Experiment set3S199 for Rhodanobacter sp000427505 FW510-R12

Compare to:

R2A_PIPES with Cadmium chloride hemipentahydrate 128 uM

200 most important genes:

  gene name fitness t score description  
LRK53_RS07490 -3.6 -2.5 phytoene synthase compare
LRK53_RS03700 -2.9 -1.5 transcription termination factor Rho compare
LRK53_RS03695 -2.9 -8.0 glutamate--cysteine ligase compare
LRK53_RS06820 -2.6 -3.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS05125 -2.5 -14.0 potassium transporter Kup compare
LRK53_RS09520 -2.4 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS03410 -2.3 -3.4 SCP2 sterol-binding domain-containing protein compare
LRK53_RS00740 -2.1 -2.8 MarR family transcriptional regulator compare
LRK53_RS16290 -2.1 -2.8 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS04185 -2.1 -3.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS11455 -2.1 -3.4 NfuA family Fe-S biogenesis protein compare
LRK53_RS12970 -1.9 -2.2 RNA 2',3'-cyclic phosphodiesterase compare
LRK53_RS04190 -1.9 -3.9 dihydrolipoyl dehydrogenase compare
LRK53_RS11155 -1.9 -4.1 glutamine-hydrolyzing GMP synthase compare
LRK53_RS04640 -1.8 -2.2 helix-turn-helix domain-containing protein compare
LRK53_RS07025 -1.8 -1.6 ABC transporter ATP-binding protein compare
LRK53_RS07020 -1.7 -2.3 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS06500 -1.7 -1.2 disulfide bond formation protein B compare
LRK53_RS01630 -1.7 -2.6 protein-disulfide reductase DsbD compare
LRK53_RS17205 -1.7 -4.4 fumarylacetoacetate hydrolase family protein compare
LRK53_RS03065 -1.7 -1.2 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS04370 -1.6 -5.8 cystathionine gamma-synthase compare
LRK53_RS05740 -1.6 -1.4 chemotaxis protein CheW compare
LRK53_RS07040 -1.6 -3.9 sensor histidine kinase compare
LRK53_RS01380 -1.6 -10.9 ABC transporter permease compare
LRK53_RS03080 -1.6 -1.5 acetolactate synthase small subunit compare
LRK53_RS16710 -1.6 -14.0 penicillin-binding protein 1A compare
LRK53_RS08795 -1.5 -2.0 MBL fold metallo-hydrolase compare
LRK53_RS08205 -1.5 -1.7 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS11330 -1.5 -1.0 (d)CMP kinase compare
LRK53_RS01385 -1.5 -6.8 ABC transporter ATP-binding protein compare
LRK53_RS00915 -1.5 -1.4 Na+/H+ antiporter subunit C compare
LRK53_RS04075 -1.5 -10.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS07485 -1.5 -3.9 phosphoglycolate phosphatase compare
LRK53_RS05760 -1.5 -1.0 chemotaxis protein CheW compare
LRK53_RS12270 -1.4 -5.5 5'/3'-nucleotidase SurE compare
LRK53_RS13510 -1.4 -6.6 polynucleotide adenylyltransferase PcnB compare
LRK53_RS13415 -1.4 -1.7 DUF2059 domain-containing protein compare
LRK53_RS02945 -1.4 -9.0 phosphoribosylamine--glycine ligase compare
LRK53_RS03050 -1.4 -2.1 ComF family protein compare
LRK53_RS09955 -1.4 -1.2 thioredoxin family protein compare
LRK53_RS03745 -1.4 -7.3 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS05015 -1.4 -3.0 LacI family DNA-binding transcriptional regulator compare
LRK53_RS16520 -1.4 -3.2 HAMP domain-containing histidine kinase compare
LRK53_RS14475 -1.4 -1.2 hypothetical protein compare
LRK53_RS04315 -1.4 -8.5 pyridoxal-phosphate dependent enzyme compare
LRK53_RS08100 -1.3 -1.7 MBL fold metallo-hydrolase compare
