Experiment set3IT096 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with Ffm_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF388 -6.2 -12.6 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF3890 -5.5 -3.7 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF3888 -3.5 -5.4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF389 -2.6 -4.6 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF2690 -2.1 -2.7 Peptide transport system permease protein SapC compare
GFF1076 -2.0 -4.6 Aerobic respiration control protein arcA compare
GFF387 -1.9 -2.9 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF4647 -1.7 -8.2 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF4891 -1.6 -8.3 Transport ATP-binding protein CydD compare
GFF1303 -1.6 -1.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF384 -1.6 -4.6 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF4890 -1.6 -7.2 Transport ATP-binding protein CydC compare
GFF4646 -1.6 -7.5 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF824 -1.4 -3.3 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF2434 -1.4 -0.9 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF2758 -1.3 -1.9 FIG01045187: hypothetical protein compare
GFF1221 -1.3 -1.5 hypothetical protein compare
GFF1281 -1.2 -1.9 Head decoration protein compare
GFF3985 -1.2 -1.1 Integrase compare
GFF236 -1.2 -1.2 FIG00545237: hypothetical protein compare
GFF1634 -1.2 -3.0 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF2063 -1.1 -1.5 Inner membrane protein YfeZ compare
GFF4145 -1.1 -1.3 hypothetical protein compare
GFF4473 -1.1 -1.8 FIG01046818: hypothetical protein compare
GFF3943 -1.0 -1.1 Propanediol dehydratase small subunit (EC 4.2.1.28) compare
GFF587 -1.0 -4.1 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF352 -1.0 -1.4 FIG01048298: hypothetical protein compare
GFF3104 -1.0 -1.2 Hydrogenase maturation protease (EC 3.4.24.-) compare
GFF392 -1.0 -1.7 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF2954 -1.0 -6.1 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF2475 -1.0 -1.6 Ribonuclease III (EC 3.1.26.3) compare
GFF1699 -0.9 -2.0 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF1806 -0.9 -2.8 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF4061 -0.9 -0.9 putative periplasmic protein compare
GFF2418 -0.9 -2.1 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) compare
GFF3364 -0.9 -2.3 Flagellar hook-associated protein FlgL compare
GFF121 -0.9 -2.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF4337 -0.9 -1.7 FIG001943: hypothetical protein YajQ compare
GFF3712 -0.8 -2.3 Cyclic AMP receptor protein compare
GFF2906 -0.8 -2.3 Protein yifE compare
GFF1934 -0.8 -2.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF2907 -0.8 -3.7 HTH-type transcriptional regulator hdfR compare
GFF4772 -0.8 -1.1 hypothetical protein compare
GFF360 -0.8 -1.2 hypothetical protein compare
GFF1219 -0.8 -2.4 FIG01048676: hypothetical protein compare
GFF1768 -0.8 -0.9 hypothetical protein compare
GFF2952 -0.8 -2.4 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare
GFF175 -0.8 -3.3 DedA family inner membrane protein YabI compare
GFF3706 -0.8 -1.0 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
GFF230 -0.8 -4.3 Adenylate cyclase (EC 4.6.1.1) compare
GFF1985 -0.7 -1.9 tRNA-Ala-GGC compare
GFF3183 -0.7 -1.1 FIG01046167: hypothetical protein compare
GFF2047 -0.7 -4.0 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF2943 -0.7 -1.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
GFF1884 -0.7 -1.4 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF4182 -0.7 -2.9 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF2838 -0.7 -1.5 Cold shock protein CspC compare
GFF1256 -0.7 -1.5 Chromosome (plasmid) partitioning protein ParA compare
GFF87 -0.7 -1.5 C4-type zinc finger protein, DksA/TraR family compare
GFF3667 -0.7 -1.1 Cytidylate kinase (EC 2.7.4.25) compare
GFF633 -0.7 -2.6 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF4353 -0.7 -2.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF705 -0.7 -2.4 Glutamate transport membrane-spanning protein compare
GFF368 -0.7 -1.6 Transcriptional regulator SlmA, TetR family compare
GFF2748 -0.7 -1.5 Putative membrane protein compare
GFF2946 -0.7 -2.5 RNA polymerase sigma-54 factor RpoN compare
