Experiment set3S206 for Rhodanobacter sp000427505 FW510-R12

Compare to:

R2A_PIPES with Manganese (II) chloride tetrahydrate 2 mM

200 most important genes:

  gene name fitness t score description  
LRK53_RS04655 -3.9 -3.8 manganese efflux pump MntP family protein compare
LRK53_RS00915 -2.9 -1.9 Na+/H+ antiporter subunit C compare
LRK53_RS06820 -2.9 -2.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS14790 -2.8 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS16335 -2.7 -4.5 PepSY domain-containing protein compare
LRK53_RS05125 -2.4 -14.3 potassium transporter Kup compare
LRK53_RS12370 -2.1 -2.0 VOC family protein compare
LRK53_RS03715 -2.1 -1.4 cell division ATP-binding protein FtsE compare
LRK53_RS16330 -1.9 -7.3 TonB-dependent receptor plug domain-containing protein compare
LRK53_RS19015 -1.8 -3.2 hypothetical protein compare
LRK53_RS03065 -1.8 -1.4 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS13180 -1.6 -1.9 hypothetical protein compare
LRK53_RS04190 -1.6 -4.0 dihydrolipoyl dehydrogenase compare
LRK53_RS11155 -1.6 -4.9 glutamine-hydrolyzing GMP synthase compare
LRK53_RS14770 -1.6 -2.1 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS02850 -1.6 -1.0 response regulator compare
LRK53_RS04505 -1.5 -2.2 met regulon transcriptional regulator MetJ compare
LRK53_RS03745 -1.4 -7.8 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS09520 -1.4 -1.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS01660 -1.4 -2.2 hypothetical protein compare
LRK53_RS04075 -1.4 -10.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS18770 -1.4 -2.0 hypothetical protein compare
LRK53_RS04200 -1.3 -1.7 hypothetical protein compare
LRK53_RS12980 -1.3 -1.7 hypothetical protein compare
LRK53_RS03695 -1.3 -8.1 glutamate--cysteine ligase compare
LRK53_RS02405 -1.3 -2.1 YecA family protein compare
LRK53_RS14735 -1.3 -1.9 copper-containing nitrite reductase compare
LRK53_RS15705 -1.3 -6.4 RNA polymerase factor sigma-54 compare
LRK53_RS16300 -1.3 -2.2 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS03165 -1.3 -2.3 homoserine dehydrogenase compare
LRK53_RS13625 -1.2 -0.8 carbon storage regulator CsrA compare
LRK53_RS09265 -1.2 -1.1 GntR family transcriptional regulator compare
LRK53_RS14810 -1.2 -1.6 DUF3301 domain-containing protein compare
LRK53_RS11790 -1.2 -1.4 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS02285 -1.2 -1.4 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS13895 -1.2 -1.1 histone H1-like repetitive region-containing protein compare
LRK53_RS18025 -1.2 -1.5 hypothetical protein compare
LRK53_RS05865 -1.2 -3.6 response regulator transcription factor compare
LRK53_RS07695 -1.2 -2.5 enoyl-CoA hydratase-related protein compare
LRK53_RS09830 -1.2 -1.6 phosphoglycerate mutase compare
LRK53_RS03720 -1.2 -2.5 permease-like cell division protein FtsX compare
LRK53_RS10035 -1.2 -1.2 hypothetical protein compare
LRK53_RS04185 -1.2 -3.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS11455 -1.2 -2.7 NfuA family Fe-S biogenesis protein compare
LRK53_RS04390 -1.2 -1.7 glycosyltransferase family 2 protein compare
LRK53_RS12250 -1.2 -5.7 Mth938-like domain-containing protein compare
LRK53_RS17570 -1.1 -1.6 alpha/beta hydrolase compare
