Experiment set3IT095 for Pseudomonas putida KT2440

Compare to:

LB with Cholinium glutamate 10 vol%

200 most important genes:

  gene name fitness t score description  
PP_4723 -3.5 -10.8 Carbamoyl-phosphate synthase large chain compare
PP_1428 -2.8 -3.3 Sigma factor AlgU negative regulatory protein compare
PP_4999 -2.8 -1.9 dihydroorotase-like protein compare
PP_4993 -2.8 -4.9 Glutathione synthetase compare
PP_4724 -2.3 -6.0 Carbamoyl-phosphate synthase small chain compare
PP_0856 -2.2 -4.3 conserved lipoprotein of unknown function compare
PP_0888 -2.2 -2.9 Photosynthetic apparatus regulatory protein RegA compare
PP_0719 -2.1 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3447 -1.9 -2.1 conserved membrane protein of unknown function compare
PP_1629 -1.9 -5.5 Protein RecA compare
PP_1468 -1.8 -3.7 Tyrosine recombinase XerD compare
PP_1186 -1.8 -2.4 two component system DNA-binding transcriptional dual regulator compare
PP_4964 -1.8 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0872 -1.8 -6.1 Peptide chain release factor 3 compare
PP_1994 -1.7 -2.5 tRNA pseudouridine (38-40)synthase compare
PP_1215 -1.7 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_5309 -1.7 -3.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2442 -1.7 -3.1 conserved protein of unknown function, DUF480 family compare
PP_4561 -1.6 -1.6 stress response protein compare
PP_0164 -1.6 -6.2 conserved protein of unknown function compare
PP_2720 -1.6 -1.9 conserved protein of unknown function compare
PP_0691 -1.6 -2.9 Glutamate 5-kinase compare
PP_4880 -1.5 -7.7 exoribonuclease R compare
PP_5329 -1.5 -4.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5225 -1.5 -2.0 frataxin compare
PP_5230 -1.5 -4.2 Tyrosine recombinase XerC compare
PP_0801 -1.4 -2.0 conserved exported protein of unknown function compare
PP_1783 -1.4 -1.3 dTDP-glucose pyrophosphorylase compare
PP_4895 -1.4 -2.9 tRNA dimethylallyltransferase compare
PP_2847 -1.4 -1.8 Urease accessory protein UreJ compare
PP_3649 -1.3 -2.8 Transcriptional regulator, GntR family compare
PP_4130 -1.3 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0007 -1.3 -1.7 conserved hypothetical protein compare
PP_1654 -1.3 -3.2 cysteine synthase B compare
PP_4271 -1.3 -1.5 conserved protein of unknown function compare
PP_5582 -1.3 -1.5 conserved protein of unknown function compare
PP_5310 -1.2 -4.4 junction-specific ATP-dependent DNA helicase compare
PP_2378 -1.2 -1.9 Fe/S biogenesis protein NfuA compare
PP_0165 -1.2 -8.8 GGDEF domain protein compare
PP_2336 -1.2 -2.9 aconitate hydratase 1 compare
PP_4342 -1.2 -3.1 flagellar synthesis regulator, putative ATPase compare
PP_1734 -1.2 -2.5 Probable septum site-determining protein MinC compare
PP_5706 -1.1 -2.1 Sec translocation complex - SecG subunit compare
PP_4930 -1.1 -3.8 putative small multidrug resistance protein compare
PP_0852 -1.1 -3.0 Transcriptional regulator, Cro/CI family compare
PP_4989 -1.1 -2.9 Protein PilJ compare
PP_0168 -1.1 -9.3 putative surface adhesion protein compare
PP_2000 -1.1 -2.3 amidophosphoribosyl transferase compare
PP_1217 -1.1 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2976 -1.1 -2.0 putative transposase compare
PP_4120 -1.1 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_0339 -1.1 -3.2 Pyruvate dehydrogenase E1 component compare
PP_0167 -1.0 -8.1 Toxin secretion ATP-binding protein compare
PP_5227 -1.0 -5.4 diaminopimelate decarboxylase compare
PP_4591 -1.0 -2.7 Ribonuclease D compare
PP_5095 -1.0 -1.3 pyrroline-5-carboxylate reductase compare
PP_3286 -1.0 -4.2 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2137 -1.0 -2.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_0166 -1.0 -7.0 HlyD family secretion protein compare
PP_0184 -1.0 -3.9 Argininosuccinate lyase compare
PP_2402 -1.0 -1.7 putative Sensor histidine kinase compare
PP_4124 -0.9 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_4004 -0.9 -2.6 DNA translocase FtsK compare
PP_4121 -0.9 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_0250 -0.9 -2.5 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1733 -0.9 -1.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_1344 -0.9 -1.7 conserved protein of unknown function compare
