Experiment set3IT093 for Agrobacterium fabrum C58

Compare to:

Orotic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1359 -2.7 -1.7 dnaK deletion suppressor protein compare
Atu2499 -2.4 -7.2 Isochorismatase compare
Atu2500 -2.4 -8.9 monooxygenase (pyrimidine utilization protein A) compare
Atu2496 -2.2 -7.7 nitroreducatase compare
Atu4530 -2.2 -5.6 TetR family transcriptional regulator compare
Atu2497 -2.1 -9.9 hydrolase compare
Atu0331 -2.1 -4.7 sigma-54 modulation protein compare
Atu4702 -2.0 -9.2 GntR family transcriptional regulator compare
Atu2498 -1.9 -7.2 hypothetical protein compare
Atu4616 -1.9 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu0846 -1.9 -5.0 transcriptional regulator, MarR family compare
Atu0354 -1.8 -2.9 ferric uptake regulator compare
Atu4685 -1.8 -8.9 LacI family transcriptional regulator compare
Atu1028 -1.8 -2.5 hypothetical protein compare
Atu0026 -1.8 -1.4 hypothetical protein compare
Atu3311 -1.7 -12.8 phosphomannose isomerase compare
Atu5173 -1.7 -1.6 dehydrogenase compare
Atu8054 -1.7 -0.6 hypothetical protein compare
Atu2379 -1.7 -7.6 phosphomannomutase compare
Atu2495 -1.7 -4.3 flavoprotein oxidoreductase compare
Atu0300 -1.6 -5.0 methyltransferase compare
Atu3353 -1.5 -8.6 mannose-1-phosphate guanylyltransferase compare
Atu3005 -1.5 -1.3 hypothetical protein compare
Atu2791 -1.5 -7.8 3-isopropylmalate dehydrogenase compare
Atu3755 -1.5 -5.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1470 -1.5 -1.4 Camphor resistance protein compare
Atu3294 -1.5 -7.4 GntR family transcriptional regulator compare
Atu5034 -1.5 -2.0 hypothetical protein compare
Atu0035 -1.4 -6.2 phosphoenolpyruvate carboxykinase compare
Atu3885 -1.4 -5.8 inositol monophosphatase compare
Atu2328 -1.4 -6.2 hypothetical protein compare
Atu0372 -1.3 -8.4 hypothetical protein compare
Atu5485 -1.3 -1.7 hypothetical protein compare
Atu3469 -1.3 -2.5 phosphoglyceromutase compare
Atu2036 -1.3 -8.7 acetolactate synthase III, large subunit compare
Atu3296 -1.3 -5.9 two component response regulator for C4-dicarboxylate transport compare
Atu3298 -1.3 -8.2 C4-dicarboxylate transporter DctA compare
Atu2709 -1.3 -8.7 3-isopropylmalate dehydratase, large subunit compare
Atu2787 -1.3 -1.2 hypothetical protein compare
Atu3297 -1.3 -8.6 two component sensor kinase for C4-dicarboxylate transport compare
Atu4614 -1.3 -6.5 glycosyltransferase compare
Atu3712 -1.3 -1.5 hypothetical protein compare
Atu0029 -1.3 -5.7 S-adenosylhomocysteine hydrolase compare
Atu3739 -1.3 -2.7 phosphoglycerate kinase compare
Atu4166 -1.3 -2.1 UDP-glucose 4-epimerase compare
Atu4617 -1.2 -5.4 dTDP-D-glucose-4,6-dehydratase compare
Atu5010 -1.2 -1.8 hypothetical protein compare
Atu0769 -1.2 -2.0 protoheme IX farnesyltransferase compare
Atu2757 -1.2 -5.2 nitrogen regulatory protein PII compare
Atu6112 -1.2 -1.8 conserved hypothetical protein compare
Atu4613 -1.2 -8.5 glycosyltransferase compare
Atu1620 -1.1 -7.4 triosephosphate isomerase compare
Atu0332 -1.1 -5.2 RNA polymerase sigma-54 factor compare
Atu0272 -1.1 -4.3 transcriptional regulator, MarR family compare
Atu0400 -1.1 -4.4 orotate phosphoribosyltransferase compare
Atu4618 -1.1 -7.2 dTDP-rhamnose-3,5-epimerase compare
Atu2718 -1.1 -5.0 homoserine O-succinyltransferase compare
Atu4609 -1.1 -6.8 glycosyltransferase compare
Atu2376 -1.1 -1.4 hypothetical protein compare
Atu2183 -1.1 -5.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2650 -1.1 -6.2 glycerol-3-phosphate dehydrogenase compare
Atu0953 -1.1 -1.1 hypothetical protein compare
Atu2554 -1.1 -2.2 lysyl-tRNA synthetase compare
Atu1624 -1.1 -5.7 transcriptional regulator, TetR family compare
Atu0660 -1.1 -4.7 hydrolase compare
Atu3707 -1.0 -2.3 phosphoserine aminotransferase compare
