Experiment set3S122 for Rhizobium sp. OAE497

Compare to:

R2A no stress control

200 most important genes:

  gene name fitness t score description  
ABIE40_RS15730 -3.1 -3.7 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS09170 -3.0 -4.6 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS11495 -2.9 -4.4 acetolactate synthase 3 large subunit compare
ABIE40_RS27100 -2.8 -1.0 type II toxin-antitoxin system VapC family toxin compare
ABIE40_RS10720 -2.8 -2.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS19365 -2.7 -2.6 double-strand break repair protein AddB compare
ABIE40_RS18300 -2.7 -9.0 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS05385 -2.6 -1.8 Nramp family divalent metal transporter compare
ABIE40_RS04485 -2.5 -1.6 Rrf2 family transcriptional regulator compare
ABIE40_RS02925 -2.5 -3.2 hypothetical protein compare
ABIE40_RS05685 -2.5 -10.5 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS10155 -2.4 -2.2 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS28310 -2.4 -2.6 DoxX family protein compare
ABIE40_RS06720 -2.4 -2.7 transcriptional regulator NrdR compare
ABIE40_RS27015 -2.3 -1.7 ATP-dependent DNA ligase compare
ABIE40_RS09095 -2.3 -2.2 PAS domain-containing sensor histidine kinase compare
ABIE40_RS05695 -2.3 -1.6 Do family serine endopeptidase compare
ABIE40_RS27685 -2.3 -1.0 hypothetical protein compare
ABIE40_RS15920 -2.3 -1.5 50S ribosomal protein L31 compare
ABIE40_RS03250 -2.2 -2.2 hypothetical protein compare
ABIE40_RS29185 -2.1 -3.2 hypothetical protein compare
ABIE40_RS11905 -2.1 -1.5 DnaJ family molecular chaperone compare
ABIE40_RS02345 -2.1 -2.0 2'-deoxycytidine 5'-triphosphate deaminase compare
ABIE40_RS06775 -2.1 -2.3 DUF177 domain-containing protein compare
ABIE40_RS05690 -2.0 -4.9 cytochrome c-type biogenesis protein compare
ABIE40_RS00340 -2.0 -2.7 30S ribosome-binding factor RbfA compare
ABIE40_RS08005 -2.0 -1.3 dihydroxy-acid dehydratase compare
ABIE40_RS05680 -2.0 -5.4 cytochrome c maturation protein CcmE compare
ABIE40_RS28165 -1.9 -2.8 hypothetical protein compare
ABIE40_RS19360 -1.9 -3.1 double-strand break repair helicase AddA compare
ABIE40_RS27405 -1.9 -2.0 hypothetical protein compare
ABIE40_RS30655 -1.9 -1.5 hypothetical protein compare
ABIE40_RS18550 -1.9 -5.1 lysine-2,3-aminomutase-like protein compare
ABIE40_RS29890 -1.8 -2.2 amino acid ABC transporter ATP-binding protein compare
ABIE40_RS11900 -1.8 -1.8 N-acetylmuramoyl-L-alanine amidase compare
ABIE40_RS12985 -1.8 -5.9 ATP-binding protein compare
ABIE40_RS13370 -1.8 -9.3 CDF family cation efflux transporter EmfA compare
ABIE40_RS11065 -1.8 -1.7 zinc-binding dehydrogenase compare
ABIE40_RS17560 -1.8 -2.4 cell division ATP-binding protein FtsE compare
ABIE40_RS00595 -1.8 -4.6 glucokinase compare
ABIE40_RS16490 -1.8 -5.5 glycogen synthase GlgA compare
ABIE40_RS12360 -1.7 -7.2 DUF5131 family protein compare
ABIE40_RS30535 -1.7 -1.1 hypothetical protein compare
ABIE40_RS08935 -1.7 -1.1 RIP metalloprotease RseP compare
ABIE40_RS15760 -1.7 -3.9 Holliday junction branch migration DNA helicase RuvB compare
ABIE40_RS18555 -1.7 -3.2 EF-P lysine aminoacylase EpmA compare
ABIE40_RS11165 -1.7 -1.4 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS18640 -1.7 -4.8 M48 family metalloprotease compare
ABIE40_RS04845 -1.6 -11.1 S9 family peptidase compare