LRK53_RS09905 -1.1 -1.5 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS07420 -1.1 -1.9 DNA repair protein RadA compare
LRK53_RS13525 -1.1 -3.3 ferredoxin family protein compare
LRK53_RS09475 -1.1 -6.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS16495 -1.1 -1.1 adenosylhomocysteinase compare
LRK53_RS05725 -1.1 -6.6 glutathione synthase compare
LRK53_RS11330 -1.1 -1.2 (d)CMP kinase compare
LRK53_RS04370 -1.1 -5.2 cystathionine gamma-synthase compare
LRK53_RS17410 -1.1 -1.6 DUF456 domain-containing protein compare
LRK53_RS08100 -1.0 -1.5 MBL fold metallo-hydrolase compare
LRK53_RS07020 -1.0 -1.8 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS16900 -1.0 -2.7 ribose-5-phosphate isomerase RpiA compare
LRK53_RS17005 -1.0 -1.8 hypothetical protein compare
LRK53_RS15805 -1.0 -2.4 NAD(P)-binding domain-containing protein compare
LRK53_RS12580 -1.0 -1.9 biopolymer transporter ExbD compare
LRK53_RS12585 -1.0 -2.7 MotA/TolQ/ExbB proton channel family protein compare
LRK53_RS04795 -1.0 -2.3 IS5 family transposase compare
LRK53_RS12025 -1.0 -1.5 DUF2058 family protein compare
LRK53_RS06945 -1.0 -2.7 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS05680 -0.9 -1.8 pyrroline-5-carboxylate reductase compare
LRK53_RS09460 -0.9 -2.1 methylisocitrate lyase compare
LRK53_RS16550 -0.9 -2.3 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
LRK53_RS17185 -0.9 -1.6 copper-containing nitrite reductase compare
LRK53_RS17220 -0.9 -1.7 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS17900 -0.9 -1.5 dUTP diphosphatase compare
LRK53_RS11805 -0.9 -0.8 heavy metal translocating P-type ATPase compare
LRK53_RS03050 -0.9 -2.0 ComF family protein compare
LRK53_RS09085 -0.9 -1.3 30S ribosomal protein S15 compare
LRK53_RS00945 -0.9 -1.6 helix-turn-helix domain-containing protein compare
LRK53_RS04100 -0.9 -1.4 DUF3247 family protein compare
LRK53_RS16650 -0.9 -1.3 O-acetyl-ADP-ribose deacetylase compare
LRK53_RS08125 -0.9 -8.2 TonB-dependent receptor compare
LRK53_RS18155 -0.9 -1.2 hypothetical protein compare
LRK53_RS11370 -0.9 -2.5 2OG-Fe(II) oxygenase compare
LRK53_RS17865 -0.8 -0.9 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS08350 -0.8 -1.4 tryptophan synthase subunit beta compare
LRK53_RS13510 -0.8 -4.6 polynucleotide adenylyltransferase PcnB compare
LRK53_RS12275 -0.8 -1.6 Smr/MutS family protein compare
LRK53_RS13380 -0.8 -1.3 hypothetical protein compare
LRK53_RS09655 -0.8 -4.4 ribonuclease R compare
LRK53_RS15865 -0.8 -2.0 hypothetical protein compare
LRK53_RS00395 -0.8 -1.8 SDR family oxidoreductase compare
LRK53_RS05110 -0.8 -2.5 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK53_RS02270 -0.8 -2.6 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS03330 -0.8 -0.9 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS12405 -0.8 -3.1 VOC family protein compare
LRK53_RS15715 -0.8 -6.8 HPr(Ser) kinase/phosphatase compare
LRK53_RS08910 -0.8 -1.7 endolytic transglycosylase MltG compare
LRK53_RS04275 -0.8 -2.1 co-chaperone DjlA compare
LRK53_RS07490 -0.8 -2.3 phytoene synthase compare
LRK53_RS18080 -0.8 -2.6 glucose-6-phosphate isomerase compare
LRK53_RS03630 -0.7 -5.0 fatty acid desaturase compare
LRK53_RS05070 -0.7 -1.9 helix-turn-helix transcriptional regulator compare
