Experiment set3S210 for Rhodanobacter sp000427505 FW510-R12

Compare to:

R2A_PIPES with Nickel (II) chloride hexahydrate 848 uM

200 most important genes:

  gene name fitness t score description  
LRK53_RS06850 -3.4 -1.8 protein translocase subunit SecD compare
LRK53_RS19155 -2.4 -2.7 hypothetical protein compare
LRK53_RS13020 -2.1 -2.0 sulfur transferase domain-containing protein compare
LRK53_RS03715 -2.0 -1.3 cell division ATP-binding protein FtsE compare
LRK53_RS12880 -1.9 -1.3 hypothetical protein compare
LRK53_RS10680 -1.8 -2.6 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS00690 -1.7 -1.7 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS02285 -1.7 -1.2 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS10035 -1.6 -1.5 hypothetical protein compare
LRK53_RS16345 -1.6 -1.5 hypothetical protein compare
LRK53_RS12970 -1.4 -2.3 RNA 2',3'-cyclic phosphodiesterase compare
LRK53_RS18830 -1.4 -1.9 TraV family lipoprotein compare
LRK53_RS11790 -1.4 -1.6 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS05465 -1.4 -2.2 hemin uptake protein HemP compare
LRK53_RS00915 -1.4 -1.3 Na+/H+ antiporter subunit C compare
LRK53_RS05865 -1.4 -3.5 response regulator transcription factor compare
LRK53_RS05265 -1.3 -1.5 hypothetical protein compare
LRK53_RS00760 -1.3 -0.8 DUF302 domain-containing protein compare
LRK53_RS11330 -1.2 -1.2 (d)CMP kinase compare
LRK53_RS13100 -1.2 -1.3 AzlC family ABC transporter permease compare
LRK53_RS07200 -1.2 -2.2 hypothetical protein compare
LRK53_RS00565 -1.1 -1.5 ATP-binding protein compare
LRK53_RS16290 -1.1 -2.0 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS06515 -1.1 -1.6 amidase family protein compare
LRK53_RS08225 -1.1 -2.6 DeoR/GlpR family DNA-binding transcription regulator compare
LRK53_RS16520 -1.1 -2.6 HAMP domain-containing histidine kinase compare
LRK53_RS08820 -1.1 -1.7 YbaB/EbfC family nucleoid-associated protein compare
LRK53_RS01505 -1.1 -1.7 hotdog fold thioesterase compare
LRK53_RS08910 -1.1 -2.1 endolytic transglycosylase MltG compare
LRK53_RS02380 -1.1 -1.7 hypothetical protein compare
LRK53_RS14290 -1.1 -1.8 penicillin acylase family protein compare
LRK53_RS11805 -1.1 -0.7 heavy metal translocating P-type ATPase compare
LRK53_RS09170 -1.1 -1.2 cupin domain-containing protein compare
LRK53_RS02950 -1.1 -10.2 YbaY family lipoprotein compare
LRK53_RS01585 -1.0 -1.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS09830 -1.0 -1.5 phosphoglycerate mutase compare
LRK53_RS05555 -1.0 -1.1 NfeD family protein compare
LRK53_RS08350 -1.0 -1.5 tryptophan synthase subunit beta compare
LRK53_RS10260 -1.0 -2.0 heme-binding protein compare
LRK53_RS00925 -1.0 -2.7 Na+/H+ antiporter subunit E compare
LRK53_RS14110 -1.0 -1.1 GNAT family N-acetyltransferase compare
LRK53_RS17200 -1.0 -6.9 oxygen-independent coproporphyrinogen III oxidase compare
LRK53_RS00985 -1.0 -3.4 hypothetical protein compare
LRK53_RS03630 -1.0 -5.8 fatty acid desaturase compare
LRK53_RS10480 -1.0 -2.1 universal stress protein compare
LRK53_RS13895 -1.0 -0.9 histone H1-like repetitive region-containing protein compare
LRK53_RS01745 -0.9 -4.5 TetR/AcrR family transcriptional regulator compare
LRK53_RS08430 -0.9 -0.8 30S ribosomal protein THX compare
LRK53_RS04155 -0.9 -1.4 DUF2383 domain-containing protein compare