ABIE40_RS18220 -1.6 -2.7 4a-hydroxytetrahydrobiopterin dehydratase compare
ABIE40_RS17585 -1.6 -1.5 DUF2125 domain-containing protein compare
ABIE40_RS10755 -1.6 -1.7 hypothetical protein compare
ABIE40_RS18290 -1.6 -7.7 heme ABC transporter permease compare
ABIE40_RS19260 -1.6 -1.5 DNA polymerase III subunit epsilon compare
ABIE40_RS10425 -1.6 -4.7 ABC transporter ATP-binding protein compare
ABIE40_RS01705 -1.5 -4.9 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
ABIE40_RS00960 -1.5 -2.5 formyltetrahydrofolate deformylase compare
ABIE40_RS26805 -1.5 -1.1 chaperone modulator CbpM compare
ABIE40_RS25500 -1.5 -0.8 type II toxin-antitoxin system ParD family antitoxin compare
ABIE40_RS24875 -1.5 -6.6 bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase compare
ABIE40_RS00950 -1.5 -0.9 hypothetical protein compare
ABIE40_RS07105 -1.5 -2.0 DNA-binding protein HupB compare
ABIE40_RS11075 -1.4 -3.8 beta-ketoacyl-ACP synthase compare
ABIE40_RS09360 -1.4 -1.0 excinuclease ABC subunit UvrA compare
ABIE40_RS03125 -1.4 -1.7 rod-binding protein compare
ABIE40_RS06565 -1.4 -2.1 AI-2E family transporter compare
ABIE40_RS03935 -1.4 -3.7 exodeoxyribonuclease VII small subunit compare
ABIE40_RS27665 -1.4 -1.7 hypothetical protein compare
ABIE40_RS20445 -1.4 -1.1 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS03190 -1.4 -3.3 phosphogluconate dehydratase compare
ABIE40_RS05155 -1.4 -1.0 DUF5330 domain-containing protein compare
ABIE40_RS13155 -1.4 -9.0 ABC transporter ATP-binding protein compare
ABIE40_RS11095 -1.4 -3.3 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS15650 -1.4 -3.8 TIGR00282 family metallophosphoesterase compare
ABIE40_RS17565 -1.4 -1.3 ABC transporter permease compare
ABIE40_RS16180 -1.4 -10.9 M3 family oligoendopeptidase compare
ABIE40_RS20315 -1.4 -0.7 type II toxin-antitoxin system VapB family antitoxin compare
ABIE40_RS20440 -1.4 -1.7 cobalt-precorrin-6A reductase compare
ABIE40_RS11060 -1.4 -0.9 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS27500 -1.3 -1.8 PPC domain-containing DNA-binding protein compare
ABIE40_RS30205 -1.3 -3.1 hypothetical protein compare
ABIE40_RS21025 -1.3 -5.4 VOC family protein compare
ABIE40_RS00920 -1.3 -5.4 NlpC/P60 family protein compare
ABIE40_RS17570 -1.3 -4.7 YdcF family protein compare
ABIE40_RS10390 -1.3 -1.4 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS00155 -1.3 -7.0 ribonuclease D compare
ABIE40_RS17575 -1.3 -5.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
ABIE40_RS25080 -1.3 -3.1 ABC transporter ATP-binding protein compare
ABIE40_RS30355 -1.3 -1.5 response regulator compare
ABIE40_RS27580 -1.3 -2.8 ProQ/FINO family protein compare
ABIE40_RS22660 -1.3 -2.2 class 1b ribonucleoside-diphosphate reductase subunit alpha compare
ABIE40_RS00725 -1.2 -2.0 DNA cytosine methyltransferase compare
ABIE40_RS17290 -1.2 -4.5 peptide chain release factor N(5)-glutamine methyltransferase compare
ABIE40_RS08980 -1.2 -4.0 transcriptional repressor LexA compare
ABIE40_RS09690 -1.2 -2.1 hypothetical protein compare
ABIE40_RS14720 -1.2 -3.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABIE40_RS11720 -1.2 -6.6 aminopeptidase P family protein compare
ABIE40_RS11605 -1.2 -3.0 AsmA-like C-terminal region-containing protein compare
ABIE40_RS01205 -1.2 -5.8 exodeoxyribonuclease VII large subunit compare
