-1.6	glycosyltransferase family 2 protein
LRK53_RS07020		-1.0	-1.7	HlyD family efflux transporter periplasmic adaptor subunit
LRK53_RS05110		-1.0	-2.7	YebC/PmpR family DNA-binding transcriptional regulator
LRK53_RS15715		-1.0	-8.9	HPr(Ser) kinase/phosphatase
LRK53_RS03010		-1.0	-1.1	hypothetical protein
LRK53_RS09655		-1.0	-5.1	ribonuclease R
LRK53_RS04815		-1.0	-1.9	IS5 family transposase
LRK53_RS07635		-1.0	-1.3	FUSC family protein
LRK53_RS10270		-1.0	-1.2	alpha/beta fold hydrolase
LRK53_RS00690		-1.0	-1.3	N-acetylglucosamine-6-phosphate deacetylase
LRK53_RS01570		-1.0	-1.3	DNA polymerase I
LRK53_RS18025		-1.0	-1.3	hypothetical protein
LRK53_RS06500		-1.0	-1.0	disulfide bond formation protein B
LRK53_RS05725		-1.0	-5.9	glutathione synthase
LRK53_RS01585		-1.0	-1.3	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
LRK53_RS19175		-1.0	-1.1	hypothetical protein
LRK53_RS05060		-1.0	-1.4	hypothetical protein
LRK53_RS00345		-0.9	-2.3	sorbitol dehydrogenase family protein
LRK53_RS14725		-0.9	-1.7	DUF2249 domain-containing protein
LRK53_RS03720		-0.9	-2.3	permease-like cell division protein FtsX
LRK53_RS09730		-0.9	-2.2	ATP-dependent Clp protease ATP-binding subunit ClpA
LRK53_RS06945		-0.9	-2.8	beta-ketoacyl-[acyl-carrier-protein] synthase family protein
LRK53_RS11780		-0.9	-0.9	cytochrome-c oxidase, cbb3-type subunit I
LRK53_RS15705		-0.9	-4.7	RNA polymerase factor sigma-54
LRK53_RS15805		-0.9	-1.9	NAD(P)-binding domain-containing protein
LRK53_RS09290		-0.9	-1.8	hypothetical protein
LRK53_RS01090		-0.9	-2.3	D-aminoacyl-tRNA deacylase
LRK53_RS06545		-0.9	-1.4	TIGR02099 family protein
LRK53_RS03625		-0.9	-1.2	ABC transporter ATP-binding protein
LRK53_RS15060		-0.9	-0.8	flagellar export protein FliJ
LRK53_RS19005		-0.9	-2.7	phosphoadenosine phosphosulfate reductase family protein
LRK53_RS05860		-0.8	-1.6	hypothetical protein
LRK53_RS02135		-0.8	-1.7	hypothetical protein
LRK53_RS03630		-0.8	-5.1	fatty acid desaturase
LRK53_RS08910		-0.8	-1.6	endolytic transglycosylase MltG
LRK53_RS03715		-0.8	-0.6	cell division ATP-binding protein FtsE
LRK53_RS06175		-0.8	-1.1	acylphosphatase
LRK53_RS06820		-0.8	-2.0	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
LRK53_RS05105		-0.8	-2.9	alpha/beta hydrolase
LRK53_RS00925		-0.8	-2.4	Na+/H+ antiporter subunit E
LRK53_RS01745		-0.8	-3.7	TetR/AcrR family transcriptional regulator
LRK53_RS07695		-0.8	-1.9	enoyl-CoA hydratase-related protein
LRK53_RS09090		-0.8	-4.3	polyribonucleotide nucleotidyltransferase
LRK53_RS04305		-0.8	-2.9	hypothetical protein
LRK53_RS13380		-0.8	-1.4	hypothetical protein
LRK53_RS18120		-0.8	-1.5	energy transducer TonB
LRK53_RS14110		-0.8	-1.0	GNAT family N-acetyltransferase
