Experiment set3S198 for Rhodanobacter sp000427505 FW510-R12

Compare to:

R2A_PIPES with Cadmium chloride hemipentahydrate 64 uM

200 most important genes:

  gene name fitness t score description  
LRK53_RS06820 -3.4 -2.3 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS03695 -3.4 -7.2 glutamate--cysteine ligase compare
LRK53_RS05125 -3.3 -13.4 potassium transporter Kup compare
LRK53_RS07020 -3.3 -2.2 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS07490 -3.2 -3.8 phytoene synthase compare
LRK53_RS06945 -3.0 -2.1 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK53_RS11790 -2.5 -1.7 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS07030 -2.5 -3.4 ABC transporter permease compare
LRK53_RS11155 -2.5 -4.1 glutamine-hydrolyzing GMP synthase compare
LRK53_RS09085 -2.5 -2.3 30S ribosomal protein S15 compare
LRK53_RS06925 -2.4 -1.6 MtnX-like HAD-IB family phosphatase compare
LRK53_RS14100 -2.4 -3.1 response regulator transcription factor compare
LRK53_RS07035 -2.3 -2.3 TolC family protein compare
LRK53_RS06955 -2.3 -8.7 GNAT family N-acetyltransferase compare
LRK53_RS03715 -2.2 -1.5 cell division ATP-binding protein FtsE compare
LRK53_RS07045 -2.2 -1.5 response regulator compare
LRK53_RS14105 -2.2 -9.0 sensor histidine kinase compare
LRK53_RS04370 -2.1 -7.6 cystathionine gamma-synthase compare
LRK53_RS13695 -2.1 -2.4 response regulator compare
LRK53_RS13380 -2.1 -2.4 hypothetical protein compare
LRK53_RS06715 -2.1 -2.7 [protein-PII] uridylyltransferase compare
LRK53_RS07040 -2.0 -5.2 sensor histidine kinase compare
LRK53_RS00690 -2.0 -1.9 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS09520 -2.0 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK53_RS07450 -2.0 -1.2 50S ribosomal protein L19 compare
LRK53_RS06930 -2.0 -1.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS01380 -2.0 -13.5 ABC transporter permease compare
LRK53_RS04185 -1.9 -4.2 dihydrolipoyllysine-residue acetyltransferase compare
LRK53_RS01385 -1.9 -8.7 ABC transporter ATP-binding protein compare
LRK53_RS07510 -1.9 -8.3 TonB-dependent siderophore receptor compare
LRK53_RS11455 -1.8 -3.6 NfuA family Fe-S biogenesis protein compare
LRK53_RS14770 -1.8 -2.3 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS05725 -1.8 -9.5 glutathione synthase compare
LRK53_RS01695 -1.7 -4.7 zinc-finger domain-containing protein compare
LRK53_RS01110 -1.7 -10.6 TonB-dependent receptor compare
LRK53_RS04200 -1.7 -2.2 hypothetical protein compare
LRK53_RS18860 -1.6 -2.6 hypothetical protein compare
LRK53_RS05295 -1.6 -13.5 phosphoribosylformylglycinamidine synthase compare
LRK53_RS04075 -1.6 -11.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK53_RS07485 -1.6 -4.8 phosphoglycolate phosphatase compare
LRK53_RS15715 -1.6 -13.4 HPr(Ser) kinase/phosphatase compare
LRK53_RS03745 -1.6 -8.7 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS04315 -1.6 -10.2 pyridoxal-phosphate dependent enzyme compare
LRK53_RS01630 -1.5 -3.3 protein-disulfide reductase DsbD compare
LRK53_RS09830 -1.5 -1.8 phosphoglycerate mutase compare
LRK53_RS05110 -1.5 -4.0 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK53_RS09315 -1.5 -2.2 pseudouridine synthase compare
LRK53_RS11330 -1.5 -1.4 (d)CMP kinase compare
LRK53_RS05220 -1.5 -3.4 nucleoside deaminase compare
