Experiment set3IT093 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6F2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF388 -4.9 -12.5 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF1832 -2.2 -11.5 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF381 -2.1 -6.8 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF3230 -1.8 -1.2 Transposase compare
GFF1830 -1.8 -10.1 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF1472 -1.8 -2.9 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF236 -1.7 -1.5 FIG00545237: hypothetical protein compare
GFF2409 -1.6 -5.4 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF2148 -1.5 -3.0 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF2808 -1.4 -6.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF4353 -1.4 -4.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF2537 -1.4 -2.0 hypothetical protein compare
GFF1221 -1.4 -2.2 hypothetical protein compare
GFF1884 -1.4 -2.1 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF2145 -1.4 -1.3 probable ribonuclease inhibitor YPO3690 compare
GFF1768 -1.4 -1.4 hypothetical protein compare
GFF188 -1.3 -5.3 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF3528 -1.3 -2.4 Integration host factor alpha subunit compare
GFF652 -1.3 -2.2 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF2946 -1.3 -3.9 RNA polymerase sigma-54 factor RpoN compare
GFF2213 -1.3 -6.1 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF1914 -1.3 -1.9 Cell division inhibitor compare
GFF121 -1.3 -2.4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF4350 -1.3 -0.9 hypothetical protein compare
GFF3041 -1.2 -1.3 hypothetical protein compare
GFF55 -1.2 -6.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF2690 -1.2 -1.4 Peptide transport system permease protein SapC compare
GFF2758 -1.2 -1.6 FIG01045187: hypothetical protein compare
GFF2845 -1.1 -2.5 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF2832 -1.1 -2.1 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare
GFF2907 -1.1 -6.8 HTH-type transcriptional regulator hdfR compare
GFF1334 -1.1 -1.2 Uncharacterized protein YohL compare
GFF2564 -1.1 -2.6 Gfa-like protein compare
GFF3150 -1.0 -6.7 UPF0441 protein ygiB compare
GFF3603 -1.0 -1.1 Secretion system apparatus protein SsaM compare
GFF825 -1.0 -1.5 RNA-binding protein Hfq compare
GFF1503 -1.0 -3.6 Lipoprotein nlpI precursor compare
GFF4683 -1.0 -2.2 Phage minor tail protein compare
GFF4417 -1.0 -2.9 Methionine ABC transporter ATP-binding protein compare
GFF2470 -1.0 -1.3 4Fe-4S ferredoxin, iron-sulfur binding compare
GFF1502 -1.0 -6.4 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF4354 -1.0 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2906 -1.0 -2.9 Protein yifE compare
GFF3151 -1.0 -5.6 Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1 compare
GFF518 -0.9 -1.4 rRNA small subunit methyltransferase J compare
GFF2389 -0.9 -1.8 Trk system potassium uptake protein TrkA compare
GFF827 -0.9 -4.0 HflK protein compare
GFF1114 -0.9 -2.1 FIG01200701: possible membrane protein compare
GFF828 -0.9 -3.5 HflC protein compare
GFF1000 -0.9 -2.1 Type I restriction-modification system, specificity subunit S (EC 3.1.21.3) compare
GFF387 -0.9 -1.1 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF4158 -0.9 -0.7 tmRNA-binding protein SmpB compare
GFF4598 -0.9 -1.8 Uncharacterized protein ybfE compare
GFF4596 -0.9 -1.9 Ferric uptake regulation protein FUR compare
GFF352 -0.9 -1.3 FIG01048298: hypothetical protein compare
GFF540 -0.8 -4.3 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
GFF2698 -0.8 -4.5 Exoribonuclease II (EC 3.1.13.1) compare
GFF1219 -0.8 -2.9 FIG01048676: hypothetical protein compare
GFF3845 -0.8 -1.8 putative cytoplasmic protein compare
GFF2028 -0.8 -1.7 Type III secretion and flagellar regulator RtsA compare
GFF2539 -0.8 -1.6 putative phage-related secreted protein compare
GFF3659 -0.8 -1.3 FIG01045244: hypothetical protein compare
GFF2863 -0.8 -0.8 FIG074102: hypothetical protein compare
GFF2733 -0.8 -2.1 Membrane protein YciC, linked to IspA compare
GFF4305 -0.8 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
GFF4087 -0.8 -1.2 Mobile element protein compare
GFF3229 -0.8 -1.7 Secreted effector protein compare
GFF826 -0.8 -3.0 GTP-binding protein HflX compare