LRK53_RS11280 -0.9 -2.3 MBL fold metallo-hydrolase compare
LRK53_RS13625 -0.9 -0.8 carbon storage regulator CsrA compare
LRK53_RS10985 -0.9 -2.2 phosphatase PAP2 family protein compare
LRK53_RS06925 -0.9 -1.0 MtnX-like HAD-IB family phosphatase compare
LRK53_RS03745 -0.9 -5.3 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS07600 -0.9 -0.8 ABC transporter ATP-binding protein compare
LRK53_RS08100 -0.9 -1.2 MBL fold metallo-hydrolase compare
LRK53_RS06035 -0.9 -0.9 helix-turn-helix domain-containing protein compare
LRK53_RS04950 -0.9 -1.3 carbohydrate kinase compare
LRK53_RS12980 -0.8 -1.1 hypothetical protein compare
LRK53_RS09340 -0.8 -2.2 hypothetical protein compare
LRK53_RS05395 -0.8 -2.3 transcriptional regulator NrdR compare
LRK53_RS05505 -0.8 -2.1 ABC transporter ATP-binding protein compare
LRK53_RS15730 -0.8 -1.3 HPr family phosphocarrier protein compare
LRK53_RS06820 -0.8 -2.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS10280 -0.8 -0.9 2-oxo-3-hexenedioate decarboxylase compare
LRK53_RS09265 -0.8 -0.9 GntR family transcriptional regulator compare
LRK53_RS08475 -0.8 -3.1 imidazole glycerol phosphate synthase subunit HisH compare
LRK53_RS03065 -0.8 -0.7 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS09730 -0.8 -1.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS08665 -0.8 -1.5 hypothetical protein compare
LRK53_RS13190 -0.8 -3.5 SAM-dependent methyltransferase compare
LRK53_RS07310 -0.8 -1.4 DEAD/DEAH box helicase compare
LRK53_RS14405 -0.8 -1.9 hypothetical protein compare
LRK53_RS11620 -0.8 -1.5 hypothetical protein compare
LRK53_RS17785 -0.8 -1.7 septal ring lytic transglycosylase RlpA family protein compare
LRK53_RS04200 -0.8 -1.0 hypothetical protein compare
LRK53_RS04640 -0.8 -1.0 helix-turn-helix domain-containing protein compare
LRK53_RS05635 -0.8 -1.7 YbjQ family protein compare
LRK53_RS16165 -0.7 -1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS11155 -0.7 -3.1 glutamine-hydrolyzing GMP synthase compare
LRK53_RS07420 -0.7 -1.4 DNA repair protein RadA compare
LRK53_RS11230 -0.7 -2.9 hypothetical protein compare
LRK53_RS09660 -0.7 -0.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK53_RS17510 -0.7 -2.5 hypothetical protein compare
LRK53_RS11075 -0.7 -2.1 thymidine phosphorylase family protein compare
LRK53_RS09085 -0.7 -0.5 30S ribosomal protein S15 compare
LRK53_RS14790 -0.7 -1.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS12280 -0.7 -1.6 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS03050 -0.7 -1.2 ComF family protein compare
LRK53_RS01830 -0.7 -0.8 hypothetical protein compare
LRK53_RS13205 -0.7 -2.4 hypothetical protein compare
LRK53_RS02580 -0.7 -2.8 c-type cytochrome compare
LRK53_RS04185 -0.7 -2.3 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS15705 -0.7 -3.6 RNA polymerase factor sigma-54 compare
LRK53_RS12250 -0.7 -3.8 Mth938-like domain-containing protein compare
LRK53_RS03545 -0.7 -1.1 DUF2249 domain-containing protein compare
LRK53_RS15240 -0.7 -2.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
LRK53_RS16335 -0.7 -2.1 PepSY domain-containing protein compare
LRK53_RS02465 -0.7 -3.2 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
LRK53_RS05645 -0.7 -2.0 kinase compare