Atu0525 -1.0 -4.1 transcriptional regulator, LuxR family compare
Atu4711 -1.0 -4.9 two component sensor kinase compare
Atu1750 -1.0 -3.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu4615 -1.0 -6.5 glucose-1-phosphate thymidylyltransferase compare
Atu5114 -1.0 -1.6 hypothetical protein compare
Atu3009 -1.0 -1.2 exopolysaccharide production protein compare
Atu1463 -1.0 -3.5 glycine cleavage system component H compare
Atu0346 -1.0 -2.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2790 -1.0 -2.2 3-isopropylmalate dehydratase, small subunit compare
Atu6156 -1.0 -2.6 virA/G regulated gene compare
Atu3706 -1.0 -4.5 D-3-phosphoglycerate dehydrogenase compare
Atu8052 -1.0 -0.9 hypothetical protein compare
Atu4773 -0.9 -1.7 two component response regulator compare
Atu4608 -0.9 -6.7 hypothetical protein compare
Atu5483 -0.9 -2.8 GntR family transcriptional regulator compare
Atu0498 -0.9 -4.0 hypothetical protein compare
Atu1629 -0.9 -1.1 transcriptional regulator, ArsR family compare
Atu5157 -0.9 -1.0 hypothetical protein compare
Atu5124 -0.9 -4.1 glutamate-1-semialdehyde aminotransferase compare
Atu0678 -0.9 -3.0 histidyl-tRNA synthetase compare
Atu6020 -0.9 -2.5 conserved hypothetical protein compare
Atu5450 -0.9 -2.1 hypothetical protein compare
Atu0679 -0.9 -2.5 ATP phosphoribosyltransferase compare
Atu3754 -0.9 -3.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu5204 -0.9 -3.2 aldehyde dehydrogenase compare
Atu5470 -0.9 -1.4 hypothetical protein compare
Atu5519 -0.9 -2.5 hypothetical protein compare
Atu0524 -0.9 -2.9 transcriptional regulator, LuxR family compare
Atu2040 -0.8 -2.5 phosphoserine phosphatase compare
Atu0361 -0.8 -1.2 transcriptional regulator compare
Atu0606 -0.8 -1.3 hypothetical protein compare
Atu0038 -0.8 -3.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0886 -0.8 -1.1 hypothetical protein compare
Atu1891 -0.8 -1.8 cobalamin biosynthesis protein compare
Atu1588 -0.8 -4.2 homoserine dehydrogenase compare
Atu8082 -0.8 -1.4 hypothetical protein compare
Atu4505 -0.8 -3.8 LacI family transcriptional regulator compare
Atu0432 -0.8 -3.7 O-succinylhomoserine sulfhydrylase compare
Atu5455 -0.8 -2.2 hypothetical protein compare
Atu8138 -0.8 -1.0 hypothetical protein compare
Atu8088 -0.8 -1.3 hypothetical protein compare
Atu3032 -0.8 -2.4 hypothetical protein compare
Atu0099 -0.8 -3.4 prephenate dehydratase compare
Atu3205 -0.7 -4.7 hypothetical protein compare
Atu2155 -0.7 -5.6 methionine synthase compare
Atu0184 -0.7 -1.8 glucokinase compare
Atu5026 -0.7 -1.9 hypothetical protein compare
Atu5448 -0.7 -2.7 hypothetical protein compare
Atu1439 -0.7 -1.2 hypothetical protein compare
Atu0298 -0.7 -3.1 orotidine 5 compare
Atu1687 -0.7 -4.0 anthranilate phosphoribosyltransferase compare
Atu1952 -0.7 -1.0 hypothetical protein compare
Atu6165 -0.7 -0.3 hypothetical protein compare
Atu0041 -0.7 -1.3 glutamine amidotransferase compare
Atu2391 -0.7 -4.1 ABC transporter, substrate binding protein (nitrate/sulfonate/taurine/bicarbonate) compare
Atu2044 -0.7 -3.3 HFLC protein compare
Atu3036 -0.7 -2.9 dipeptide ABC transporter permease compare
Atu1030 -0.7 -0.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4317 -0.7 -2.1 TetR family transcriptional regulator compare
Atu6128 -0.7 -1.8 Conjugative pilin processing protease compare
Atu3075 -0.7 -2.9 TetR family transcriptional regulator compare
Atu3295 -0.7 -2.3 hypothetical protein compare
Atu3510 -0.6 -1.3 amidohydrolase compare
Atu3759 -0.6 -1.1 hypothetical protein compare
Atu4610 -0.6 -4.3 sugar nucleotide epimerase/dehydratase compare
Atu8194 -0.6 -2.5 hypothetical protein compare
Atu3461 -0.6 -1.3 GntR family transcriptional regulator compare
Atu0592 -0.6 -2.2 ABC transporter, membrane spanning protein compare
