Experiment set3S215 for Escherichia coli ECRC98

Compare to:

Bas69

200 most detrimental genes:

  gene name fitness t score description  
JDDGAC_28520 wcaA +8.2 16.2 glycosyl transferase compare
JDDGAC_28510 +8.1 36.9 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
JDDGAC_28525 wzy +7.7 22.4 O157 family O-antigen polymerase compare
JDDGAC_19305 rfaB +7.1 19.0 UDP-glucose--(glucosyl)LPS alpha-1,2-glucosyltransferase compare
JDDGAC_19300 rfaJ +6.8 25.3 glucosyltransferase compare
JDDGAC_28560 wbdQ +6.8 7.5 GDP-mannose mannosyl hydrolase WbdQ/WbhG compare
JDDGAC_05985 galU +6.8 23.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
JDDGAC_18205 wecA +6.6 44.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
JDDGAC_19310 rfaL +6.5 25.3 O-antigen ligase RfaL compare
JDDGAC_19280 rfaG +6.2 21.7 Lipopolysaccharide core biosynthesis protein RfaG compare
JDDGAC_17890 rfaH +5.9 11.1 transcription/translation regulatory transformer protein RfaH compare
JDDGAC_28575 perB +5.6 11.6 GDP-perosamine N-acetyltransferase compare
JDDGAC_19290 waaO +5.6 17.8 lipopolysaccharide 3-alpha-galactosyltransferase compare
JDDGAC_28540 rfbE +5.1 10.5 GDP-perosamine synthase RfbE/PerA compare
JDDGAC_09165 +5.0 14.3 phage tail protein compare
JDDGAC_28515 galF +5.0 8.4 UTP--glucose-1-phosphate uridylyltransferase GalF compare
JDDGAC_19320 rfaF +5.0 8.1 ADP-heptose--LPS heptosyltransferase RfaF compare
JDDGAC_09270 +5.0 10.5 hypothetical protein compare
JDDGAC_06670 +4.8 2.6 hypothetical protein compare
JDDGAC_09320 +4.4 20.0 integrase compare
JDDGAC_19285 rfaP +4.4 6.0 lipopolysaccharide core heptose(I) kinase RfaP compare
JDDGAC_24790 smpB +4.4 8.0 SsrA-binding protein SmpB compare
JDDGAC_09190 +4.3 23.4 Baseplate protein W compare
JDDGAC_09220 lysA +4.2 14.9 Putative antiholin compare
JDDGAC_09255 +4.2 19.3 Capsid assembly scaffolding protein compare
JDDGAC_09215 lysB +4.2 14.2 Rz-like lysis system protein LysB compare
JDDGAC_09125 ogrK +4.2 12.9 prophage transcriptional regulator OgrK compare
JDDGAC_09210 lysC +4.1 8.5 Rz1-like lysis system protein LysC compare
JDDGAC_09140 +4.1 26.6 putative tape measure protein compare
JDDGAC_09815 mntS +4.1 2.2 manganase accumulation protein MntS compare
JDDGAC_09260 +4.0 20.7 oxidoreductase compare
JDDGAC_09150 +4.0 15.3 Tail tube protein compare
JDDGAC_09170 +4.0 5.6 tail fiber assembly protein compare
JDDGAC_09265 +4.0 17.2 phage portal protein compare
JDDGAC_25955 eutS +4.0 1.9 Bacterial microcompartment shell protein EutS compare
JDDGAC_09245 +4.0 15.6 Terminase, endonuclease subunit compare
JDDGAC_09185 +3.9 21.5 Baseplate protein J compare
JDDGAC_09160 spoIVCA +3.8 7.9 DNA-invertase compare
JDDGAC_09130 +3.8 18.8 putative baseplate hub protein compare
JDDGAC_02060 ydhI +3.8 2.5 Uncharacterized protein YdhI compare
JDDGAC_09175 +3.8 22.0 Phage tail collar protein compare
JDDGAC_09135 +3.8 21.5 phage tail protein compare
JDDGAC_09180 +3.8 20.4 phage tail protein I compare
JDDGAC_09195 +3.7 8.0 Spike protein compare
JDDGAC_22885 yggS +3.6 17.1 pyridoxal phosphate homeostasis protein compare
JDDGAC_09155 +3.6 11.9 phage tail protein compare
JDDGAC_11990 clpP +3.5 5.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