GFF3484 -0.8 -1.5 FIG002003: Protein YdjA compare
GFF2313 -0.8 -5.2 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF3632 -0.8 -2.1 Transcriptional regulator SlyA compare
GFF4322 -0.8 -3.8 Phosphatidylglycerophosphatase A (EC 3.1.3.27) compare
GFF522 -0.7 -4.1 Low-affinity inorganic phosphate transporter compare
GFF3502 -0.7 -0.8 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF1559 -0.7 -1.8 hypothetical protein compare
GFF1356 -0.7 -1.6 Acetate operon repressor compare
GFF1641 -0.7 -1.1 hypothetical protein compare
GFF321 -0.7 -3.5 Putative secreted protein compare
GFF2573 -0.7 -2.0 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF4865 -0.7 -3.6 Glycine cleavage system transcriptional activator GcvA compare
GFF2948 -0.7 -1.6 PTS system nitrogen-specific IIA component, PtsN compare
GFF1781 -0.7 -1.6 Putative binding-protein-dependent transport system compare
GFF1777 -0.7 -2.2 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-) compare
GFF4759 -0.7 -1.5 Surface presentation of antigens protein SpaM compare
GFF2664 -0.7 -1.4 FIG01200701: possible membrane protein compare
GFF1806 -0.7 -1.8 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF368 -0.7 -1.3 Transcriptional regulator SlmA, TetR family compare
GFF122 -0.7 -3.5 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2954 -0.7 -3.6 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF4010 -0.7 -0.8 Flagellar motor switch protein FliN compare
GFF517 -0.7 -5.0 Oligopeptidase A (EC 3.4.24.70) compare
GFF160 -0.7 -2.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF4653 -0.7 -1.6 TolA protein compare
GFF629 -0.7 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
GFF2314 -0.7 -2.0 ATP-dependent protease HslV (EC 3.4.25.-) compare
GFF1950 -0.7 -1.4 Chorismate synthase (EC 4.2.3.5) compare
GFF4792 -0.6 -4.1 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11) compare
GFF4611 -0.6 -2.1 FIG01200701: possible membrane protein compare
GFF4095 -0.6 -0.6 LysR-family transcriptional regulator SinR compare
GFF597 -0.6 -1.8 DNA-damage-inducible protein J compare
GFF4387 -0.6 -1.7 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF3913 -0.6 -2.5 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
GFF192 -0.6 -2.6 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF1900 -0.6 -3.3 Acetate kinase (EC 2.7.2.1) compare
GFF4654 -0.6 -2.3 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF4314 -0.6 -0.6 hypothetical protein compare
GFF4639 -0.6 -1.4 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF4575 -0.6 -2.0 Magnesium and cobalt efflux protein CorC compare
GFF2031 -0.6 -0.9 FIG01046611: hypothetical protein compare
GFF4358 -0.6 -0.8 FIG01200701: possible membrane protein compare
GFF1233 -0.6 -2.4 Transposase compare
GFF2889 -0.6 -4.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
GFF1076 -0.6 -1.8 Aerobic respiration control protein arcA compare
GFF3874 -0.6 -2.2 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF603 -0.6 -1.3 NfuA Fe-S protein maturation compare
GFF4445 -0.6 -1.9 Putative membrane-bound metal-dependent hydrolases compare
GFF1434 -0.6 -2.3 FIG00732228: membrane protein compare
GFF4335 -0.6 -1.6 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
GFF539 -0.6 -1.3 Putative inner membrane protein compare
GFF2607 -0.6 -1.9 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF3733 -0.6 -1.6 Phage tail fiber protein compare
GFF4537 -0.6 -1.1 CrcB protein compare
GFF2427 -0.6 -1.4 Protein SseB compare
GFF3154 -0.6 -0.9 Zinc transporter ZupT compare
GFF1235 -0.6 -1.5 27.5 kDa virulence protein compare
GFF3881 -0.6 -2.1 Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ compare
GFF3577 -0.6 -0.9 FIG00637899: hypothetical protein compare
GFF4140 -0.6 -1.1 putative cytoplasmic protein compare
GFF2475 -0.6 -1.2 Ribonuclease III (EC 3.1.26.3) compare
GFF876 -0.6 -4.2 UPF0131 protein YtfP compare
GFF4500 -0.6 -1.6 Isochorismate synthase (EC 5.4.4.2) of siderophore biosynthesis compare
GFF1291 -0.6 -1.4 Phage minor tail protein #Phage minor tail protein T compare
GFF485 -0.6 -2.3 FIG005119: putative inner membrane protein compare
GFF4797 -0.6 -2.6 Putative cytochrome oxidase subunit compare
GFF2707 -0.6 -3.0 Phosphatidylglycerophosphatase B (EC 3.1.3.27) compare