LRK53_RS16860		-0.8	-0.7	cytochrome bd-I oxidase subunit CydX
LRK53_RS17580		-0.8	-2.3	GNAT family N-acetyltransferase
LRK53_RS04275		-0.7	-2.0	co-chaperone DjlA
LRK53_RS02455		-0.7	-1.5	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG
LRK53_RS10245		-0.7	-2.2	FAD-binding oxidoreductase
LRK53_RS17395		-0.7	-2.9	PepSY domain-containing protein
LRK53_RS06930		-0.7	-1.0	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
LRK53_RS16300		-0.7	-1.4	16S rRNA (cytidine(1402)-2'-O)-methyltransferase
LRK53_RS13625		-0.7	-0.8	carbon storage regulator CsrA
LRK53_RS06845		-0.7	-2.0	preprotein translocase subunit YajC
LRK53_RS09620		-0.7	-2.5	hypothetical protein
LRK53_RS03105		-0.7	-3.7	3-isopropylmalate dehydratase small subunit
LRK53_RS01530		-0.7	-0.6	YiiD C-terminal domain-containing protein
LRK53_RS09475		-0.7	-4.4	bifunctional 2-methylcitrate dehydratase/aconitate hydratase
LRK53_RS18430		-0.7	-2.3	hypothetical protein
LRK53_RS01320		-0.7	-1.8	hypothetical protein
LRK53_RS11035		-0.7	-1.1	major capsid protein
LRK53_RS12700		-0.7	-1.3	DUF3293 domain-containing protein
LRK53_RS05840		-0.7	-3.2	HAMP domain-containing histidine kinase
LRK53_RS13020		-0.7	-0.9	sulfur transferase domain-containing protein
LRK53_RS01695		-0.7	-2.3	zinc-finger domain-containing protein
LRK53_RS16505		-0.7	-3.4	methylenetetrahydrofolate reductase [NAD(P)H]
LRK53_RS01110		-0.7	-4.8	TonB-dependent receptor
LRK53_RS16720		-0.7	-5.6	citrate synthase
LRK53_RS10260		-0.7	-1.4	heme-binding protein
LRK53_RS12365		-0.7	-2.6	patatin-like phospholipase family protein
LRK53_RS14290		-0.7	-1.3	penicillin acylase family protein
LRK53_RS07485		-0.6	-2.4	phosphoglycolate phosphatase
LRK53_RS08795		-0.6	-1.0	MBL fold metallo-hydrolase
LRK53_RS14795		-0.6	-2.3	hypothetical protein
LRK53_RS05740		-0.6	-0.8	chemotaxis protein CheW
LRK53_RS04440		-0.6	-1.9	electron transfer flavoprotein subunit beta/FixA family protein
LRK53_RS00310		-0.6	-1.7	P-II family nitrogen regulator
LRK53_RS12175		-0.6	-3.0	sulfate ABC transporter permease subunit CysT
LRK53_RS07395		-0.6	-1.5	iron-sulfur cluster assembly accessory protein
LRK53_RS09665		-0.6	-2.2	hypothetical protein
LRK53_RS11925		-0.6	-1.5	hypoxanthine-guanine phosphoribosyltransferase
LRK53_RS03120		-0.6	-2.5	2-isopropylmalate synthase
LRK53_RS17860		-0.6	-1.0	peptidoglycan DD-metalloendopeptidase family protein
LRK53_RS14640		-0.6	-0.8	MoaD/ThiS family protein
LRK53_RS07200		-0.6	-1.2	hypothetical protein
LRK53_RS03620		-0.6	-2.1	ABC transporter permease
LRK53_RS01980		-0.6	-2.1	very short patch repair endonuclease
LRK53_RS13045		-0.6	-2.7	hypothetical protein
LRK53_RS01845		-0.6	-3.3	rubredoxin