PP_0001 -0.9 -1.0 probable chromosome-partitioning protein compare
PP_5580 -0.9 -2.2 protein of unknown function compare
PP_0003 -0.9 -2.0 16S RNA methyltransferase compare
PP_4519 -0.8 -6.4 Agglutination protein compare
PP_3821 -0.8 -4.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0235 -0.8 -2.7 Peroxidase compare
PP_4098 -0.8 -1.7 UvrABC system protein C compare
PP_1527 -0.8 -4.3 tRNA threonylcarbamoyladenosine dehydratase (t(6)A37 dehydratase) compare
PP_0672 -0.8 -5.9 Sensory box protein compare
PP_1489 -0.8 -1.8 CheW domain protein compare
PP_4131 -0.8 -2.8 NADH-quinone oxidoreductase subunit N compare
PP_0313 -0.8 -1.2 putative electron transfer flavoprotein beta subunit compare
PP_1672 -0.8 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0855 -0.8 -1.6 conserved protein of unknown function compare
PP_4693 -0.8 -2.7 RNA polymerase-binding transcription factor DksA compare
PP_0945 -0.8 -2.6 conserved protein of unknown function compare
PP_2144 -0.8 -2.4 Transcriptional regulator, TetR family compare
PP_4253 -0.8 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_4199 -0.8 -1.0 putative Lipoprotein compare
PP_2903 -0.8 -1.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2360 -0.8 -2.6 putative type 1 pili subunit CsuA/B protein compare
PP_4555 -0.8 -2.0 conserved protein of unknown function compare
PP_2475 -0.8 -2.7 Transcriptional regulator, TetR family compare
PP_5328 -0.8 -1.8 putative phosphate transport system permease protein compare
PP_4204 -0.8 -2.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5045 -0.8 -2.6 tRNA sulfurtransferase compare
PP_4265 -0.8 -2.3 DNA-binding transcriptional dual regulator compare
PP_5SB -0.8 -2.2 5S ribosomal RNA compare
PP_5240 -0.7 -2.0 Response regulator compare
PP_5001 -0.7 -2.1 protease HslVU, ATPase component compare
PP_1763 -0.7 -2.0 putative oxidoreductase compare
PP_4722 -0.7 -2.2 Transcription elongation factor GreA compare
PP_1216 -0.7 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5327 -0.7 -2.8 putative phosphate ABC transporter, permease subunit compare
PP_4937 -0.7 -1.8 toluene tolerance protein compare
PP_4981 -0.7 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_2820 -0.7 -1.9 HTH-type transcriptional regulator nfxB compare
PP_4660 -0.7 -1.8 Transcriptional regulator, LysR family compare
PP_5473 -0.7 -2.0 putative transcriptional regulator, LuxR family compare
PP_0125 -0.7 -1.7 putative cytochrome c-type protein compare
PP_1099 -0.7 -1.7 Cold shock protein CapB compare
PP_4799 -0.7 -2.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1757 -0.7 -2.6 DNA-binding transcriptional dual regulator compare
PP_0848 -0.7 -1.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3014 -0.7 -1.9 conserved exported protein of unknown function compare
PP_5519 -0.7 -2.1 conserved protein of unknown function of phage origin compare
PP_1490 -0.7 -4.1 Probable biofilm formation methyltransferase WspC compare
PP_2203 -0.7 -1.1 conserved protein of unknown function compare
PP_5393 -0.7 -0.9 putative metal-binding chaperone compare
PP_t10 -0.7 -1.6 tRNA-Pro compare
PP_5063 -0.7 -2.2 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_5114 -0.7 -1.4 putative adenine methyltransferase compare
PP_2379 -0.7 -2.6 putative cytochrome oxidase biogenesis protein compare
PP_3041 -0.7 -3.0 conserved protein of unknown function compare
PP_0377 -0.7 -1.7 coenzyme PQQ synthesis protein D compare
PP_1207 -0.7 -2.6 conserved protein of unknown function compare
PP_3048 -0.7 -1.5 conserved protein of unknown function compare
PP_1736 -0.7 -2.1 conserved protein of unknown function compare
PP_0841 -0.7 -2.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_0905 -0.6 -1.4 conserved exported protein of unknown function compare
PP_1142 -0.6 -1.1 conserved protein of unknown function compare
PP_4994 -0.6 -1.9 conserved protein of unknown function compare
PP_5217 -0.6 -5.3 Polyphosphate kinase compare
PP_5198 -0.6 -1.7 conserved protein of unknown function compare
PP_0123 -0.6 -3.3 DNA polymerase I, 5 compare
