Experiment set3S159 for Rhizobium sp. OAE497

R2A with 3-octanone 10.6206 mM

Group: stress
Media: R2A + 3-octanone (10.6206 mM)
Culturing: Rhizobium_OAE497_ML5, tube, Aerobic, at 30 (C), shaken=200 rpm
By: Cat Adams on 2/21/24
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate

Specific Phenotypes

For 8 genes in this experiment

For stress 3-octanone in Rhizobium sp. OAE497

For stress 3-octanone across organisms

SEED Subsystems

Subsystem	#Specific
Lacto-N-Biose I and Galacto-N-Biose Metabolic Pathway	1
Lactose and Galactose Uptake and Utilization	1
N-linked Glycosylation in Bacteria	1
Rhamnose containing glycans	1
linker unit-arabinogalactan synthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Nucleotide sugars metabolism
• Galactose metabolism
• Aminophosphonate metabolism
• High-mannose type N-glycan biosynthesis
• Glycerophospholipid metabolism
• Sphingolipid metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
UDP-α-D-galactose biosynthesis	1	1	1
UDP-N-acetyl-D-galactosamine biosynthesis I	1	1	1
UDP-α-D-galactofuranose biosynthesis	2	1	1
D-galactose detoxification	3	1	1
D-galactose degradation I (Leloir pathway)	5	3	1
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis	6	4	1
UDP-N-acetyl-D-galactosamine biosynthesis II	7	5	1
stachyose degradation	7	4	1
UDP-sugars interconversion	9	4	1
teichuronic acid biosynthesis (B. subtilis 168)	9	2	1
tunicamycin biosynthesis	9	2	1
colanic acid building blocks biosynthesis	11	7	1
mycolyl-arabinogalactan-peptidoglycan complex biosynthesis	18	1	1
superpathway of mycolyl-arabinogalactan-peptidoglycan complex biosynthesis	33	12	1