LRK53_RS02945 -1.5 -9.5 phosphoribosylamine--glycine ligase compare
LRK53_RS16300 -1.5 -2.6 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS02285 -1.4 -1.4 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS17130 -1.4 -13.3 energy transducer TonB compare
LRK53_RS18080 -1.4 -3.9 glucose-6-phosphate isomerase compare
LRK53_RS16900 -1.4 -3.4 ribose-5-phosphate isomerase RpiA compare
LRK53_RS03095 -1.4 -2.8 dihydroxy-acid dehydratase compare
LRK53_RS14365 -1.4 -1.4 hypothetical protein compare
LRK53_RS06570 -1.4 -0.9 DUF615 domain-containing protein compare
LRK53_RS12280 -1.3 -3.2 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS11285 -1.3 -1.9 tRNA-binding protein compare
LRK53_RS06850 -1.3 -1.2 protein translocase subunit SecD compare
LRK53_RS08695 -1.3 -8.9 amidophosphoribosyltransferase compare
LRK53_RS17120 -1.3 -8.5 porin family protein compare
LRK53_RS00915 -1.3 -1.4 Na+/H+ antiporter subunit C compare
LRK53_RS11190 -1.3 -2.1 type IV pilus biogenesis/stability protein PilW compare
LRK53_RS05015 -1.3 -3.4 LacI family DNA-binding transcriptional regulator compare
LRK53_RS06545 -1.3 -1.2 TIGR02099 family protein compare
LRK53_RS08795 -1.3 -1.6 MBL fold metallo-hydrolase compare
LRK53_RS11120 -1.3 -7.7 hypothetical protein compare
LRK53_RS07245 -1.3 -1.4 ribosome silencing factor compare
LRK53_RS04310 -1.2 -2.1 YdcH family protein compare
LRK53_RS08835 -1.2 -8.6 Slp family lipoprotein compare
LRK53_RS02950 -1.2 -11.9 YbaY family lipoprotein compare
LRK53_RS06770 -1.2 -5.4 integration host factor subunit alpha compare
LRK53_RS00945 -1.2 -1.9 helix-turn-helix domain-containing protein compare
LRK53_RS08310 -1.2 -9.8 chorismate synthase compare
LRK53_RS14960 -1.2 -1.7 DUF2802 domain-containing protein compare
LRK53_RS16495 -1.2 -1.4 adenosylhomocysteinase compare
LRK53_RS04155 -1.2 -2.0 DUF2383 domain-containing protein compare
LRK53_RS16160 -1.2 -2.2 hypothetical protein compare
LRK53_RS07310 -1.2 -2.0 DEAD/DEAH box helicase compare
LRK53_RS10085 -1.2 -1.5 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS04190 -1.2 -3.4 dihydrolipoyl dehydrogenase compare
LRK53_RS16165 -1.1 -3.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS16520 -1.1 -3.0 HAMP domain-containing histidine kinase compare
LRK53_RS12465 -1.1 -2.6 helix-turn-helix domain-containing protein compare
LRK53_RS08665 -1.1 -2.4 hypothetical protein compare
LRK53_RS17760 -1.1 -5.4 carboxy terminal-processing peptidase compare
LRK53_RS13595 -1.1 -4.9 polyphosphate kinase 1 compare
LRK53_RS07915 -1.1 -4.9 methionine synthase compare
LRK53_RS02150 -1.1 -1.7 6-carboxytetrahydropterin synthase QueD compare
LRK53_RS02380 -1.1 -1.8 hypothetical protein compare
LRK53_RS09730 -1.1 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS04475 -1.1 -4.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK53_RS17205 -1.1 -4.0 fumarylacetoacetate hydrolase family protein compare
LRK53_RS04265 -1.1 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS01170 -1.1 -8.3 thiol:disulfide interchange protein DsbA/DsbL compare
LRK53_RS09660 -1.0 -0.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK53_RS12250 -1.0 -6.0 Mth938-like domain-containing protein compare
LRK53_RS15705 -1.0 -5.6 RNA polymerase factor sigma-54 compare
