Experiment set3S216 for Escherichia coli ECRC98

Compare to:

Bas69

200 most important genes:

  gene name fitness t score description  
JDDGAC_07650 -4.2 -1.4 Membrane protein compare
JDDGAC_08295 cbpM -3.4 -1.2 chaperone modulator CbpM compare
JDDGAC_06675 -3.4 -2.0 hypothetical protein compare
JDDGAC_15250 -3.3 -1.2 Orf compare
JDDGAC_06565 ybcN -3.3 -1.1 Uncharacterized protein YbcN compare
JDDGAC_01695 ydiV -3.3 -2.5 anti-FlhDC factor compare
JDDGAC_02000 mepH -3.2 -2.2 peptidoglycan DD-endopeptidase MepH compare
JDDGAC_07050 -3.2 -1.1 Rha family transcriptional regulator compare
JDDGAC_11920 glnK -3.1 -1.8 P-II family nitrogen regulator compare
JDDGAC_08445 lomR -3.1 -1.1 Ail/Lom family protein compare
JDDGAC_14270 rsmH -3.0 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
JDDGAC_06230 fadR -2.9 -2.0 fatty acid metabolism transcriptional regulator FadR compare
JDDGAC_07825 -2.9 -1.0 Membrane protein compare
JDDGAC_27785 rusA -2.9 -1.0 crossover junction endodeoxyribonuclease RusA compare
JDDGAC_02200 lacZ -2.8 -1.6 Beta-galactosidase/beta-glucuronidase compare
JDDGAC_08145 dgcT -2.8 -1.6 putative diguanylate cyclase DgcT compare
JDDGAC_05095 pyrF -2.8 -3.4 orotidine-5'-phosphate decarboxylase compare
JDDGAC_00615 yecH -2.6 -1.9 Uncharacterized protein YecH compare
JDDGAC_14590 espX1 -2.6 -1.5 type III secretion system effector EspX1 compare
JDDGAC_25690 -2.6 -1.7 acyltransferase compare
JDDGAC_14760 trpR -2.5 -1.2 trp operon repressor compare
JDDGAC_03630 yneG -2.5 -1.2 Uncharacterized protein YneG compare
JDDGAC_06025 narJ -2.5 -0.9 nitrate reductase molybdenum cofactor assembly chaperone compare
JDDGAC_08140 eAL -2.5 -2.4 EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) compare
JDDGAC_29980 sopA -2.5 -1.2 plasmid-partitioning protein SopA compare
JDDGAC_03670 lsrC -2.4 -1.4 autoinducer 2 ABC transporter permease LsrC compare
JDDGAC_03285 -2.4 -1.1 DUF968 domain-containing protein compare
JDDGAC_28175 -2.4 -1.2 transcription factor compare
JDDGAC_07690 -2.4 -1.6 IS150 conserved protein InsB compare
JDDGAC_01870 fumD -2.4 -1.0 fumarate hydratase FumD compare
JDDGAC_06125 prfA -2.4 -1.1 peptide chain release factor 1 compare
JDDGAC_11390 tnp-ISAs1 -2.3 -1.4 ISAs1 family transposase compare
JDDGAC_25065 lepA -2.2 -1.5 translation elongation factor 4 compare
JDDGAC_04630 ydaU -2.2 -1.4 Uncharacterized protein YdaU compare
JDDGAC_03950 yddH -2.2 -2.0 Uncharacterized protein YddH compare
JDDGAC_04270 ydbL -2.1 -1.0 DUF1318 domain-containing protein compare
JDDGAC_00145 hiuH -2.1 -0.7 hydroxyisourate hydrolase compare
JDDGAC_00680 flhC -2.1 -1.4 flagellar transcriptional regulator FlhC compare
JDDGAC_10270 -2.1 -1.7 cruciferin compare
JDDGAC_29015 -2.1 -1.4 phage major capsid protein compare
JDDGAC_27065 yfaE -2.1 -1.0 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
JDDGAC_07640 -2.1 -1.0 DNA-binding protein compare
JDDGAC_13125 -2.0 -3.1 Putative bacteriophage protein compare
JDDGAC_05525 -2.0 -0.7 host nuclease inhibitor protein compare
JDDGAC_02060 ydhI -2.0 -1.0 Uncharacterized protein YdhI compare
JDDGAC_04875 ycjV -2.0 -2.2 Uncharacterized ABC transporter ATP-binding protein YcjV compare
JDDGAC_11375 -2.0 -1.0 hypothetical protein compare
JDDGAC_00890 lpxM -1.9 -2.3 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
JDDGAC_14420 surA -1.9 -2.3 peptidylprolyl isomerase SurA compare
JDDGAC_14625 nhaA -1.9 -7.4 Na+/H+ antiporter NhaA compare