LRK53_RS05110 -0.7 -1.9 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK53_RS04310 -0.7 -0.9 YdcH family protein compare
LRK53_RS13415 -0.7 -0.9 DUF2059 domain-containing protein compare
LRK53_RS04390 -0.7 -1.2 glycosyltransferase family 2 protein compare
LRK53_RS08530 -0.7 -1.8 NUDIX hydrolase compare
LRK53_RS17865 -0.7 -0.7 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS13925 -0.7 -2.9 NrsF family protein compare
LRK53_RS17130 -0.6 -6.1 energy transducer TonB compare
LRK53_RS12000 -0.6 -1.9 sigma-E factor negative regulatory protein compare
LRK53_RS03770 -0.6 -2.2 hypothetical protein compare
LRK53_RS03720 -0.6 -1.9 permease-like cell division protein FtsX compare
LRK53_RS05015 -0.6 -1.9 LacI family DNA-binding transcriptional regulator compare
LRK53_RS02625 -0.6 -1.2 plasmid stabilization protein compare
LRK53_RS09475 -0.6 -4.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS05165 -0.6 -3.0 tol-pal system protein YbgF compare
LRK53_RS00015 -0.6 -3.2 DNA replication/repair protein RecF compare
LRK53_RS06110 -0.6 -1.0 NAD(P) transhydrogenase subunit alpha compare
LRK53_RS01440 -0.6 -1.9 ATP-binding cassette domain-containing protein compare
LRK53_RS13565 -0.6 -0.9 isocitrate dehydrogenase compare
LRK53_RS01495 -0.6 -3.1 DUF1190 domain-containing protein compare
LRK53_RS13540 -0.6 -1.9 glycine cleavage system protein R compare
LRK53_RS09620 -0.6 -2.1 hypothetical protein compare
LRK53_RS00475 -0.6 -2.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
LRK53_RS15630 -0.6 -2.0 RNA methyltransferase compare
LRK53_RS09230 -0.6 -1.3 class II fumarate hydratase compare
LRK53_RS14010 -0.6 -1.2 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS05760 -0.6 -0.5 chemotaxis protein CheW compare
LRK53_RS14470 -0.6 -1.9 PepSY domain-containing protein compare
LRK53_RS06235 -0.6 -1.4 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase compare
LRK53_RS05810 -0.6 -1.3 DUF4097 family beta strand repeat-containing protein compare
LRK53_RS07550 -0.6 -1.5 acetylornithine deacetylase compare
LRK53_RS11400 -0.6 -1.6 DNA repair protein RecN compare
LRK53_RS13960 -0.6 -1.6 LysE family transporter compare
LRK53_RS06040 -0.6 -2.8 HigA family addiction module antitoxin compare
LRK53_RS04300 -0.6 -1.7 DUF4398 domain-containing protein compare
LRK53_RS07150 -0.6 -2.3 paraquat-inducible protein A compare
LRK53_RS08775 -0.6 -3.5 aromatic amino acid ammonia-lyase compare
LRK53_RS02135 -0.6 -1.2 hypothetical protein compare
LRK53_RS12825 -0.6 -2.1 DUF1415 domain-containing protein compare
LRK53_RS10160 -0.6 -1.2 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS11490 -0.6 -1.5 preprotein translocase subunit SecG compare
LRK53_RS14055 -0.6 -1.5 hypothetical protein compare
LRK53_RS07300 -0.6 -1.3 DEAD/DEAH box helicase compare
LRK53_RS01215 -0.6 -2.6 hypothetical protein compare
LRK53_RS08125 -0.6 -5.3 TonB-dependent receptor compare
LRK53_RS15100 -0.6 -1.6 flagellar protein FliT compare
LRK53_RS06865 -0.6 -2.6 phosphotransferase compare
LRK53_RS07670 -0.6 -2.5 NUDIX domain-containing protein compare
LRK53_RS06795 -0.6 -1.2 phosphoglycerate dehydrogenase compare
LRK53_RS16650 -0.6 -1.2 O-acetyl-ADP-ribose deacetylase compare
LRK53_RS05560 -0.6 -1.5 threonine/serine exporter family protein compare