GFF2154 -0.7 -2.0 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF267 -0.7 -3.2 Transcriptional activator RfaH compare
GFF218 -0.7 -1.9 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF2733 -0.7 -1.7 Membrane protein YciC, linked to IspA compare
GFF1343 -0.7 -0.8 Attachment invasion locus protein precursor compare
GFF713 -0.7 -0.6 FIG01047037: hypothetical protein compare
GFF3229 -0.6 -1.6 Secreted effector protein compare
GFF873 -0.6 -0.9 hypothetical protein compare
GFF3166 -0.6 -2.2 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF4654 -0.6 -2.8 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF4436 -0.6 -2.4 FIG074102: hypothetical protein compare
GFF3370 -0.6 -1.6 COG1399 protein, clustered with ribosomal protein L32p compare
GFF4683 -0.6 -1.1 Phage minor tail protein compare
GFF2028 -0.6 -1.2 Type III secretion and flagellar regulator RtsA compare
GFF3709 -0.6 -1.5 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF645 -0.6 -0.8 Membrane protein associated with oxaloacetate decarboxylase compare
GFF1338 -0.6 -2.3 Putative outer membrane protein compare
GFF1014 -0.6 -0.9 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare
GFF2991 -0.6 -1.3 Tyrosine recombinase XerD compare
GFF2966 -0.6 -1.5 Transcriptional regulator NanR compare
GFF2858 -0.6 -1.2 G-nucleotide exchange factor SopE compare
GFF3826 -0.6 -1.4 FIG00510335: hypothetical protein compare
GFF1499 -0.6 -2.3 Ribosome-binding factor A compare
GFF691 -0.6 -2.5 ABC transport system, permease component YbhR compare
GFF1435 -0.6 -1.0 Agglutination protein compare
GFF3058 -0.6 -2.3 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
GFF2921 -0.6 -1.4 FIG004454: RNA binding protein compare
GFF3648 -0.6 -1.1 tRNA-Arg-TCT compare
GFF1610 -0.6 -1.0 hypothetical protein compare
GFF2031 -0.6 -0.9 FIG01046611: hypothetical protein compare
GFF3603 -0.6 -1.3 Secretion system apparatus protein SsaM compare
GFF4417 -0.6 -2.2 Methionine ABC transporter ATP-binding protein compare
GFF2639 -0.6 -1.3 Heat shock protein hslJ compare
GFF3439 -0.6 -1.4 hypothetical protein compare
GFF3023 -0.6 -1.9 Predicted regulator of STY3230 transporter operon compare
GFF734 -0.6 -1.0 putative cytoplasmic protein compare
GFF4635 -0.6 -1.4 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF2630 -0.6 -2.4 Cytochrome b(561) compare
GFF356 -0.6 -2.2 'tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34)' transl_table=11 compare
GFF1584 -0.6 -1.4 Ribonucleotide reduction protein NrdI compare
GFF1259 -0.6 -2.4 Error-prone repair protein UmuD compare
GFF466 -0.6 -1.5 Chaperone protein lpfB precursor compare
GFF1880 -0.6 -3.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF1887 -0.6 -2.4 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF1502 -0.6 -3.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF4655 -0.6 -1.9 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1237 -0.6 -1.0 FIG01046247: hypothetical protein compare
GFF1750 -0.6 -1.4 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF3533 -0.6 -1.4 FIG00638687: hypothetical protein compare
GFF1239 -0.6 -0.9 Gifsy-2 prophage lysozyme( EC:3.2.1.17 ) compare
GFF2431 -0.5 -1.7 Chaperone protein HscA compare
GFF2528 -0.5 -1.8 Hexuronate utilization operon transcriptional repressor ExuR compare
GFF3548 -0.5 -2.4 3-dehydroquinate dehydratase I (EC 4.2.1.10) compare
GFF4004 -0.5 -1.5 DsrB protein compare
GFF1882 -0.5 -1.8 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF3599 -0.5 -1.4 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
GFF1334 -0.5 -0.7 Uncharacterized protein YohL compare
GFF443 -0.5 -0.9 FIG01045230: hypothetical protein compare
GFF4653 -0.5 -1.6 TolA protein compare
GFF20 -0.5 -2.7 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF3086 -0.5 -1.0 hypothetical protein compare
GFF4652 -0.5 -1.2 Tol biopolymer transport system, TolR protein compare
GFF1681 -0.5 -1.2 Ferritin-like protein 2 compare
GFF1225 -0.5 -2.5 putative cytoplasmic protein compare
GFF4354 -0.5 -1.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF1573 -0.5 -1.8 Rhodanese-related sulfurtransferases compare
GFF880 -0.5 -3.2 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF3963 -0.5 -1.6 Additional substrate-specific component CbiN of cobalt ECF transporter compare
GFF1187 -0.5 -1.2 VapB protein (antitoxin to VapC) compare