JDDGAC_08035 lolD -1.9 -1.8 lipoprotein-releasing system ATP-binding protein LolD compare
JDDGAC_13240 ymfM -1.9 -2.0 Uncharacterized protein YmfM compare
JDDGAC_06700 -1.9 -1.3 DUF4222 domain-containing protein compare
JDDGAC_10295 -1.9 -1.3 hypothetical protein compare
JDDGAC_04080 hicA -1.9 -0.9 type II toxin-antitoxin system mRNA interferase toxin HicA compare
JDDGAC_06265 ycgN -1.9 -1.1 YcgN family cysteine cluster protein compare
JDDGAC_07025 -1.9 -1.3 DUF4406 domain-containing protein compare
JDDGAC_26765 yfbV -1.8 -0.9 UPF0208 membrane protein YfbV compare
JDDGAC_05820 eCs1768 -1.8 -0.8 DNA-binding protein compare
JDDGAC_05810 -1.8 -1.3 DNA-binding protein compare
JDDGAC_11595 ylbG -1.7 -1.6 Uncharacterized protein YlbG compare
JDDGAC_11035 lipB -1.7 -0.8 lipoyl(octanoyl) transferase LipB compare
JDDGAC_09510 -1.7 -2.9 hypothetical protein compare
JDDGAC_14440 apaH -1.7 -1.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
JDDGAC_14275 mraZ -1.7 -1.2 division/cell wall cluster transcriptional repressor MraZ compare
JDDGAC_09990 moaD -1.7 -0.8 molybdopterin synthase sulfur carrier subunit compare
JDDGAC_07755 -1.7 -1.7 putative hydrolase (HAD superfamily) compare
JDDGAC_18405 mnmG -1.7 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
JDDGAC_01080 mntP -1.7 -1.5 manganese efflux pump MntP compare
JDDGAC_03315 -1.7 -0.8 hypothetical protein compare
JDDGAC_05500 -1.7 -1.5 hypothetical protein compare
JDDGAC_04780 ogt -1.7 -1.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
JDDGAC_00825 nudB -1.6 -0.8 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_06575 emrE -1.6 -1.6 multidrug efflux SMR transporter EmrE compare
JDDGAC_05720 gp46 -1.6 -1.7 Phage GP46 family protein compare
JDDGAC_28670 yeeD -1.6 -1.1 Putative sulfur carrier protein YeeD compare
JDDGAC_01035 proQ -1.6 -2.6 RNA chaperone ProQ compare
JDDGAC_20780 frlD -1.6 -1.2 fructoselysine 6-kinase compare
JDDGAC_24200 ygbA -1.6 -1.6 nitrous oxide-stimulated promoter family protein compare
JDDGAC_03885 ompC2 -1.6 -1.9 Outer membrane porin C 2 compare
JDDGAC_05110 pgpB -1.6 -3.0 phosphatidylglycerophosphatase B compare
JDDGAC_05220 trpA -1.6 -1.9 tryptophan synthase subunit alpha compare
JDDGAC_17715 typA -1.6 -5.9 ribosome-dependent GTPase TypA compare
JDDGAC_28255 glpR -1.6 -2.7 transcriptional regulator compare
JDDGAC_11240 fepG -1.5 -2.1 iron-enterobactin ABC transporter permease compare
JDDGAC_27765 -1.5 -2.9 hypothetical protein compare
JDDGAC_24535 stpA -1.5 -1.3 DNA-binding protein StpA compare
JDDGAC_28830 -1.5 -2.5 Endonuclease compare
JDDGAC_01045 htpX -1.5 -2.5 protease HtpX compare
JDDGAC_04195 ydcF -1.5 -1.1 Protein YdcF compare
JDDGAC_24260 hycF -1.5 -1.2 formate hydrogenlyase subunit HycF compare
JDDGAC_07030 -1.5 -2.7 DNA-binding protein compare
JDDGAC_30190 tap -1.5 -1.0 RepA leader peptide Tap compare
JDDGAC_04370 rri1 -1.5 -0.8 phage tail protein compare
JDDGAC_14890 holD -1.4 -0.7 DNA polymerase III subunit psi compare
JDDGAC_05275 -1.4 -1.1 Mutator family transposase compare
JDDGAC_18020 corA -1.4 -2.3 magnesium/cobalt transporter CorA compare
JDDGAC_06295 minC -1.4 -1.1 septum site-determining protein MinC compare
JDDGAC_02195 uidR -1.4 -1.7 DNA-binding transcriptional regulator UidR compare
JDDGAC_22935 speA -1.4 -4.8 biosynthetic arginine decarboxylase compare
JDDGAC_08995 aspC -1.4 -2.3 aspartate transaminase compare
JDDGAC_09540 -1.4 -0.7 hypothetical protein compare
