Experiment set3IT095 for Pseudomonas fluorescens GW456-L13

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PfGW456L13_362 -6.5 -4.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
PfGW456L13_1010 -6.3 -4.4 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
PfGW456L13_347 -6.3 -6.1 Nitrogen regulation protein NR(I) compare
PfGW456L13_358 -6.3 -4.3 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
PfGW456L13_1007 -6.2 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
PfGW456L13_1222 -6.1 -4.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
PfGW456L13_3948 -6.0 -4.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
PfGW456L13_361 -6.0 -10.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
PfGW456L13_2842 -5.9 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
PfGW456L13_149 -5.9 -5.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
PfGW456L13_1221 -5.9 -16.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
PfGW456L13_3934 -5.8 -9.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
PfGW456L13_2046 -5.7 -4.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
PfGW456L13_1540 -5.7 -8.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
PfGW456L13_1368 -5.7 -3.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_951 -5.6 -11.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
PfGW456L13_644 -5.6 -8.5 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_272 -5.5 -27.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_5001 -5.5 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PfGW456L13_1553 -5.5 -8.4 Carbonic anhydrase (EC 4.2.1.1) compare
PfGW456L13_3940 -5.3 -8.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
PfGW456L13_5000 -5.3 -16.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
PfGW456L13_172 -5.3 -9.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
PfGW456L13_4098 -5.2 -6.2 Response regulator NasT conserved
PfGW456L13_3947 -5.2 -5.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
PfGW456L13_565 -5.1 -5.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
PfGW456L13_913 -5.1 -5.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_4711 -5.1 -18.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
PfGW456L13_727 -5.0 -9.7 LysR family transcriptional regulator PA5437 compare
PfGW456L13_845 -5.0 -3.5 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_1472 -4.9 -6.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
PfGW456L13_1539 -4.9 -9.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
PfGW456L13_271 -4.9 -18.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
PfGW456L13_1233 -4.9 -3.4 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_1217 -4.9 -19.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
PfGW456L13_2230 -4.8 -9.8 Cys regulon transcriptional activator CysB compare
PfGW456L13_2843 -4.8 -8.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
PfGW456L13_3945 -4.7 -12.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
PfGW456L13_1524 -4.7 -4.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
PfGW456L13_1739 -4.7 -9.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
PfGW456L13_4009 -4.7 -14.1 Transaldolase (EC 2.2.1.2) compare
PfGW456L13_359 -4.7 -9.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PfGW456L13_728 -4.7 -15.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
PfGW456L13_892 -4.7 -13.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
PfGW456L13_1050 -4.6 -8.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
PfGW456L13_303 -4.6 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PfGW456L13_854 -4.5 -3.1 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_1538 -4.5 -10.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
PfGW456L13_2032 -4.4 -5.3 Cysteine synthase B (EC 2.5.1.47) compare
PfGW456L13_1749 -4.4 -4.3 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_1972 -4.3 -3.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_4101 -4.3 -18.2 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
PfGW456L13_1813 -4.3 -10.3 Pyruvate kinase (EC 2.7.1.40) compare
PfGW456L13_1901 -4.3 -9.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
PfGW456L13_1927 -4.3 -11.0 Gluconate permease compare
PfGW456L13_973 -4.1 -11.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
PfGW456L13_2176 -4.1 -7.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_2656 -3.9 -8.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
PfGW456L13_4125 -3.9 -2.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
PfGW456L13_729 -3.9 -11.3 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
PfGW456L13_1889 -3.8 -2.6 Phosphogluconate dehydratase (EC 4.2.1.12) compare
PfGW456L13_949 -3.8 -15.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
PfGW456L13_276 -3.7 -2.3 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_4671 -3.7 -14.4 Transcriptional regulator, Cro/CI family compare
PfGW456L13_566 -3.7 -8.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