JDDGAC_09205 +3.5 9.6 Tail completion protein R compare
JDDGAC_10370 galT +3.4 6.1 galactose-1-phosphate uridylyltransferase compare
JDDGAC_09250 +3.2 12.6 phage major capsid protein, P2 family compare
JDDGAC_11985 clpX +3.2 12.2 ATP-dependent protease ATP-binding subunit ClpX compare
JDDGAC_19275 rfaQ +3.2 5.4 lipopolysaccharide core heptosyltransferase RfaQ compare
JDDGAC_09145 +3.2 10.5 Phage tail assembly chaperone proteins, E, or 41 or 14 compare
JDDGAC_09225 +3.1 9.3 Endolysin compare
JDDGAC_09240 +3.1 13.5 Head completion/stabilization protein compare
JDDGAC_28685 +2.8 3.2 AlpA family transcriptional regulator compare
JDDGAC_25535 +2.7 5.4 hypothetical protein compare
JDDGAC_25495 +2.6 6.8 hypothetical protein compare
JDDGAC_09390 trxB +2.6 4.9 thioredoxin-disulfide reductase compare
JDDGAC_09310 +2.5 5.2 Regulatory phage protein cox compare
JDDGAC_25500 +2.3 5.2 hypothetical protein compare
JDDGAC_25625 +2.2 11.2 hypothetical protein compare
JDDGAC_18215 trxA +2.2 4.3 thioredoxin TrxA compare
JDDGAC_25450 +2.1 5.4 DUF1382 domain-containing protein compare
JDDGAC_25710 +2.1 8.9 DUF2514 domain-containing protein compare
JDDGAC_15395 +2.0 1.8 XRE family transcriptional regulator compare
JDDGAC_06265 ycgN +2.0 3.0 YcgN family cysteine cluster protein compare
JDDGAC_25630 +2.0 15.2 hypothetical protein compare
JDDGAC_25665 +1.9 7.4 BRO family, N-terminal domain-containing protein compare
JDDGAC_25570 +1.9 11.4 Terminase compare
JDDGAC_15905 mutL +1.9 4.9 DNA mismatch repair endonuclease MutL compare
JDDGAC_25705 +1.9 5.6 endolysin compare
JDDGAC_25455 +1.9 6.8 adenine methylase compare
JDDGAC_01920 +1.9 2.3 FAD/NAD(P)-binding protein compare
JDDGAC_25580 Arg_trna +1.9 4.9 tRNA-Arg(tct) compare
JDDGAC_25645 +1.8 14.3 Phage capsid and scaffold compare
JDDGAC_25685 +1.8 11.9 effector protein compare
JDDGAC_18525 +1.7 3.0 hypothetical protein compare
JDDGAC_25700 +1.7 7.2 phage holin family protein compare
JDDGAC_06890 +1.7 1.8 HNH endonuclease compare
JDDGAC_25655 +1.7 12.5 hypothetical protein compare
JDDGAC_25565 +1.7 11.5 terminase small subunit compare
JDDGAC_25660 +1.7 4.9 hypothetical protein compare
JDDGAC_03280 +1.7 2.5 hypothetical protein compare
JDDGAC_15040 yjiS +1.7 4.5 DUF1127 domain-containing protein compare
JDDGAC_25640 +1.7 7.2 Phage protein compare
JDDGAC_25650 +1.7 9.3 hypothetical protein compare
JDDGAC_00945 +1.7 2.5 hypothetical protein compare
JDDGAC_05310 lomR +1.6 2.6 Ail/Lom family protein compare
JDDGAC_25460 +1.6 4.4 transcriptional regulator compare
JDDGAC_02140 rsxB +1.6 2.2 electron transport complex subunit RsxB compare
JDDGAC_00230 dsrB +1.6 1.5 protein DsrB compare
JDDGAC_25600 +1.6 5.8 peptidase compare
JDDGAC_09280 +1.6 2.3 Uncharacterized protein in GpA 5'region compare
JDDGAC_25530 +1.5 7.3 Ead/Ea22-like protein compare
JDDGAC_05525 +1.5 1.2 host nuclease inhibitor protein compare
JDDGAC_05275 +1.5 1.1 Mutator family transposase compare
JDDGAC_25585 +1.5 2.7 hypothetical protein compare
JDDGAC_07340 flgA +1.5 1.8 flagellar basal body P-ring formation protein FlgA compare
JDDGAC_06775 +1.5 2.7 CP4-44 prophage putative disrupted hemin or colicin receptor compare
JDDGAC_19120 tnp-IS3 +1.5 2.2 IS3 family transposase compare