LRK53_RS05175 -1.3 -1.5 7-cyano-7-deazaguanine synthase QueC compare
LRK53_RS02545 -1.3 -2.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS16510 -1.2 -1.1 DUF4124 domain-containing protein compare
LRK53_RS14290 -1.2 -2.0 penicillin acylase family protein compare
LRK53_RS04505 -1.2 -1.6 met regulon transcriptional regulator MetJ compare
LRK53_RS02285 -1.2 -0.8 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS14770 -1.2 -1.6 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS09265 -1.2 -1.1 GntR family transcriptional regulator compare
LRK53_RS06945 -1.2 -3.0 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS18120 -1.2 -2.0 energy transducer TonB compare
LRK53_RS05110 -1.2 -3.0 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK53_RS11780 -1.2 -1.1 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS14110 -1.2 -1.1 GNAT family N-acetyltransferase compare
LRK53_RS03720 -1.2 -2.3 permease-like cell division protein FtsX compare
LRK53_RS12740 -1.1 -2.2 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS09830 -1.1 -1.7 phosphoglycerate mutase compare
LRK53_RS14400 -1.1 -1.0 TetR family transcriptional regulator compare
LRK53_RS08310 -1.1 -8.7 chorismate synthase compare
LRK53_RS01235 -1.1 -1.5 monovalent cation:proton antiporter-2 (CPA2) family protein compare
LRK53_RS16495 -1.1 -0.8 adenosylhomocysteinase compare
LRK53_RS14785 -1.1 -1.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS05560 -1.1 -2.5 threonine/serine exporter family protein compare
LRK53_RS09655 -1.1 -5.2 ribonuclease R compare
LRK53_RS05220 -1.1 -2.4 nucleoside deaminase compare
LRK53_RS07450 -1.1 -1.0 50S ribosomal protein L19 compare
LRK53_RS12260 -1.1 -6.1 VTT domain-containing protein compare
LRK53_RS13565 -1.1 -1.2 isocitrate dehydrogenase compare
LRK53_RS05580 -1.1 -3.0 phosphatidylcholine/phosphatidylserine synthase compare
LRK53_RS07925 -1.1 -3.5 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS08695 -1.1 -7.4 amidophosphoribosyltransferase compare
LRK53_RS05060 -1.1 -1.4 hypothetical protein compare
LRK53_RS07035 -1.1 -2.1 TolC family protein compare
LRK53_RS18830 -1.1 -1.7 TraV family lipoprotein compare
LRK53_RS08910 -1.1 -1.9 endolytic transglycosylase MltG compare
LRK53_RS06850 -1.1 -0.9 protein translocase subunit SecD compare
LRK53_RS06545 -1.1 -1.0 TIGR02099 family protein compare
LRK53_RS14095 -1.0 -9.8 polyketide cyclase compare
LRK53_RS14455 -1.0 -1.6 ATP-binding protein compare
LRK53_RS06715 -1.0 -1.3 [protein-PII] uridylyltransferase compare
LRK53_RS13695 -1.0 -1.5 response regulator compare
LRK53_RS16160 -1.0 -1.6 hypothetical protein compare
LRK53_RS15705 -1.0 -5.2 RNA polymerase factor sigma-54 compare
LRK53_RS16600 -1.0 -1.2 fumarylacetoacetate hydrolase family protein compare
LRK53_RS15895 -1.0 -7.6 glycosyltransferase compare
LRK53_RS00395 -1.0 -1.7 SDR family oxidoreductase compare
LRK53_RS09090 -1.0 -5.2 polyribonucleotide nucleotidyltransferase compare
LRK53_RS01585 -1.0 -1.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS16900 -1.0 -2.5 ribose-5-phosphate isomerase RpiA compare
LRK53_RS13380 -1.0 -1.5 hypothetical protein compare
LRK53_RS05200 -0.9 -2.0 type IV pilus modification protein PilV compare
LRK53_RS16055 -0.9 -3.3 hypothetical protein compare
LRK53_RS15970 -0.9 -5.5 molybdopterin-dependent oxidoreductase compare