PfGW456L13_1148 -3.7 -15.2 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
PfGW456L13_1147 -3.6 -12.2 Biotin synthase (EC 2.8.1.6) compare
PfGW456L13_275 -3.5 -2.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_2941 -3.4 -3.3 Glycerate kinase (EC 2.7.1.31) compare
PfGW456L13_2552 -3.4 -7.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_943 -3.4 -6.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
PfGW456L13_1006 -3.4 -5.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
PfGW456L13_2623 -3.4 -3.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_1984 -3.4 -4.0 Mg/Co/Ni transporter MgtE / CBS domain compare
PfGW456L13_5067 -3.4 -11.4 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_1615 -3.3 -2.4 Probable transmembrane protein compare
PfGW456L13_4165 -3.3 -5.4 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_4854 -3.3 -8.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
PfGW456L13_1220 -3.2 -5.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
PfGW456L13_5003 -3.2 -2.7 YrbA protein compare
PfGW456L13_3960 -3.2 -9.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
PfGW456L13_302 -3.2 -4.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
PfGW456L13_1151 -3.1 -8.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
PfGW456L13_150 -3.1 -2.3 hypothetical protein compare
PfGW456L13_1044 -3.0 -11.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
PfGW456L13_4103 -3.0 -12.9 Nitrate reductase (EC 1.7.99.4) (from data) conserved
PfGW456L13_1150 -3.0 -12.7 Biotin synthesis protein BioC compare
PfGW456L13_793 -3.0 -3.9 Acetylglutamate kinase (EC 2.7.2.8) compare
PfGW456L13_779 -2.9 -10.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
PfGW456L13_4231 -2.9 -2.8 hypothetical protein compare
PfGW456L13_4859 -2.9 -4.3 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_4947 -2.9 -8.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
PfGW456L13_1824 -2.8 -3.0 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_3795 -2.8 -9.7 sensor histidine kinase compare
PfGW456L13_838 -2.8 -11.0 Ammonium transporter compare
PfGW456L13_4778 -2.7 -17.4 Transcriptional activator MetR compare
PfGW456L13_726 -2.6 -7.0 Phosphogluconate repressor HexR, RpiR family compare
PfGW456L13_1690 -2.6 -4.2 Molybdenum cofactor biosynthesis protein MoaD compare
PfGW456L13_50 -2.6 -9.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_360 -2.5 -3.9 FIG00956267: hypothetical protein compare
PfGW456L13_1735 -2.4 -4.1 Glycerol uptake facilitator protein compare
PfGW456L13_2553 -2.4 -9.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PfGW456L13_5048 -2.3 -3.8 Dna binding response regulator PrrA (RegA) compare
PfGW456L13_1838 -2.3 -4.9 Sensory box histidine kinase compare
PfGW456L13_4088 -2.3 -3.2 Transcriptional regulator, GntR family compare
PfGW456L13_346 -2.2 -1.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
PfGW456L13_2237 -2.1 -3.1 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_5150 -2.1 -3.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_3253 -2.1 -11.9 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
PfGW456L13_4041 -2.1 -2.8 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) compare
PfGW456L13_59 -2.0 -6.6 Sensor histidine kinase/response regulator compare
PfGW456L13_3577 -2.0 -2.5 hypothetical protein compare
PfGW456L13_5005 -2.0 -4.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_1982 -2.0 -3.2 Carbon storage regulator compare
PfGW456L13_787 -1.9 -7.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
PfGW456L13_2851 -1.9 -3.8 Cobalt-precorrin-3b C17-methyltransferase compare
PfGW456L13_430 -1.8 -7.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
PfGW456L13_4948 -1.8 -7.7 Transcriptional regulator, AraC family compare
PfGW456L13_1973 -1.8 -4.6 Arginine N-succinyltransferase (EC 2.3.1.109) compare
PfGW456L13_3179 -1.8 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_1842 -1.7 -8.5 Outer membrane porin, OprD family compare
PfGW456L13_875 -1.7 -5.8 Exopolyphosphatase (EC 3.6.1.11) compare
PfGW456L13_1009 -1.7 -3.1 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
PfGW456L13_1219 -1.7 -2.2 hypothetical protein compare
PfGW456L13_1584 -1.7 -5.7 Molybdopterin biosynthesis protein MoeB compare
PfGW456L13_3398 -1.6 -2.4 Transcriptional regulator, TetR family compare
PfGW456L13_656 -1.6 -4.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_1689 -1.6 -4.5 Molybdenum cofactor biosynthesis protein MoaC compare
PfGW456L13_4992 -1.6 -11.0 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
PfGW456L13_4993 -1.6 -9.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
PfGW456L13_3894 -1.6 -2.4 Integration host factor alpha subunit compare
PfGW456L13_3442 -1.6 -2.4 hypothetical protein compare
PfGW456L13_4012 -1.6 -2.2 VacJ-like lipoprotein precursor compare
PfGW456L13_4170 -1.5 -5.8 Isochorismatase (EC 3.3.2.1) compare
PfGW456L13_5089 -1.5 -1.7 Transcription termination protein NusA compare