JDDGAC_10590 sdhB +1.5 2.5 succinate dehydrogenase iron-sulfur subunit SdhB compare
JDDGAC_00750 flhe +1.5 1.3 flagellar protein FlhE compare
JDDGAC_25635 +1.5 4.2 Acetyltransferase compare
JDDGAC_06660 +1.4 3.5 head decoration protein compare
JDDGAC_25620 +1.4 4.4 hypothetical protein compare
JDDGAC_25550 +1.4 6.6 DUF551 domain-containing protein compare
JDDGAC_25575 +1.4 5.7 Phage protein (N4 Gp49/phage Sf6 gene 66) family compare
JDDGAC_22825 yggX +1.4 5.4 oxidative damage protection protein compare
JDDGAC_10470 tolR +1.4 1.8 colicin uptake protein TolR compare
JDDGAC_25560 +1.4 8.5 hypothetical protein compare
JDDGAC_25610 +1.4 5.0 hypothetical protein compare
JDDGAC_16385 ytcA +1.4 1.5 Uncharacterized protein YtcA compare
JDDGAC_04595 +1.4 2.3 DUF551 domain-containing protein compare
JDDGAC_00825 nudB +1.4 1.4 dihydroneopterin triphosphate diphosphatase compare
JDDGAC_05620 +1.3 1.3 hypothetical protein compare
JDDGAC_29425 +1.3 0.9 Prophage protein compare
JDDGAC_16980 nfi +1.3 1.7 deoxyribonuclease V compare
JDDGAC_25540 +1.3 7.8 Prophage protein compare
JDDGAC_25695 +1.3 2.0 Putative phage holin compare
JDDGAC_15390 +1.3 5.8 EcoO109IR compare
JDDGAC_05940 oppB +1.3 1.8 oligopeptide ABC transporter permease OppB compare
JDDGAC_11280 hokE +1.3 1.3 type I toxin-antitoxin system toxin HokE compare
JDDGAC_04350 +1.3 2.2 phage tail protein compare
JDDGAC_25475 +1.3 7.3 exodeoxyribonuclease VIII compare
JDDGAC_23655 mutH +1.3 2.7 DNA mismatch repair endonuclease MutH compare
JDDGAC_10485 ybgE +1.3 1.2 cyd operon protein YbgE compare
JDDGAC_10795 +1.3 1.8 Putative outer membrane porin compare
JDDGAC_21625 ibaG +1.3 4.5 BolA family iron metabolism protein IbaG compare
JDDGAC_22955 tkt +1.3 2.9 transketolase compare
JDDGAC_15400 int +1.3 9.7 Integrase compare
JDDGAC_25555 +1.3 6.2 RNA-binding protein compare
JDDGAC_10030 bioF +1.2 1.3 8-amino-7-oxononanoate synthase compare
JDDGAC_02100 gstA +1.2 2.1 glutathione transferase GstA compare
JDDGAC_27870 +1.2 1.6 terminase compare
JDDGAC_03190 +1.2 3.4 DUF977 domain-containing protein compare
JDDGAC_23420 +1.2 1.8 type III secretion protein compare
JDDGAC_18950 cesD +1.2 4.1 SycD/LcrH family type III secretion system chaperone CesD compare
JDDGAC_30040 rsmA +1.2 2.3 SAM-dependent methyltransferase compare
JDDGAC_28895 +1.2 2.4 antiterminator compare
JDDGAC_30200 putA1 +1.2 2.1 CopG family transcriptional regulator compare
JDDGAC_04985 puuD +1.2 2.5 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
JDDGAC_07675 +1.2 1.6 Oligogalacturonate-specific porin protein KdgM compare
JDDGAC_25590 +1.2 7.5 Head to tail connecting protein compare
JDDGAC_05595 mor +1.2 2.0 transcriptional regulator compare
JDDGAC_28605 hisA +1.1 2.6 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
JDDGAC_29495 +1.1 1.3 9-O-acetyl-N-acetylneuraminic acid deacetylase compare
JDDGAC_24455 ygaH +1.1 2.5 L-valine transporter subunit YgaH compare
JDDGAC_21125 yhdN +1.1 2.1 Uncharacterized protein YhdN compare
JDDGAC_25520 +1.1 6.3 Ead/Ea22-like family protein compare
JDDGAC_02005 grxD +1.1 2.9 monothiol glutaredoxin 4 compare
JDDGAC_01055 kdgR +1.1 1.6 DNA-binding transcriptional regulator KdgR compare
JDDGAC_01780 uhpC +1.1 3.8 MFS transporter compare