GFF1781 -0.5 -1.8 Putative binding-protein-dependent transport system compare
GFF1505 -0.5 -2.9 Tryptophan-specific transport protein compare
GFF1863 -0.5 -0.7 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF1600 -0.5 -1.5 HAD-superfamily hydrolase, subfamily IA compare
GFF3771 -0.5 -1.9 Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69) compare
GFF4639 -0.5 -1.3 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF1612 -0.5 -1.2 FIG01046582: hypothetical protein compare
GFF1414 -0.5 -0.9 hypothetical protein compare
GFF547 -0.5 -1.9 probable acetyltransferase YPO3809 compare
GFF103 -0.5 -2.0 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
GFF1270 -0.5 -1.4 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF3574 -0.5 -2.2 Tetrathionate reductase subunit B compare
GFF1891 -0.5 -1.1 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF3149 -0.5 -3.2 Type I secretion outer membrane protein, TolC precursor compare
GFF787 -0.5 -1.4 FIG00642546: hypothetical protein compare
GFF2490 -0.5 -1.7 Starvation sensing protein RspB compare
GFF626 -0.5 -0.6 Type IV pilus biogenesis protein PilO compare
GFF2771 -0.5 -1.6 FIG002708: Protein SirB1 compare
GFF2832 -0.5 -1.1 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare
GFF2669 -0.5 -1.6 Putative outer membrane lipoprotein compare
GFF4615 -0.5 -0.7 FIG137478: Hypothetical protein YbgI compare
GFF635 -0.5 -1.5 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF3495 -0.5 -2.3 Succinylarginine dihydrolase (EC 3.5.3.23) compare
GFF125 -0.5 -1.1 hypothetical protein compare
GFF3962 -0.5 -0.8 Substrate-specific component CbiM of cobalt ECF transporter compare
GFF3632 -0.5 -1.2 Transcriptional regulator SlyA compare
GFF3951 -0.5 -1.8 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF2415 -0.5 -1.8 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF201 -0.5 -0.8 Ferredoxin-like protein FixX compare
GFF3816 -0.5 -1.6 Osmoprotectant ABC transporter ATP-binding subunit YehX compare
GFF3794 -0.5 -2.3 SanA protein compare
GFF1947 -0.5 -1.5 Putative transporting ATPase compare
GFF4916 -0.5 -0.8 FIG00639119: hypothetical protein compare
GFF3463 -0.5 -0.8 FIG00638667: hypothetical protein compare
GFF189 -0.5 -2.1 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF2148 -0.5 -1.3 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF246 -0.5 -1.5 putative protein PaaI, possibly involved in aromatic compounds catabolism compare
GFF3881 -0.5 -1.8 Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ compare
GFF1385 -0.5 -0.7 hypothetical protein compare
GFF3258 -0.4 -1.9 LSU m5C1962 methyltransferase RlmI compare
GFF1808 -0.4 -1.2 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF747 -0.4 -2.1 Multidrug translocase MdfA compare
GFF4596 -0.4 -1.4 Ferric uptake regulation protein FUR compare
GFF612 -0.4 -1.7 Transcription elongation factor GreB compare
GFF3528 -0.4 -1.5 Integration host factor alpha subunit compare
GFF381 -0.4 -1.4 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF2436 -0.4 -1.5 Iron-sulfur cluster regulator IscR compare
GFF4323 -0.4 -1.7 FIG00553873: hypothetical protein compare
GFF2620 -0.4 -0.7 FIG01045674: hypothetical protein compare
GFF3062 -0.4 -1.7 FIG004016: Uncharacterized protein YggN compare
GFF2513 -0.4 -1.8 FIG00637950: hypothetical protein compare
GFF1015 -0.4 -1.9 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF858 -0.4 -3.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF752 -0.4 -0.8 Inner membrane protein compare
GFF4338 -0.4 -2.8 Putative transport protein compare
GFF1558 -0.4 -1.3 Tricarboxylate transport transcriptional regulator TctD compare
GFF3044 -0.4 -2.6 hypothetical protein compare
GFF2395 -0.4 -0.7 Similar to C-terminal Zn-finger domain of DNA topoisomerase I compare
GFF4122 -0.4 -0.7 FIG01046577: hypothetical protein compare
GFF3700 -0.4 -1.5 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
GFF2784 -0.4 -1.3 GTP-binding and nucleic acid-binding protein YchF compare
GFF3990 -0.4 -0.8 hypothetical protein compare
GFF63 -0.4 -2.7 Vitamin B12 ABC transporter, B12-binding component BtuF compare
GFF4369 -0.4 -2.0 Acyl-CoA thioesterase II (EC 3.1.2.-) compare
GFF2640 -0.4 -0.6 probable lipoprotein YPO2331 compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage Ffm_phage across organisms