LRK53_RS06545 -0.7 -1.2 TIGR02099 family protein compare
LRK53_RS05015 -0.7 -2.2 LacI family DNA-binding transcriptional regulator compare
LRK53_RS02340 -0.7 -1.8 isopentenyl-diphosphate Delta-isomerase compare
LRK53_RS05200 -0.7 -1.5 type IV pilus modification protein PilV compare
LRK53_RS14355 -0.7 -2.5 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
LRK53_RS05355 -0.7 -2.0 hypothetical protein compare
LRK53_RS11075 -0.7 -2.1 thymidine phosphorylase family protein compare
LRK53_RS13035 -0.7 -1.5 hypothetical protein compare
LRK53_RS09090 -0.7 -4.0 polyribonucleotide nucleotidyltransferase compare
LRK53_RS04500 -0.7 -3.0 glycine cleavage system protein GcvH compare
LRK53_RS16195 -0.7 -2.3 Co2+/Mg2+ efflux protein ApaG compare
LRK53_RS07395 -0.7 -1.5 iron-sulfur cluster assembly accessory protein compare
LRK53_RS17205 -0.7 -2.7 fumarylacetoacetate hydrolase family protein compare
LRK53_RS15250 -0.7 -3.5 membrane assembly protein AsmA compare
LRK53_RS00405 -0.7 -1.2 trimeric intracellular cation channel family protein compare
LRK53_RS02580 -0.7 -2.9 c-type cytochrome compare
LRK53_RS02135 -0.7 -1.5 hypothetical protein compare
LRK53_RS14965 -0.7 -1.8 chemotaxis protein CheW compare
LRK53_RS07980 -0.7 -1.0 GNAT family N-acetyltransferase compare
LRK53_RS14375 -0.6 -4.0 excinuclease ABC subunit UvrB compare
LRK53_RS08225 -0.6 -1.7 DeoR/GlpR family DNA-binding transcription regulator compare
LRK53_RS04475 -0.6 -3.3 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS06175 -0.6 -1.1 acylphosphatase compare
LRK53_RS04890 -0.6 -1.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
LRK53_RS01585 -0.6 -1.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS04315 -0.6 -4.7 pyridoxal-phosphate dependent enzyme compare
LRK53_RS02465 -0.6 -3.3 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
LRK53_RS14110 -0.6 -0.9 GNAT family N-acetyltransferase compare
LRK53_RS07945 -0.6 -4.8 NAD-glutamate dehydrogenase compare
LRK53_RS16290 -0.6 -1.4 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS14100 -0.6 -1.4 response regulator transcription factor compare
LRK53_RS11425 -0.6 -1.3 RnfH family protein compare
LRK53_RS09710 -0.6 -1.8 high frequency lysogenization protein HflD compare
LRK53_RS16035 -0.6 -1.1 hypothetical protein compare
LRK53_RS08775 -0.6 -3.8 aromatic amino acid ammonia-lyase compare
LRK53_RS00215 -0.6 -1.9 TetR/AcrR family transcriptional regulator compare
LRK53_RS05060 -0.6 -1.0 hypothetical protein compare
LRK53_RS07450 -0.6 -0.7 50S ribosomal protein L19 compare
LRK53_RS18170 -0.6 -2.0 HAMP domain-containing histidine kinase compare
LRK53_RS16790 -0.6 -1.3 YicC family protein compare
LRK53_RS16160 -0.6 -1.4 hypothetical protein compare
LRK53_RS01745 -0.6 -3.2 TetR/AcrR family transcriptional regulator compare
LRK53_RS00295 -0.6 -1.5 hypothetical protein compare
LRK53_RS18460 -0.6 -1.5 hypothetical protein compare
LRK53_RS03770 -0.6 -2.2 hypothetical protein compare
LRK53_RS08140 -0.6 -1.7 hypothetical protein compare
LRK53_RS16520 -0.6 -1.9 HAMP domain-containing histidine kinase compare
LRK53_RS09525 -0.6 -1.7 RNA chaperone Hfq compare
LRK53_RS13780 -0.6 -1.1 acetoacetyl-CoA reductase compare
LRK53_RS14190 -0.6 -1.0 MAPEG family protein compare