JDDGAC_10080 +1.1 2.0 phage tail protein compare
JDDGAC_18760 tisB +1.1 1.1 Small toxic protein TisB compare
JDDGAC_30190 tap +1.1 1.7 RepA leader peptide Tap compare
JDDGAC_04000 ansP +1.1 1.7 L-asparagine permease compare
JDDGAC_09275 +1.1 5.5 Replication gene A protein compare
JDDGAC_04745 dgcM +1.1 1.7 diguanylate cyclase DgcM compare
JDDGAC_06080 chaA +1.1 2.7 sodium-potassium/proton antiporter ChaA compare
JDDGAC_19100 +1.1 1.3 Aec79 compare
JDDGAC_05105 lapA +1.1 1.5 lipopolysaccharide assembly protein LapA compare
JDDGAC_27515 yeiS +1.1 1.6 Uncharacterized protein YeiS compare
JDDGAC_01815 ydiH +1.1 1.4 Uncharacterized protein YdiH compare
JDDGAC_00325 yedK +1.1 3.8 Abasic site processing protein YedK compare
JDDGAC_30115 insE +1.1 3.0 Transposase InsE and inactivated derivatives compare
JDDGAC_06430 +1.1 0.9 phage tail protein compare
JDDGAC_06460 +1.1 2.7 Tail completion protein Z compare
JDDGAC_24190 mutS +1.1 5.2 DNA mismatch repair protein MutS compare
JDDGAC_25595 +1.0 2.3 Phage protein compare
JDDGAC_02485 +1.0 1.6 DUF977 domain-containing protein compare
JDDGAC_29305 ycdB +1.0 1.9 putative transcriptional regulatory protein YcdB compare
JDDGAC_07800 tnpB +1.0 1.8 IS66 family insertion sequence element accessory protein TnpB compare
JDDGAC_07000 +1.0 0.9 DUF551 domain-containing protein compare
JDDGAC_06275 ycgL +1.0 1.0 Protein YcgL compare
JDDGAC_29175 yeeT +1.0 1.1 Uncharacterized protein YeeT compare
JDDGAC_21945 agaF +1.0 1.1 PTS galactosamine/N-acetylgalactosamine transporter subunit IIA compare
JDDGAC_06145 prs +1.0 1.7 ribose-phosphate diphosphokinase compare
JDDGAC_25465 +1.0 5.3 transcriptional regulator compare
JDDGAC_30100 +1.0 4.2 Transposase compare
JDDGAC_07630 +1.0 2.2 putative transposase of insertion sequence IS682 compare
JDDGAC_19670 tag +1.0 1.3 DNA-3-methyladenine glycosylase I compare
JDDGAC_25545 +1.0 4.8 hypothetical protein compare
JDDGAC_04630 ydaU +1.0 1.5 Uncharacterized protein YdaU compare
JDDGAC_00950 yebE +1.0 1.5 Inner membrane protein YebE compare
JDDGAC_03230 +1.0 1.7 Ead/Ea22-like protein compare
JDDGAC_28590 wzzB +1.0 6.1 LPS O-antigen chain length determinant protein WzzB compare
JDDGAC_13030 araC +1.0 3.9 AraC family transcriptional regulator compare
JDDGAC_00675 flhD +1.0 1.4 flagellar transcriptional regulator FlhD compare
JDDGAC_28700 +1.0 1.4 DUF551 domain-containing protein compare
JDDGAC_11305 ybdJ +1.0 1.5 Uncharacterized protein YbdJ compare
JDDGAC_01755 ydiP +1.0 1.1 Uncharacterized HTH-type transcriptional regulator YdiP compare
JDDGAC_05850 +1.0 1.4 hypothetical protein compare
JDDGAC_27785 rusA +1.0 0.8 crossover junction endodeoxyribonuclease RusA compare
JDDGAC_07260 yceD +0.9 1.3 23S rRNA accumulation protein YceD compare
JDDGAC_08005 ycdU +0.9 2.2 Uncharacterized protein YcdU compare
JDDGAC_29170 cbtA +0.9 1.4 type IV toxin-antitoxin system toxin CbtA compare
JDDGAC_04875 ycjV +0.9 1.9 Uncharacterized ABC transporter ATP-binding protein YcjV compare
JDDGAC_01870 fumD +0.9 1.3 fumarate hydratase FumD compare
JDDGAC_25445 +0.9 5.0 integrase compare


Specific Phenotypes

For 2 genes in this experiment

For phage Phage in Escherichia coli ECRC98

For phage Phage across organisms