LRK53_RS17625		-0.6	-0.8	benenodin family lasso peptide
LRK53_RS18675		-0.6	-1.0	DNA polymerase Y family protein
LRK53_RS11190		-0.6	-1.2	type IV pilus biogenesis/stability protein PilW
LRK53_RS11005		-0.6	-1.2	Tn3 family resolvase
LRK53_RS11805		-0.6	-0.4	heavy metal translocating P-type ATPase
LRK53_RS15645		-0.6	-1.5	AI-2E family transporter
LRK53_RS06570		-0.6	-0.4	DUF615 domain-containing protein
LRK53_RS15250		-0.6	-3.0	membrane assembly protein AsmA
LRK53_RS19135		-0.6	-1.5	hypothetical protein
LRK53_RS14900		-0.6	-1.0	methyl-accepting chemotaxis protein
LRK53_RS08070		-0.6	-1.8	DUF411 domain-containing protein
LRK53_RS08580		-0.6	-2.1	barstar family protein
LRK53_RS11185		-0.6	-0.5	DUF4115 domain-containing protein
LRK53_RS05770		-0.6	-2.5	hypothetical protein
LRK53_RS05170		-0.6	-0.8	7-carboxy-7-deazaguanine synthase QueE
LRK53_RS04100		-0.6	-1.0	DUF3247 family protein
LRK53_RS10275		-0.6	-1.4	2-oxopent-4-enoate hydratase
LRK53_RS05675		-0.6	-1.9	YggT family protein
LRK53_RS02535		-0.6	-2.9	DUF481 domain-containing protein
LRK53_RS04590		-0.6	-3.2	TetR/AcrR family transcriptional regulator
LRK53_RS17725		-0.6	-2.1	substrate-binding domain-containing protein
LRK53_RS07385		-0.6	-2.7	MalM family protein
LRK53_RS12280		-0.6	-1.4	tRNA pseudouridine(13) synthase TruD
LRK53_RS16485		-0.6	-1.4	GIY-YIG nuclease family protein
LRK53_RS15725		-0.6	-4.7	PTS fructose transporter subunit IIA
LRK53_RS04755		-0.6	-2.8	glutaredoxin family protein
LRK53_RS07040		-0.6	-1.7	sensor histidine kinase
LRK53_RS04200		-0.5	-0.8	hypothetical protein
LRK53_RS05465		-0.5	-1.2	hemin uptake protein HemP
LRK53_RS09020		-0.5	-1.7	hypothetical protein
LRK53_RS04315		-0.5	-4.0	pyridoxal-phosphate dependent enzyme
LRK53_RS17315		-0.5	-2.0	MgtC/SapB family protein
LRK53_RS00430		-0.5	-1.2	conjugal transfer protein TraR
LRK53_RS10470		-0.5	-0.7	MarR family winged helix-turn-helix transcriptional regulator
LRK53_RS18170		-0.5	-1.6	HAMP domain-containing histidine kinase
LRK53_RS03155		-0.5	-1.9	threonine synthase
LRK53_RS04475		-0.5	-2.7	electron transfer flavoprotein-ubiquinone oxidoreductase
LRK53_RS14910		-0.5	-1.2	chemoreceptor glutamine deamidase CheD
LRK53_RS11470		-0.5	-1.7	Rne/Rng family ribonuclease
LRK53_RS06535		-0.5	-1.9	ATP-binding protein
LRK53_RS04220		-0.5	-1.7	hypothetical protein
LRK53_RS00015		-0.5	-2.6	DNA replication/repair protein RecF
LRK53_RS09525		-0.5	-1.5	RNA chaperone Hfq
LRK53_RS18030		-0.5	-2.4	hypothetical protein
LRK53_RS02335		-0.5	-0.7	hypothetical protein
LRK53_RS00105		-0.5	-0.6	hypothetical protein
LRK53_RS12375		-0.5	-2.7	acetyl-CoA hydrolase/transferase family protein

Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in pH experiments