LRK53_RS13040 -0.9 -2.7 hypothetical protein compare
LRK53_RS06930 -0.9 -1.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS04795 -0.9 -2.0 IS5 family transposase compare
LRK53_RS11035 -0.9 -1.0 major capsid protein compare
LRK53_RS03330 -0.9 -0.8 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS14100 -0.9 -1.8 response regulator transcription factor compare
LRK53_RS14760 -0.9 -4.7 lysophospholipid acyltransferase family protein compare
LRK53_RS16995 -0.9 -1.1 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS16300 -0.9 -1.4 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS06925 -0.9 -1.0 MtnX-like HAD-IB family phosphatase compare
LRK53_RS13060 -0.9 -1.2 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS11285 -0.9 -1.3 tRNA-binding protein compare
LRK53_RS15060 -0.9 -0.8 flagellar export protein FliJ compare
LRK53_RS18860 -0.9 -1.8 hypothetical protein compare
LRK53_RS15715 -0.9 -7.5 HPr(Ser) kinase/phosphatase compare
LRK53_RS08125 -0.9 -8.0 TonB-dependent receptor compare
LRK53_RS16675 -0.8 -1.2 DUF58 domain-containing protein compare
LRK53_RS10680 -0.8 -1.7 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS12250 -0.8 -4.6 Mth938-like domain-containing protein compare
LRK53_RS03160 -0.8 -1.5 homoserine kinase compare
LRK53_RS09805 -0.8 -2.9 TraB/GumN family protein compare
LRK53_RS07085 -0.8 -1.5 YggS family pyridoxal phosphate-dependent enzyme compare
LRK53_RS10955 -0.8 -3.7 phosphopyruvate hydratase compare
LRK53_RS04070 -0.8 -0.9 NADP-dependent malic enzyme compare
LRK53_RS17130 -0.8 -7.7 energy transducer TonB compare
LRK53_RS12800 -0.8 -1.2 DUF4190 domain-containing protein compare
LRK53_RS01660 -0.8 -1.5 hypothetical protein compare
LRK53_RS15250 -0.8 -3.9 membrane assembly protein AsmA compare
LRK53_RS09725 -0.8 -3.4 ATP-dependent Clp protease adapter ClpS compare
LRK53_RS15675 -0.8 -1.4 BolA/IbaG family iron-sulfur metabolism protein compare
LRK53_RS02580 -0.8 -3.1 c-type cytochrome compare
LRK53_RS07045 -0.8 -1.0 response regulator compare
LRK53_RS15870 -0.8 -2.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK53_RS10980 -0.8 -1.1 hypothetical protein compare
LRK53_RS09595 -0.8 -0.9 hypothetical protein compare
LRK53_RS00940 -0.8 -0.8 hypothetical protein compare
LRK53_RS17580 -0.8 -2.3 GNAT family N-acetyltransferase compare
LRK53_RS03155 -0.8 -2.5 threonine synthase compare
LRK53_RS07920 -0.8 -2.1 homocysteine S-methyltransferase family protein compare
LRK53_RS09170 -0.8 -1.1 cupin domain-containing protein compare
LRK53_RS03545 -0.8 -0.7 DUF2249 domain-containing protein compare
LRK53_RS09230 -0.8 -1.3 class II fumarate hydratase compare
LRK53_RS17865 -0.7 -0.8 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS13525 -0.7 -2.3 ferredoxin family protein compare
LRK53_RS02645 -0.7 -1.7 LysM peptidoglycan-binding domain-containing protein compare
LRK53_RS12245 -0.7 -1.4 ribosome assembly RNA-binding protein YhbY compare
LRK53_RS14950 -0.7 -1.3 flagellar hook-length control protein FliK compare
LRK53_RS02300 -0.7 -1.9 hypothetical protein compare
LRK53_RS09240 -0.7 -1.2 DUF4386 domain-containing protein compare
LRK53_RS04475 -0.7 -3.6 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS01695 -0.7 -2.1 zinc-finger domain-containing protein compare