JDDGAC_02120 rsxE -1.4 -3.1 electron transport complex subunit RsxE compare
JDDGAC_08365 gfcE -1.4 -5.7 Putative polysaccharide export protein GfcE compare
JDDGAC_20930 yheO -1.4 -1.0 Uncharacterized protein YheO compare
JDDGAC_05645 -1.4 -0.9 tRNA-Xxx compare
JDDGAC_10765 ybfE -1.4 -2.8 LexA regulated protein compare
JDDGAC_17125 5S_rrna -1.4 -0.9 5S ribosomal RNA compare
JDDGAC_09535 artM -1.4 -3.2 arginine ABC transporter permease ArtM compare
JDDGAC_11935 decR -1.4 -1.7 DNA-binding transcriptional regulator DecR compare
JDDGAC_05555 -1.4 -1.3 Mu prophage protein compare
JDDGAC_23140 ygfB -1.4 -1.3 UPF0149 family protein YgfB compare
JDDGAC_15900 miaA -1.4 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
JDDGAC_01065 yebO -1.4 -0.7 Uncharacterized protein YebO compare
JDDGAC_17360 hslV -1.3 -2.1 ATP-dependent protease subunit HslV compare
JDDGAC_02170 add -1.3 -1.1 adenosine deaminase compare
JDDGAC_19100 -1.3 -0.8 Aec79 compare
JDDGAC_06075 chaB -1.3 -1.2 putative cation transport regulator ChaB compare
JDDGAC_07260 yceD -1.3 -1.2 23S rRNA accumulation protein YceD compare
JDDGAC_01715 ppsR -1.3 -1.9 posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR compare
JDDGAC_20700 igaA -1.3 -1.3 intracellular growth attenuator protein IgaA compare
JDDGAC_07395 dinI -1.3 -0.6 DNA damage-inducible protein I compare
JDDGAC_21730 nusA -1.3 -1.6 Transcription termination/antitermination protein NusA compare
JDDGAC_11280 hokE -1.3 -0.9 type I toxin-antitoxin system toxin HokE compare
JDDGAC_03860 yddM -1.3 -1.0 HigA family addiction module antitoxin compare
JDDGAC_03505 ydfJ -1.3 -1.2 Putative transporter YdfJ compare
JDDGAC_26120 cysM -1.3 -2.0 cysteine synthase B compare
JDDGAC_06135 lolB -1.3 -0.9 lipoprotein insertase outer membrane protein LolB compare
JDDGAC_29395 eCs1768 -1.3 -1.1 phage replisome organizer compare
JDDGAC_06305 minE -1.3 -0.6 cell division topological specificity factor MinE compare
JDDGAC_07385 yceB -1.3 -2.0 lipoprotein compare
JDDGAC_10475 tolQ -1.2 -1.3 Tol-Pal system protein TolQ compare
JDDGAC_29175 yeeT -1.2 -0.8 Uncharacterized protein YeeT compare
JDDGAC_14835 -1.2 -2.5 Glycine radical enzyme, YjjI family compare
JDDGAC_13250 -1.2 -1.2 XRE family transcriptional regulator compare
JDDGAC_14430 rsmA -1.2 -1.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA compare
JDDGAC_06140 ispE -1.2 -0.8 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
JDDGAC_04895 ycjR -1.2 -1.8 3-dehydro-D-guloside 4-epimerase compare
JDDGAC_29425 -1.2 -0.5 Prophage protein compare
JDDGAC_12565 yahO -1.2 -2.5 DUF1471 domain-containing protein compare
JDDGAC_18600 -1.2 -1.0 hypothetical protein compare
JDDGAC_19415 -1.2 -1.3 DUF3251 domain-containing protein compare
JDDGAC_05105 lapA -1.2 -1.0 lipopolysaccharide assembly protein LapA compare
JDDGAC_27000 yfaU -1.2 -1.8 2-keto-3-deoxy-L-rhamnonate aldolase compare
JDDGAC_19185 rpoZ -1.2 -0.7 DNA-directed RNA polymerase subunit omega compare
JDDGAC_17455 pfkA -1.2 -1.9 6-phosphofructokinase compare
JDDGAC_00235 rcsA -1.2 -1.0 transcriptional regulator RcsA compare
JDDGAC_04260 -1.1 -3.4 BigB-like protein compare
JDDGAC_04410 -1.1 -0.6 Tail completion protein Z compare
JDDGAC_03575 eamA -1.1 -1.2 O-acetylserine/cysteine exporter compare
JDDGAC_14610 -1.1 -1.3 hypothetical protein compare
JDDGAC_03645 tam -1.1 -0.6 trans-aconitate 2-methyltransferase compare
JDDGAC_00380 tcyJ -1.1 -2.4 cystine ABC transporter substrate-binding protein compare