LRK53_RS18445 -0.6 -0.8 hypothetical protein compare
LRK53_RS12670 -0.6 -2.0 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS12405 -0.6 -2.3 VOC family protein compare
LRK53_RS18045 -0.6 -1.1 DUF6429 family protein compare
LRK53_RS07945 -0.6 -4.2 NAD-glutamate dehydrogenase compare
LRK53_RS14365 -0.5 -0.6 hypothetical protein compare
LRK53_RS12800 -0.5 -0.9 DUF4190 domain-containing protein compare
LRK53_RS01620 -0.5 -1.6 type II 3-dehydroquinate dehydratase compare
LRK53_RS00215 -0.5 -1.7 TetR/AcrR family transcriptional regulator compare
LRK53_RS18720 -0.5 -2.6 RES domain-containing protein compare
LRK53_RS13965 -0.5 -0.9 NAD(P)H-dependent oxidoreductase compare
LRK53_RS14715 -0.5 -1.7 zinc-binding protein compare
LRK53_RS00430 -0.5 -1.2 conjugal transfer protein TraR compare
LRK53_RS11335 -0.5 -1.5 acyl-CoA-binding protein compare
LRK53_RS10290 -0.5 -2.1 4-hydroxy-2-oxovalerate aldolase compare
LRK53_RS08825 -0.5 -1.1 recombination mediator RecR compare
LRK53_RS08175 -0.5 -1.6 methyl-accepting chemotaxis protein compare
LRK53_RS02615 -0.5 -2.5 type I-F CRISPR-associated protein Csy2 compare
LRK53_RS13070 -0.5 -1.3 OsmC family protein compare
LRK53_RS15050 -0.5 -1.9 flagellar basal body-associated FliL family protein compare
LRK53_RS00395 -0.5 -1.0 SDR family oxidoreductase compare
LRK53_RS15045 -0.5 -2.4 flagellar motor switch protein FliM compare
LRK53_RS05170 -0.5 -0.7 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS16850 -0.5 -2.5 cytochrome ubiquinol oxidase subunit I compare
LRK53_RS08160 -0.5 -1.8 DMT family transporter compare
LRK53_RS11780 -0.5 -0.7 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS17090 -0.5 -2.7 ATP-binding protein compare
LRK53_RS01755 -0.5 -3.0 zinc-binding alcohol dehydrogenase family protein compare
LRK53_RS00370 -0.5 -1.9 DNA starvation/stationary phase protection protein compare
LRK53_RS08135 -0.5 -3.6 PepSY domain-containing protein compare
LRK53_RS02815 -0.5 -1.1 DmsE family decaheme c-type cytochrome compare
LRK53_RS03970 -0.5 -1.2 hypothetical protein compare
LRK53_RS07695 -0.5 -1.3 enoyl-CoA hydratase-related protein compare
LRK53_RS12890 -0.5 -1.8 hypothetical protein compare
LRK53_RS00415 -0.5 -2.0 DsbA family protein compare
LRK53_RS01435 -0.5 -1.6 alpha/beta hydrolase compare
LRK53_RS14460 -0.5 -1.8 response regulator transcription factor compare
LRK53_RS06800 -0.5 -2.4 FAD-binding oxidoreductase compare
LRK53_RS00295 -0.5 -1.1 hypothetical protein compare
LRK53_RS06045 -0.5 -1.4 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK53_RS19135 -0.5 -1.2 hypothetical protein compare
LRK53_RS13510 -0.5 -2.9 polynucleotide adenylyltransferase PcnB compare
LRK53_RS14720 -0.5 -1.6 hypothetical protein compare
LRK53_RS02270 -0.5 -1.6 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS03145 -0.5 -1.5 IS1595 family transposase compare
LRK53_RS09460 -0.5 -1.2 methylisocitrate lyase compare
LRK53_RS04050 -0.5 -2.2 SGNH/GDSL hydrolase family protein compare
LRK53_RS13245 -0.5 -2.5 SGNH/GDSL hydrolase family protein compare
LRK53_RS14875 -0.5 -2.9 magnesium and cobalt transport protein CorA compare


Specific Phenotypes

For 2 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Rhodanobacter sp000427505 FW510-R12

For stress Nickel (II) chloride hexahydrate across organisms