ABIE40_RS12860 -1.2 -0.8 Lrp/AsnC family transcriptional regulator compare
ABIE40_RS10035 -1.1 -1.3 DUF3971 domain-containing protein compare
ABIE40_RS03780 -1.1 -6.6 TldD/PmbA family protein compare
ABIE40_RS19480 -1.1 -2.3 DUF1402 family protein compare
ABIE40_RS27740 -1.1 -2.8 hypothetical protein compare
ABIE40_RS12580 -1.1 -2.2 hypothetical protein compare
ABIE40_RS15950 -1.1 -2.0 peptidoglycan -binding protein compare
ABIE40_RS28640 -1.1 -1.7 flavodoxin family protein compare
ABIE40_RS26880 -1.1 -2.6 hypothetical protein compare
ABIE40_RS11995 -1.1 -1.0 TIGR01244 family sulfur transferase compare
ABIE40_RS15690 -1.1 -1.2 DoxX family protein compare
ABIE40_RS30835 -1.1 -2.5 cytochrome c oxidase subunit 3 compare
ABIE40_RS27625 -1.1 -3.0 PAS domain-containing protein compare
ABIE40_RS28495 -1.1 -2.4 DUF4336 domain-containing protein compare
ABIE40_RS20430 -1.1 -2.2 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS06560 -1.1 -2.8 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS05670 -1.1 -2.9 membrane protein compare
ABIE40_RS28670 -1.1 -2.2 cyclodeaminase/cyclohydrolase family protein compare
ABIE40_RS10430 -1.1 -5.5 MlaE family lipid ABC transporter permease subunit compare
ABIE40_RS22725 -1.1 -4.5 anti-sigma factor compare
ABIE40_RS04770 -1.1 -3.2 TetR/AcrR family transcriptional regulator compare
ABIE40_RS06275 -1.1 -3.3 CvpA family protein compare
ABIE40_RS30690 -1.1 -1.5 hypothetical protein compare
ABIE40_RS20460 -1.0 -1.4 precorrin-3B synthase compare
ABIE40_RS27195 -1.0 -1.9 response regulator compare
ABIE40_RS30865 -1.0 -1.0 CheR family methyltransferase compare
ABIE40_RS23685 -1.0 -2.7 hypothetical protein compare
ABIE40_RS28295 -1.0 -1.8 hypothetical protein compare
ABIE40_RS27680 -1.0 -1.8 hypothetical protein compare
ABIE40_RS23000 -1.0 -1.0 TetR/AcrR family transcriptional regulator compare
ABIE40_RS03840 -1.0 -5.2 aromatic ring-hydroxylating dioxygenase subunit alpha compare
ABIE40_RS10100 -1.0 -3.1 branched-chain amino acid ABC transporter substrate-binding protein compare
ABIE40_RS28815 -1.0 -4.0 GNAT family N-acetyltransferase compare
ABIE40_RS29240 -1.0 -1.2 cold-shock protein compare
ABIE40_RS22300 -1.0 -2.4 superoxide dismutase compare
ABIE40_RS20370 -1.0 -1.0 type II toxin-antitoxin system Phd/YefM family antitoxin compare
ABIE40_RS26055 -1.0 -2.2 type II toxin-antitoxin system VapC family toxin compare
ABIE40_RS17645 -1.0 -2.4 cobaltochelatase subunit CobT compare
ABIE40_RS07335 -1.0 -1.5 50S ribosomal protein L33 compare
ABIE40_RS04505 -1.0 -0.6 YlcI/YnfO family protein compare
ABIE40_RS15670 -1.0 -3.4 anti-sigma factor compare
ABIE40_RS11530 -1.0 -3.8 protease modulator HflC compare
ABIE40_RS16570 -1.0 -0.6 tetratricopeptide repeat protein compare
ABIE40_RS10415 -1.0 -3.3 ABC-type transport auxiliary lipoprotein family protein compare
ABIE40_RS13195 -0.9 -1.5 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS26605 -0.9 -2.0 response regulator compare
ABIE40_RS18970 -0.9 -1.2 murein hydrolase activator EnvC compare
ABIE40_RS09085 -0.9 -1.9 nitrogen regulation protein NR(II) compare
ABIE40_RS12295 -0.9 -1.8 hypothetical protein compare
ABIE40_RS27110 -0.9 -2.0 helix-turn-helix transcriptional regulator compare
ABIE40_RS27760 -0.9 -2.4 helix-turn-helix transcriptional regulator compare
ABIE40_RS19875 -0.9 -2.5 hypothetical protein compare