JDDGAC_23090 argP -1.1 -2.4 DNA-binding transcriptional regulator ArgP compare
JDDGAC_00190 vsr -1.1 -1.5 VSPR family DNA mismatch endonuclease compare
JDDGAC_25410 yfgM -1.1 -1.2 ancillary SecYEG translocon subunit YfgM compare
JDDGAC_19215 rph -1.1 -2.8 ribonuclease PH compare
JDDGAC_06425 -1.1 -0.9 phage minor tail protein L compare
JDDGAC_26340 ypdK -1.1 -0.6 membrane protein YpdK compare
JDDGAC_13940 dksA -1.1 -4.1 RNA polymerase-binding protein DksA compare
JDDGAC_01465 ydjY -1.1 -2.6 Uncharacterized protein YdjY compare
JDDGAC_09985 moaE -1.1 -1.4 molybdopterin synthase catalytic subunit MoaE compare
JDDGAC_02140 rsxB -1.1 -0.6 electron transport complex subunit RsxB compare
JDDGAC_28890 -1.1 -1.0 Serine/threonine-protein phosphatase compare
JDDGAC_05650 gpG -1.1 -1.8 phage virion morphogenesis protein compare
JDDGAC_21265 yhdV -1.1 -1.9 Uncharacterized protein YhdV compare
JDDGAC_21125 yhdN -1.1 -1.3 Uncharacterized protein YhdN compare
JDDGAC_03845 sra -1.1 -1.0 stationary-phase-induced ribosome-associated protein compare
JDDGAC_08695 -1.1 -3.3 DNA-binding protein compare
JDDGAC_02205 uidA -1.1 -2.1 beta-glucuronidase compare
JDDGAC_22880 yggT -1.1 -0.8 osmotic shock tolerance protein YggT compare
JDDGAC_28700 -1.1 -0.9 DUF551 domain-containing protein compare
JDDGAC_01585 ybcI -1.1 -1.3 metal-dependent hydrolase compare
JDDGAC_02115 nth -1.1 -2.6 endonuclease III compare
JDDGAC_01205 dmlR -1.1 -0.7 DNA-binding transcriptional regulator DmlR compare
JDDGAC_05590 gp16 -1.1 -1.7 Bacteriophage Mu, GemA protein compare
JDDGAC_28445 wcaE -1.1 -0.7 colanic acid biosynthesis glycosyltransferase WcaE compare
JDDGAC_27035 glpQ -1.0 -2.1 glycerophosphodiester phosphodiesterase compare
JDDGAC_01780 uhpC -1.0 -1.4 MFS transporter compare
JDDGAC_21780 deaD -1.0 -2.1 ATP-dependent RNA helicase DeaD compare
JDDGAC_08855 ycbZ -1.0 -2.9 Putative Lon protease-like protein compare
JDDGAC_27415 psuG -1.0 -1.1 pseudouridine-5'-phosphate glycosidase compare
JDDGAC_26085 murQ -1.0 -1.7 N-acetylmuramic acid 6-phosphate etherase compare
JDDGAC_07980 -1.0 -2.8 Inovirus Gp2 family protein compare
JDDGAC_01070 cspE -1.0 -1.6 transcription antiterminator/RNA stability regulator CspE compare
JDDGAC_00635 yecJ -1.0 -0.7 Uncharacterized protein YecJ compare
JDDGAC_05850 -1.0 -0.9 hypothetical protein compare
JDDGAC_00800 cmoA -1.0 -2.1 carboxy-S-adenosyl-L-methionine synthase CmoA compare
JDDGAC_09030 cmoM -1.0 -1.3 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
JDDGAC_01170 fadD -1.0 -2.6 long-chain-fatty-acid--CoA ligase FadD compare
JDDGAC_12265 proC -1.0 -1.0 pyrroline-5-carboxylate reductase compare
JDDGAC_23495 ygeK -1.0 -0.9 Uncharacterized response regulatory protein YgeK compare
JDDGAC_04805 mppA -1.0 -1.6 murein tripeptide ABC transporter substrate-binding protein MppA compare
JDDGAC_23645 ygdR -1.0 -1.2 lipoprotein YgdR compare
JDDGAC_03900 espR1 -1.0 -1.0 T3SS effector leucine-rich repeat protein EspR1 compare
JDDGAC_06690 -1.0 -1.5 hypothetical protein compare
JDDGAC_09600 ybjN -1.0 -1.0 Uncharacterized protein YbjN compare
JDDGAC_18005 -1.0 -2.0 Membrane protein compare
JDDGAC_04810 pgrR -1.0 -1.9 DNA-binding transcriptional regulator PgrR compare
JDDGAC_26350 yfdY -1.0 -1.1 Uncharacterized protein YfdY compare


Specific Phenotypes

For 1 genes in this experiment

For phage Phage in Escherichia coli ECRC98

For phage Phage across organisms