PfGW456L13_849 -1.5 -2.7 Regulator of nucleoside diphosphate kinase compare
PfGW456L13_2114 -1.5 -5.0 Molybdenum cofactor biosynthesis protein MoaA conserved
PfGW456L13_5029 -1.4 -7.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
PfGW456L13_1525 -1.4 -7.2 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
PfGW456L13_67 -1.4 -5.1 Cobalamin biosynthesis protein CobG compare
PfGW456L13_1021 -1.4 -4.1 Glutathione synthetase (EC 6.3.2.3) compare
PfGW456L13_4999 -1.4 -7.5 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
PfGW456L13_2272 -1.3 -6.5 Molybdopterin-guanine dinucleotide biosynthesis protein MobA conserved
PfGW456L13_4511 -1.3 -1.6 Rhodanese-like domain protein compare
PfGW456L13_1714 -1.3 -1.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
PfGW456L13_69 -1.3 -1.3 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
PfGW456L13_4238 -1.3 -3.2 Cobyric acid synthase (EC 6.3.5.10) compare
PfGW456L13_1997 -1.3 -3.7 Negative regulator of flagellin synthesis FlgM compare
PfGW456L13_1479 -1.3 -1.2 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
PfGW456L13_2103 -1.3 -5.4 Phosphate:acyl-ACP acyltransferase PlsX compare
PfGW456L13_756 -1.3 -4.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
PfGW456L13_5112 -1.3 -1.5 tmRNA-binding protein SmpB compare
PfGW456L13_2162 -1.2 -5.5 Cell division protein BolA compare
PfGW456L13_4882 -1.2 -2.8 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
PfGW456L13_2274 -1.2 -6.6 Molybdopterin biosynthesis protein MoeA conserved
PfGW456L13_4234 -1.2 -3.6 Cobalamin synthase compare
PfGW456L13_2857 -1.2 -1.9 ChlD component of cobalt chelatase involved in B12 biosynthesis compare
PfGW456L13_1691 -1.2 -2.5 Molybdenum cofactor biosynthesis protein MoaE compare
PfGW456L13_3291 -1.2 -1.9 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
PfGW456L13_66 -1.2 -0.9 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
PfGW456L13_1391 -1.2 -1.1 Transcriptional regulator, AsnC family compare
PfGW456L13_4883 -1.2 -3.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
PfGW456L13_2651 -1.2 -4.0 Cell division protein FtsK compare
PfGW456L13_2551 -1.2 -2.8 Cell division trigger factor (EC 5.2.1.8) compare
PfGW456L13_4361 -1.1 -2.0 Flagellin protein FlaG compare
PfGW456L13_2273 -1.1 -2.4 Molybdenum cofactor biosynthesis protein MoaB compare
PfGW456L13_4207 -1.1 -4.6 Periplasmic protease compare
PfGW456L13_2850 -1.1 -6.7 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
PfGW456L13_2597 -1.1 -3.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
PfGW456L13_1628 -1.1 -4.6 ATPase, AFG1 family compare
PfGW456L13_5006 -1.1 -1.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_953 -1.1 -7.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
PfGW456L13_4507 -1.1 -1.9 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) compare
PfGW456L13_1322 -1.1 -1.2 Permeases of the major facilitator superfamily compare
PfGW456L13_4237 -1.1 -3.5 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
PfGW456L13_1890 -1.1 -4.3 Glucokinase (EC 2.7.1.2) compare
PfGW456L13_5008 -1.1 -1.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_4976 -1.1 -3.5 putative membrane protein compare
PfGW456L13_1845 -1.1 -2.1 Cold shock protein CspC compare
PfGW456L13_2981 -1.1 -1.3 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
PfGW456L13_4668 -1.1 -4.1 RecA protein compare
PfGW456L13_1011 -1.0 -1.7 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
PfGW456L13_4898 -1.0 -1.3 Inner membrane protein compare
PfGW456L13_2592 -1.0 -2.1 hypothetical protein compare
PfGW456L13_777 -1.0 -6.3 Nucleoside-diphosphate-sugar epimerases compare
PfGW456L13_3311 -1.0 -1.8 hypothetical protein compare
PfGW456L13_5082 -1.0 -3.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
PfGW456L13_2855 -1.0 -7.5 CobN component of cobalt chelatase involved in B12 biosynthesis compare
PfGW456L13_355 -1.0 -2.9 Carboxyl-terminal protease (EC 3.4.21.102) compare
PfGW456L13_1363 -1.0 -2.7 Rare lipoprotein A precursor compare
PfGW456L13_994 -1.0 -1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
PfGW456L13_4038 -1.0 -2.2 DNA topoisomerase I (EC 5.99.1.2) compare
PfGW456L13_3537 -1.0 -3.3 Transcriptional regulator, ArsR family compare
PfGW456L13_2670 -1.0 -2.7 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
PfGW456L13_753 -1.0 -6.4 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
PfGW456L13_4015 -1.0 -2.5 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
PfGW456L13_5060 -1.0 -2.9 Peptide chain release factor 3 compare
PfGW456L13_4842 -1.0 -2.2 Translation elongation factor LepA compare
PfGW456L13_2847 -0.9 -6.4 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
PfGW456L13_2436 -0.9 -3.3 Phenylacetic acid degradation operon negative regulatory protein PaaX compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas fluorescens GW456-L13

For nitrogen source Sodium nitrate across organisms