ABIE40_RS20435 -0.9 -1.2 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS06555 -0.9 -0.8 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS04050 -0.9 -5.7 metalloprotease TldD compare
ABIE40_RS21085 -0.9 -3.9 MurR/RpiR family transcriptional regulator compare
ABIE40_RS15550 -0.9 -3.5 heavy metal translocating P-type ATPase compare
ABIE40_RS19650 -0.9 -2.7 3-carboxy-cis,cis-muconate cycloisomerase compare
ABIE40_RS30910 -0.9 -1.9 ubiquinol oxidase subunit II compare
ABIE40_RS01510 -0.9 -1.2 NmrA family NAD(P)-binding protein compare
ABIE40_RS20450 -0.9 -1.4 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS15855 -0.9 -1.1 cell division protein ZapA compare
ABIE40_RS05665 -0.9 -0.6 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS20545 -0.9 -1.0 YbaK/EbsC family protein compare
ABIE40_RS29650 -0.9 -1.3 SDR family oxidoreductase compare
ABIE40_RS10420 -0.8 -4.1 MCE family protein compare
ABIE40_RS01055 -0.8 -3.1 translation elongation factor 4 compare
ABIE40_RS14220 -0.8 -0.9 efflux transporter outer membrane subunit compare
ABIE40_RS19135 -0.8 -3.6 heparinase II/III family protein compare
ABIE40_RS22960 -0.8 -1.5 Lrp/AsnC family transcriptional regulator compare
ABIE40_RS20360 -0.8 -4.3 urocanate hydratase compare
ABIE40_RS02075 -0.8 -4.8 ROK family transcriptional regulator compare
ABIE40_RS07320 -0.8 -1.0 DUF3572 domain-containing protein compare
ABIE40_RS11535 -0.8 -3.0 FtsH protease activity modulator HflK compare
ABIE40_RS28100 -0.8 -1.0 PRC-barrel domain-containing protein compare
ABIE40_RS26820 -0.8 -1.1 DUF982 domain-containing protein compare
ABIE40_RS05715 -0.8 -3.0 PAS domain-containing sensor histidine kinase compare
ABIE40_RS18125 -0.8 -3.5 translational GTPase TypA compare
ABIE40_RS11875 -0.8 -0.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE40_RS17650 -0.8 -2.0 cobaltochelatase subunit CobS compare
ABIE40_RS05505 -0.8 -1.2 TetR family transcriptional regulator compare
ABIE40_RS08025 -0.8 -2.1 YkvA family protein compare
ABIE40_RS30550 -0.8 -1.8 DUF2243 domain-containing protein compare
ABIE40_RS24450 -0.8 -2.5 aldo/keto reductase compare
ABIE40_RS30765 -0.8 -1.7 DUF1003 domain-containing protein compare
ABIE40_RS23585 -0.8 -1.1 hypothetical protein compare
ABIE40_RS20055 -0.8 -0.9 sugar phosphate isomerase/epimerase compare
ABIE40_RS03285 -0.8 -4.0 AsmA family protein compare
ABIE40_RS09800 -0.8 -2.9 MerR family DNA-binding transcriptional regulator compare
ABIE40_RS02920 -0.8 -4.0 helix-turn-helix transcriptional regulator compare
ABIE40_RS29225 -0.8 -1.0 hypothetical protein compare
ABIE40_RS17310 -0.8 -2.0 hypothetical protein compare
ABIE40_RS01450 -0.8 -3.5 peptide chain release factor 3 compare
ABIE40_RS12845 -0.8 -1.4 glycosyltransferase family 4 protein compare
ABIE40_RS02305 -0.8 -3.7 phosphate signaling complex protein PhoU compare
ABIE40_RS15745 -0.8 -2.4 Holliday junction branch migration protein RuvA compare
ABIE40_RS00410 -0.8 -1.5 hypothetical protein compare
ABIE40_RS23110 -0.8 -1.5 methionine ABC transporter permease compare
ABIE40_RS13905 -0.8 -1.4 4-hydroxy-tetrahydrodipicolinate reductase compare
ABIE40_RS07045 -0.8 -1.3 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE40_RS24870 -0.8 -1.0 DeoR/GlpR family DNA-binding transcription regulator compare


Specific Phenotypes

None in this experiment

For Rhizobium sp. OAE497 in r2a no stress control experiments