PP_2768 -0.6 -2.5 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3730 -0.6 -0.9 Transcriptional regulatory protein AruR compare
PP_0760 -0.6 -1.9 conserved membrane protein of unknown function compare
PP_0120 -0.6 -3.5 putative zinc ABC transporter compare
PP_5027 -0.6 -1.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4943 -0.6 -1.3 putative Glycosyl transferase compare
PP_3505 -0.6 -1.0 conserved protein of unknown function compare
PP_4373 -0.6 -4.3 Transcriptional regulator FleQ compare
PP_0973 -0.6 -3.1 Nucleoid-associated protein PP_0973 compare
PP_5054 -0.6 -1.2 glutaredoxin 3 compare
PP_1719 -0.6 -3.8 Tail-specific protease prc compare
PP_2387 -0.6 -1.1 conserved protein of unknown function compare
PP_2835 -0.6 -1.6 putative oxidoreductase compare
PP_4261 -0.6 -2.7 cation-transporting P-type ATPase compare
PP_2745 -0.6 -1.6 Universal stress protein family compare
PP_0273 -0.6 -1.6 conserved protein of unknown function compare
PP_5317 -0.6 -1.5 Probable chorismate pyruvate-lyase compare
PP_4782 -0.6 -2.3 Phosphomethylpyrimidine kinase compare
PP_2281 -0.6 -1.7 putative Capsid assembly protein compare
PP_3522 -0.6 -1.2 conserved protein of unknown function compare
PP_1779 -0.6 -2.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4789 -0.6 -1.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4836 -0.6 -1.5 conserved exported protein of unknown function compare
PP_2764 -0.6 -1.9 FMN reductase (NADPH) compare
PP_1979 -0.6 -1.1 putative Hydrolase compare
PP_1366 -0.6 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_1787 -0.6 -2.1 conserved protein of unknown function compare
PP_3110 -0.6 -1.4 protein of unknown function compare
PP_1744 -0.6 -1.9 conserved exported protein of unknown function compare
PP_1088 -0.6 -2.8 Argininosuccinate synthase compare
PP_0504 -0.6 -2.9 Outer membrane protein OprG compare
PP_1038 -0.6 -1.5 conserved protein of unknown function compare
PP_1083 -0.6 -2.4 (2Fe-2S)-binding protein compare
PP_5681 -0.6 -2.0 conserved protein of unknown function compare
PP_5053 -0.6 -2.4 Protein-export protein SecB compare
PP_5058 -0.6 -2.4 Carboxy-terminal-processing protease compare
PP_3408 -0.6 -2.1 cobalt transporter subunit A compare
PP_0040 -0.6 -1.3 hypothetical protein compare
PP_0319 -0.6 -1.4 conserved protein of unknown function compare
PP_1801 -0.6 -3.7 Glycosyl transferase WbpY compare
PP_5429 -0.6 -2.3 protein of unknown function compare
PP_3713 -0.6 -2.6 Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) compare
PP_3507 -0.6 -3.7 Aerobic cobaltochelatase subunit CobN compare
PP_4848 -0.5 -1.5 Curved DNA-binding protein compare
PP_0567 -0.5 -3.8 Biosynthetic arginine decarboxylase compare
PP_5289 -0.5 -1.7 Acetylglutamate kinase compare
PP_4793 -0.5 -1.3 conserved protein of unknown function compare
PP_2302 -0.5 -2.2 DNA-binding, ATP-dependent protease compare
PP_3766 -0.5 -1.6 Lactoylglutathione lyase compare
PP_4259 -0.5 -3.2 Iron-sulfur cluster-binding protein compare
PP_0566 -0.5 -0.9 translation-related factor compare
PP_0757 -0.5 -2.4 conserved protein of unknown function compare
PP_2668 -0.5 -1.5 ABC efflux transporter, ATP-binding protein compare
PP_5295 -0.5 -1.0 conserved protein of unknown function compare
PP_2951 -0.5 -2.6 Transcriptional regulator, TetR family compare
PP_2101 -0.5 -2.1 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_1575 -0.5 -1.2 conserved protein of unknown function compare
PP_2371 -0.5 -1.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4263 -0.5 -1.9 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_3508 -0.5 -1.9 Protein CobW compare
PP_1643 -0.5 -1.8 conserved membrane protein of unknown function compare
PP_3597 -0.5 -1.9 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_1318 -0.5 -3.0 Cytochrome b compare
PP_5248 -0.5 -0.5 putative hydrolase compare
PP_3487 -0.5 -1.5 conserved exported protein of unknown function compare
PP_0236 -0.5 -1.7 NAD(P)H-dependent FMN reductase subunit compare
PP_1435 -0.5 -2.4 DNA repair protein RecO compare
PP_3808 -0.5 -1.2 Antibiotic synthesis protein MbtH compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Cholinium glutamate across organisms