Atu2758 -0.6 -3.8 ammonium transporter compare
Atu8034 -0.6 -1.8 hypothetical protein compare
Atu4643 -0.6 -2.6 hypothetical protein compare
Atu1712 -0.6 -3.8 deoxyguanosinetriphosphate triphosphohydrolase compare
Atu1522 -0.6 -2.8 transcriptional regulator, LacI family compare
Atu1774 -0.6 -4.1 ABC transporter, substrate binding protein (peptide) compare
Atu0399 -0.6 -2.6 dihydroorotase compare
Atu1573 -0.6 -1.3 hypothetical protein compare
Atu2140 -0.6 -2.0 hypothetical protein compare
Atu5513 -0.6 -0.6 cold shock protein compare
Atu1462 -0.6 -4.5 glycine cleavage system protein P2 compare
Atu4173 -0.6 -1.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu3044 -0.6 -2.0 asparaginase compare
Atu0638 -0.6 -1.3 hypothetical protein compare
Atu3034 -0.6 -2.0 ROK family transcriptional regulator compare
Atu4306 -0.6 -3.0 two component response regulator compare
Atu3317 -0.6 -2.1 hypothetical protein compare
Atu3486 -0.6 -1.7 DeoR family transcriptional regulator compare
Atu0039 -0.6 -0.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu0767 -0.6 -2.7 cytochrome c oxidase subunit II compare
Atu0031 -0.6 -0.8 PTS system, IIA component compare
Atu0152 -0.6 -1.0 hypothetical protein compare
Atu4872 -0.6 -3.2 LysR family transcriptional regulator compare
Atu4850 -0.6 -3.5 hypothetical protein compare
Atu1163 -0.6 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu6153 -0.6 -1.3 conserved hypothetical protein compare
Atu4890 -0.6 -1.1 IS426 transposase compare
Atu1140 -0.6 -1.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu5161 -0.6 -1.9 hypothetical protein compare
Atu3012 -0.6 -0.8 hypothetical protein compare
Atu2123 -0.6 -2.6 methylenetetrahydrofolate reductase compare
Atu3572 -0.6 -3.0 transcriptional regulator compare
Atu2390 -0.6 -3.9 ABC transporter, membrane spanning protein compare
Atu2067 -0.6 -0.6 hypothetical protein compare
Atu4873 -0.6 -2.8 TetR family transcriptional regulator compare
Atu0661 -0.6 -4.1 glycosyltransferase compare
Atu2728 -0.6 -2.5 beta (1-->2) glucan export ATP-binding protein compare
Atu4866 -0.6 -4.2 hypothetical protein compare
Atu3327 -0.6 -1.6 succinoglycan exopolysaccharide synthesis protein compare
Atu0657 -0.6 -3.4 hypothetical protein compare
Atu1490 -0.6 -1.2 arsenate reductase compare
Atu4870 -0.6 -3.5 NADP-dependent quinone oxidoreductase compare
Atu8115 -0.5 -3.3 Hypothetical Protein compare
Atu4161 -0.5 -1.1 hypothetical protein compare
Atu5414 -0.5 -2.3 Xaa-Pro dipeptidase compare
Atu0017 -0.5 -1.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu8056 -0.5 -0.7 hypothetical protein compare
Atu0894 -0.5 -1.0 ABC transporter, membrane spanning protein compare
Atu3763 -0.5 -1.0 hypothetical protein compare
Atu3024 -0.5 -3.7 sugar ABC transporter permease compare
Atu5487 -0.5 -1.0 hypothetical protein compare
Atu0895 -0.5 -1.5 ABC transporter, substrate binding protein compare
Atu2389 -0.5 -2.5 ABC transporter, membrane spanning protein compare
Atu2683 -0.5 -1.0 hypothetical protein compare
Atu6157 -0.5 -1.1 conserved hypothetical protein compare
Atu8162 -0.5 -0.9 hypothetical protein compare
Atu2192 -0.5 -0.8 hypothetical protein compare
Atu1026 -0.5 -0.7 hypothetical protein compare
Atu2827 -0.5 -0.9 hypothetical protein compare
Atu2058 -0.5 -1.9 hypothetical protein compare
Atu1220 -0.5 -2.5 methylated-DNA--protein-cysteine methyltransferase compare
Atu3485 -0.5 -2.8 short chain dehydrogenase compare
Atu3497 -0.5 -0.8 hypothetical protein compare
Atu0572 -0.5 -1.3 hypothetical protein compare
Atu3608 -0.5 -1.9 hypothetical protein compare
Atu1339 -0.5 -1.1 ribonuclease E compare


Specific Phenotypes

For 15 genes in this experiment

For nitrogen source Orotic acid in Agrobacterium fabrum C58

For nitrogen source Orotic acid across organisms