LRK53_RS00240 -1.0 -3.3 DUF3820 family protein compare
LRK53_RS09725 -1.0 -4.4 ATP-dependent Clp protease adapter ClpS compare
LRK53_RS15730 -1.0 -2.2 HPr family phosphocarrier protein compare
LRK53_RS18770 -1.0 -1.0 hypothetical protein compare
LRK53_RS05370 -1.0 -2.0 hypothetical protein compare
LRK53_RS06175 -1.0 -1.6 acylphosphatase compare
LRK53_RS12740 -1.0 -1.9 cytochrome c-type biogenesis protein CcmH compare
LRK53_RS14760 -1.0 -5.4 lysophospholipid acyltransferase family protein compare
LRK53_RS16790 -1.0 -1.7 YicC family protein compare
LRK53_RS02535 -1.0 -4.7 DUF481 domain-containing protein compare
LRK53_RS03720 -1.0 -2.8 permease-like cell division protein FtsX compare
LRK53_RS14095 -1.0 -9.5 polyketide cyclase compare
LRK53_RS17310 -1.0 -3.1 VOC family protein compare
LRK53_RS15170 -1.0 -2.6 flagellar basal body rod protein FlgC compare
LRK53_RS15725 -1.0 -7.7 PTS fructose transporter subunit IIA compare
LRK53_RS14400 -1.0 -1.0 TetR family transcriptional regulator compare
LRK53_RS10035 -1.0 -1.0 hypothetical protein compare
LRK53_RS07775 -1.0 -4.7 helix-turn-helix domain-containing protein compare
LRK53_RS01235 -1.0 -1.4 monovalent cation:proton antiporter-2 (CPA2) family protein compare
LRK53_RS09760 -1.0 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK53_RS15755 -1.0 -1.6 SDR family oxidoreductase compare
LRK53_RS05615 -1.0 -2.1 WGR domain-containing protein compare
LRK53_RS02545 -0.9 -1.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK53_RS01585 -0.9 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS07385 -0.9 -4.2 MalM family protein compare
LRK53_RS00695 -0.9 -5.4 TonB-dependent vitamin B12 receptor compare
LRK53_RS08205 -0.9 -1.2 RnfABCDGE type electron transport complex subunit B compare
LRK53_RS05965 -0.9 -6.2 glycosyltransferase family 2 protein compare
LRK53_RS04505 -0.9 -1.8 met regulon transcriptional regulator MetJ compare
LRK53_RS14800 -0.9 -4.1 DUF1631 domain-containing protein compare
LRK53_RS03330 -0.9 -1.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS07410 -0.9 -1.8 50S ribosomal protein L9 compare
LRK53_RS17900 -0.9 -1.5 dUTP diphosphatase compare
LRK53_RS02365 -0.9 -6.7 RimK family protein compare
LRK53_RS13625 -0.9 -1.0 carbon storage regulator CsrA compare
LRK53_RS12270 -0.9 -4.2 5'/3'-nucleotidase SurE compare
LRK53_RS05560 -0.9 -2.4 threonine/serine exporter family protein compare
LRK53_RS15655 -0.9 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS12260 -0.9 -5.5 VTT domain-containing protein compare
LRK53_RS07975 -0.9 -6.6 acyl-CoA dehydrogenase family protein compare
LRK53_RS12800 -0.9 -1.5 DUF4190 domain-containing protein compare
LRK53_RS08125 -0.9 -8.3 TonB-dependent receptor compare
LRK53_RS17150 -0.9 -3.0 ferredoxin family protein compare
LRK53_RS06000 -0.9 -4.8 hypothetical protein compare
LRK53_RS11185 -0.9 -0.8 DUF4115 domain-containing protein compare
LRK53_RS17220 -0.9 -2.4 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS09655 -0.9 -5.1 ribonuclease R compare
LRK53_RS07470 -0.9 -4.4 TRZ/ATZ family hydrolase compare
LRK53_RS03010 -0.9 -1.1 hypothetical protein compare
LRK53_RS16510 -0.9 -0.9 DUF4124 domain-containing protein compare
LRK53_RS14020 -0.9 -6.2 DUF2007 domain-containing protein compare
