Experiment set3S207 for Fusobacterium nucleatum SB010

G2M5_D4

Group: mouse
Media:
Culturing: Fusobacterium_SB010_ML1
By: Anthony on 1/21/25

Specific Phenotypes

For 4 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Methionine Degradation	2
Fermentations: Mixed acid	1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria	1
Methionine Biosynthesis	1
Propanediol utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycine, serine and threonine metabolism
• Retinol metabolism
• Glycolysis / Gluconeogenesis
• Fructose and mannose metabolism
• Ascorbate and aldarate metabolism
• Fatty acid metabolism
• C21-Steroid hormone metabolism
• Methionine metabolism
• Tyrosine metabolism
• Bisphenol A degradation
• Selenoamino acid metabolism
• Nucleotide sugars metabolism
• Polyketide sugar unit biosynthesis
• Aminosugars metabolism
• Glycerolipid metabolism
• Linoleic acid metabolism
• 1- and 2-Methylnaphthalene degradation
• Tetrachloroethene degradation
• Benzoate degradation via CoA ligation
• 3-Chloroacrylic acid degradation
• Butanoate metabolism
• Alkaloid biosynthesis I
• Metabolism of xenobiotics by cytochrome P450
• Insect hormone biosynthesis
• Drug metabolism - cytochrome P450
• Biosynthesis of unsaturated fatty acids
• Biosynthesis of type II polyketide products
• Biosynthesis of alkaloids derived from shikimate pathway

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-methionine degradation II	3	3	3
acetaldehyde biosynthesis I	1	1	1
ethanol degradation I	2	2	1
seleno-amino acid detoxification and volatilization I	2	1	1
dimethyl sulfide biosynthesis from methionine	2	1	1
pyruvate fermentation to ethanol II	2	1	1
glycerol degradation III	2	1	1
(S)-propane-1,2-diol degradation	5	4	2
L-threonine degradation I	6	6	2
pyruvate fermentation to ethanol I	3	3	1
pyruvate fermentation to ethanol III	3	3	1
seleno-amino acid detoxification and volatilization III	3	2	1
L-valine degradation II	3	1	1
L-methionine degradation III	3	1	1
L-isoleucine degradation II	3	1	1
ethanol degradation II	3	1	1
L-leucine degradation III	3	1	1
L-isoleucine biosynthesis I (from threonine)	7	3	2
L-tyrosine degradation III	4	2	1
cytidine-5'-diphosphate-glycerol biosynthesis	4	2	1
phytol degradation	4	2	1
L-phenylalanine degradation III	4	2	1
superpathway of glycerol degradation to 1,3-propanediol	4	1	1
salidroside biosynthesis	4	1	1
ethanolamine utilization	5	5	1
acetylene degradation (anaerobic)	5	4	1
pyruvate fermentation to isobutanol (engineered)	5	1	1
phenylethanol biosynthesis	5	1	1
superpathway of L-isoleucine biosynthesis I	13	6	2
noradrenaline and adrenaline degradation	13	2	2
3-methylbutanol biosynthesis (engineered)	7	2	1
serotonin degradation	7	2	1
hypoglycin biosynthesis	14	3	2
butanol and isobutanol biosynthesis (engineered)	8	1	1
superpathway of branched chain amino acid biosynthesis	17	4	2
superpathway of fermentation (Chlamydomonas reinhardtii)	9	7	1
1,3-propanediol biosynthesis (engineered)	9	6	1
superpathway of L-threonine metabolism	18	10	2
superpathway of seleno-compound metabolism	19	5	2
superpathway of Clostridium acetobutylicum solventogenic fermentation	13	9	1
L-tryptophan degradation V (side chain pathway)	13	1	1
mixed acid fermentation	16	8	1
superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation	17	11	1
heterolactic fermentation	18	13	1
hexitol fermentation to lactate, formate, ethanol and acetate	19	17	1
superpathway of anaerobic sucrose degradation	19	15	1
superpathway of N-acetylneuraminate degradation	22	17	1