LRK53_RS11780 -0.6 -0.4 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS00740 -0.6 -1.3 MarR family transcriptional regulator compare
LRK53_RS05580 -0.6 -2.0 phosphatidylcholine/phosphatidylserine synthase compare
LRK53_RS11280 -0.6 -1.3 MBL fold metallo-hydrolase compare
LRK53_RS16720 -0.6 -5.0 citrate synthase compare
LRK53_RS08310 -0.6 -4.7 chorismate synthase compare
LRK53_RS08420 -0.6 -1.8 MerC domain-containing protein compare
LRK53_RS11025 -0.6 -1.2 hypothetical protein compare
LRK53_RS00645 -0.5 -1.1 GTP cyclohydrolase I FolE compare
LRK53_RS06570 -0.5 -0.7 DUF615 domain-containing protein compare
LRK53_RS00975 -0.5 -1.5 hypothetical protein compare
LRK53_RS10175 -0.5 -2.2 DUF3606 domain-containing protein compare
LRK53_RS14975 -0.5 -2.8 flagellar motor protein compare
LRK53_RS09865 -0.5 -1.4 thioesterase compare
LRK53_RS07470 -0.5 -2.8 TRZ/ATZ family hydrolase compare
LRK53_RS13955 -0.5 -2.6 LysR substrate-binding domain-containing protein compare
LRK53_RS07600 -0.5 -0.6 ABC transporter ATP-binding protein compare
LRK53_RS04950 -0.5 -0.8 carbohydrate kinase compare
LRK53_RS17345 -0.5 -2.5 hypothetical protein compare
LRK53_RS11180 -0.5 -2.2 tetratricopeptide repeat protein compare
LRK53_RS07510 -0.5 -3.3 TonB-dependent siderophore receptor compare
LRK53_RS09200 -0.5 -2.4 siroheme synthase CysG compare
LRK53_RS02140 -0.5 -2.1 hypothetical protein compare
LRK53_RS05870 -0.5 -3.8 ATP-binding protein compare
LRK53_RS11005 -0.5 -1.1 Tn3 family resolvase compare
LRK53_RS17880 -0.5 -2.2 exodeoxyribonuclease III compare
LRK53_RS07040 -0.5 -1.7 sensor histidine kinase compare
LRK53_RS03815 -0.5 -2.1 thiamine phosphate synthase compare
LRK53_RS05295 -0.5 -4.7 phosphoribosylformylglycinamidine synthase compare
LRK53_RS16710 -0.5 -4.8 penicillin-binding protein 1A compare
LRK53_RS09760 -0.5 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS00485 -0.5 -1.6 glycosyltransferase compare
LRK53_RS00775 -0.5 -3.1 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS09340 -0.5 -1.6 hypothetical protein compare
LRK53_RS14105 -0.5 -3.0 sensor histidine kinase compare
LRK53_RS12555 -0.5 -3.0 formimidoylglutamate deiminase compare
LRK53_RS13450 -0.5 -2.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK53_RS14725 -0.5 -1.0 DUF2249 domain-containing protein compare
LRK53_RS08120 -0.5 -1.6 CopL family metal-binding regulatory protein compare
LRK53_RS09540 -0.5 -2.9 protease modulator HflC compare
LRK53_RS17760 -0.5 -2.8 carboxy terminal-processing peptidase compare
LRK53_RS17995 -0.5 -2.3 acetyl-CoA C-acetyltransferase compare
LRK53_RS03410 -0.5 -1.0 SCP2 sterol-binding domain-containing protein compare
LRK53_RS01980 -0.5 -1.8 very short patch repair endonuclease compare
LRK53_RS13190 -0.5 -2.1 SAM-dependent methyltransferase compare
LRK53_RS04265 -0.5 -2.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS16635 -0.5 -1.1 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS04245 -0.5 -3.2 beta-agarase compare
LRK53_RS08660 -0.5 -1.3 YajG family lipoprotein compare
LRK53_RS18305 -0.5 -2.8 PD-(D/E)XK nuclease family protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in stress experiments

For stress Manganese (II) chloride tetrahydrate across organisms