LRK53_RS00025 -0.9 -7.9 tetratricopeptide repeat protein compare
LRK53_RS16675 -0.9 -1.8 DUF58 domain-containing protein compare
LRK53_RS01095 -0.9 -3.3 lipid A biosynthesis acyltransferase compare
LRK53_RS09205 -0.8 -3.5 cysteine synthase A compare
LRK53_RS01960 -0.8 -5.1 RNA pyrophosphohydrolase compare
LRK53_RS09175 -0.8 -6.9 sulfite exporter TauE/SafE family protein compare
LRK53_RS13510 -0.8 -4.9 polynucleotide adenylyltransferase PcnB compare
LRK53_RS07105 -0.8 -2.2 RNA polymerase-associated protein RapA compare
LRK53_RS08825 -0.8 -1.8 recombination mediator RecR compare
LRK53_RS06035 -0.8 -0.9 helix-turn-helix domain-containing protein compare
LRK53_RS14190 -0.8 -1.4 MAPEG family protein compare
LRK53_RS06860 -0.8 -1.3 nucleotidyltransferase family protein compare
LRK53_RS17875 -0.8 -2.5 MFS transporter compare
LRK53_RS09980 -0.8 -1.0 hypothetical protein compare
LRK53_RS00150 -0.8 -2.7 hypothetical protein compare
LRK53_RS07420 -0.8 -1.6 DNA repair protein RadA compare
LRK53_RS07925 -0.8 -2.9 metalloregulator ArsR/SmtB family transcription factor compare
LRK53_RS12635 -0.8 -4.3 folate-binding protein YgfZ compare
LRK53_RS09595 -0.8 -1.1 hypothetical protein compare
LRK53_RS13525 -0.8 -2.7 ferredoxin family protein compare
LRK53_RS12890 -0.8 -2.8 hypothetical protein compare
LRK53_RS11990 -0.8 -4.2 translation elongation factor 4 compare
LRK53_RS11780 -0.8 -0.5 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS09090 -0.8 -4.5 polyribonucleotide nucleotidyltransferase compare
LRK53_RS12440 -0.8 -1.6 hypothetical protein compare
LRK53_RS12370 -0.8 -0.9 VOC family protein compare
LRK53_RS14130 -0.8 -1.3 hypothetical protein compare
LRK53_RS15260 -0.8 -3.9 oxidative damage protection protein compare
LRK53_RS16710 -0.8 -7.2 penicillin-binding protein 1A compare
LRK53_RS16865 -0.8 -3.6 aminopeptidase P N-terminal domain-containing protein compare
LRK53_RS06225 -0.8 -3.1 tetratricopeptide repeat protein compare
LRK53_RS02445 -0.8 -3.0 LacI family transcriptional regulator compare
LRK53_RS14790 -0.7 -1.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS00975 -0.7 -1.9 hypothetical protein compare
LRK53_RS00930 -0.7 -2.0 K+/H+ antiporter subunit F compare
LRK53_RS14110 -0.7 -1.1 GNAT family N-acetyltransferase compare
LRK53_RS04390 -0.7 -1.6 glycosyltransferase family 2 protein compare
LRK53_RS06865 -0.7 -3.5 phosphotransferase compare
LRK53_RS13925 -0.7 -2.2 NrsF family protein compare
LRK53_RS09195 -0.7 -5.0 LysR substrate-binding domain-containing protein compare
LRK53_RS08910 -0.7 -1.7 endolytic transglycosylase MltG compare
LRK53_RS14290 -0.7 -1.2 penicillin acylase family protein compare
LRK53_RS02580 -0.7 -3.2 c-type cytochrome compare
LRK53_RS00395 -0.7 -1.6 SDR family oxidoreductase compare
LRK53_RS15180 -0.7 -1.3 chemotaxis protein compare
LRK53_RS17895 -0.7 -0.7 phosphomannomutase/phosphoglucomutase compare
LRK53_RS04240 -0.7 -5.4 amino acid permease compare
LRK53_RS02355 -0.7 -2.1 diphosphomevalonate decarboxylase compare
LRK53_RS15900 -0.7 -4.7 autotransporter assembly complex protein TamA compare


Specific Phenotypes

For 9 genes in this experiment

For stress Cadmium chloride hemipentahydrate in Rhodanobacter sp000427505 FW510-R12

For stress Cadmium chloride hemipentahydrate across organisms