LRK53_RS13595 -0.7 -3.1 polyphosphate kinase 1 compare
LRK53_RS13625 -0.7 -0.8 carbon storage regulator CsrA compare
LRK53_RS05725 -0.7 -4.5 glutathione synthase compare
LRK53_RS05635 -0.7 -1.2 YbjQ family protein compare
LRK53_RS05170 -0.7 -1.0 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS10985 -0.7 -1.9 phosphatase PAP2 family protein compare
LRK53_RS00295 -0.7 -1.4 hypothetical protein compare
LRK53_RS12265 -0.7 -1.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK53_RS09730 -0.7 -2.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS07670 -0.7 -2.6 NUDIX domain-containing protein compare
LRK53_RS11790 -0.7 -1.0 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS04180 -0.7 -1.8 ABC transporter ATP-binding protein compare
LRK53_RS11120 -0.7 -4.4 hypothetical protein compare
LRK53_RS17510 -0.7 -2.8 hypothetical protein compare
LRK53_RS15655 -0.7 -2.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS09085 -0.7 -0.7 30S ribosomal protein S15 compare
LRK53_RS14800 -0.7 -2.9 DUF1631 domain-containing protein compare
LRK53_RS14020 -0.7 -4.8 DUF2007 domain-containing protein compare
LRK53_RS11400 -0.7 -1.8 DNA repair protein RecN compare
LRK53_RS00910 -0.7 -3.2 monovalent cation/H+ antiporter subunit A compare
LRK53_RS02255 -0.7 -1.2 3-oxoacyl-ACP reductase FabG compare
LRK53_RS00240 -0.7 -1.8 DUF3820 family protein compare
LRK53_RS11190 -0.7 -1.4 type IV pilus biogenesis/stability protein PilW compare
LRK53_RS15875 -0.7 -0.7 hypothetical protein compare
LRK53_RS13070 -0.7 -1.5 OsmC family protein compare
LRK53_RS01170 -0.7 -5.2 thiol:disulfide interchange protein DsbA/DsbL compare
LRK53_RS08225 -0.7 -1.2 DeoR/GlpR family DNA-binding transcription regulator compare
LRK53_RS07470 -0.7 -3.3 TRZ/ATZ family hydrolase compare
LRK53_RS06955 -0.7 -3.9 GNAT family N-acetyltransferase compare
LRK53_RS12025 -0.7 -1.1 DUF2058 family protein compare
LRK53_RS03730 -0.7 -2.1 uracil-DNA glycosylase compare
LRK53_RS09475 -0.7 -4.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS13780 -0.7 -1.4 acetoacetyl-CoA reductase compare
LRK53_RS06770 -0.7 -3.0 integration host factor subunit alpha compare
LRK53_RS11300 -0.7 -1.4 polysaccharide biosynthesis protein compare
LRK53_RS00635 -0.7 -2.2 HAD-IB family hydrolase compare
LRK53_RS00145 -0.7 -2.3 DJ-1/PfpI family protein compare
LRK53_RS00370 -0.7 -2.4 DNA starvation/stationary phase protection protein compare
LRK53_RS07795 -0.6 -2.0 GspH/FimT family pseudopilin compare
LRK53_RS02320 -0.6 -2.7 DUF484 family protein compare
LRK53_RS11990 -0.6 -3.4 translation elongation factor 4 compare
LRK53_RS07645 -0.6 -1.9 SDR family oxidoreductase compare
LRK53_RS02295 -0.6 -1.9 ribokinase compare
LRK53_RS01570 -0.6 -0.7 DNA polymerase I compare
LRK53_RS04470 -0.6 -2.1 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK53_RS12150 -0.6 -2.6 trigger factor compare
LRK53_RS05265 -0.6 -1.0 hypothetical protein compare
LRK53_RS17995 -0.6 -2.1 acetyl-CoA C-acetyltransferase compare
LRK53_RS11025 -0.6 -1.5 hypothetical protein compare
LRK53_RS04305 -0.6 -2.2 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cadmium chloride hemipentahydrate in Rhodanobacter sp000427505 FW510-R12

For stress Cadmium chloride hemipentahydrate across organisms