GFF3511 -0.5 -1.0 Membrane-bound metal-dependent hydrolase YdjM, induced during SOS response compare
GFF1348 -0.5 -0.9 FIG01046723: hypothetical protein compare
GFF27 -0.5 -0.9 Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion compare
GFF3026 -0.5 -2.0 ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter compare
GFF3908 -0.5 -1.1 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF1554 -0.5 -2.2 Putative transcriptional regulator compare
GFF2630 -0.5 -1.9 Cytochrome b(561) compare
GFF4337 -0.5 -1.1 FIG001943: hypothetical protein YajQ compare
GFF1194 -0.5 -2.7 DNA replication protein compare
GFF103 -0.5 -2.3 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
GFF2648 -0.5 -2.8 tRNA(Cytosine32)-2-thiocytidine synthetase compare
GFF881 -0.5 -3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
GFF110 -0.5 -2.0 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF2756 -0.5 -2.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF716 -0.5 -2.3 L,D-transpeptidase YbiS compare
GFF3667 -0.5 -0.7 Cytidylate kinase (EC 2.7.4.25) compare
GFF3558 -0.5 -1.2 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF3246 -0.5 -1.9 ATP-dependent protease La (EC 3.4.21.53) Type II compare
GFF4844 -0.5 -1.8 FIG01046344: hypothetical protein compare
GFF3644 -0.5 -1.2 Electron transport complex protein RnfD compare
GFF2563 -0.5 -1.2 Outer membrane porin protein NmpC precursor compare
GFF1234 -0.5 -0.9 hypothetical protein compare
GFF1869 -0.5 -1.1 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate synthase (EC 4.2.99.20) compare
GFF3544 -0.5 -0.8 Electron transfer flavoprotein, beta subunit compare
GFF3599 -0.5 -1.4 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
GFF3576 -0.5 -1.6 Tetrathionate reductase two-component response regulator compare
GFF3015 -0.5 -1.3 Chromosome initiation inhibitor compare
GFF2606 -0.5 -2.1 PTS system, IIA component compare
GFF2196 -0.5 -2.0 Transaldolase (EC 2.2.1.2) compare
GFF2952 -0.5 -1.9 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare
GFF1441 -0.5 -2.4 Regulatory protein SoxS compare
GFF1451 -0.5 -1.3 Putative membrane protein, clustering with ActP compare
GFF2063 -0.5 -0.7 Inner membrane protein YfeZ compare
GFF2578 -0.5 -2.1 Probable tonB-dependent receptor yncD precursor compare
GFF4042 -0.5 -3.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
GFF3050 -0.5 -1.3 UPF0301 protein YqgE compare
GFF2154 -0.5 -1.2 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF1665 -0.5 -2.2 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
GFF4766 -0.5 -0.7 Invasion protein invH precursor compare
GFF2431 -0.5 -1.1 Chaperone protein HscA compare
GFF1307 -0.5 -0.9 Prepilin peptidase dependent protein A precursor compare
GFF2669 -0.5 -1.4 Putative outer membrane lipoprotein compare
GFF4615 -0.5 -0.7 FIG137478: Hypothetical protein YbgI compare
GFF190 -0.5 -2.1 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF1035 -0.5 -2.8 Peptide chain release factor 3 compare
GFF20 -0.5 -2.2 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF1885 -0.5 -2.8 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF4341 -0.5 -0.8 Probable secreted protein compare
GFF2634 -0.5 -1.2 Gfa-like protein compare
GFF3426 -0.5 -1.3 Virulence protein MsgA compare
GFF3347 -0.5 -1.6 Protein of unknown function YceH compare
GFF1426 -0.5 -1.5 Protein yjbR compare
GFF2596 -0.5 -2.6 Benzoate transport protein compare
GFF4118 -0.5 -0.9 tRNA-Thr-CGT compare
GFF4861 -0.5 -0.9 L-fucose mutarotase compare
GFF3826 -0.5 -1.0 FIG00510335: hypothetical protein compare
GFF1996 -0.5 -2.9 Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) compare
GFF3463 -0.5 -0.7 FIG00638667: hypothetical protein compare
GFF3305 -0.5 -1.9 Sialic acid utilization regulator, RpiR family compare
GFF1013 -0.5 -1.7 PTS system, mannose-specific IIB component (EC 2.7.1.69) compare
GFF2518 -0.5 -1.5 Putative dehydrogenase protein compare
GFF2433 -0.5 -2.1 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF394 -0.5 -1.8 L-threonine 3-dehydrogenase (EC 1.1.1.103) compare
GFF2536 -0.5 -1.0 RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein compare
GFF3063 -0.5 -1.2 FIG002060: uncharacterized protein YggL compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6F2_phage across organisms