Experiment set3IT092 for Pseudomonas putida KT2440

Compare to:

LB with Cholinium lysinate 10 vol%

200 most important genes:

  gene name fitness t score description  
PP_0846 -4.2 -2.9 DnaK-like molecular chaperone specific for IscU compare
PP_4723 -3.2 -11.2 Carbamoyl-phosphate synthase large chain compare
PP_4724 -3.0 -6.4 Carbamoyl-phosphate synthase small chain compare
PP_0164 -2.9 -10.1 conserved protein of unknown function compare
PP_4993 -2.5 -5.1 Glutathione synthetase compare
PP_4902 -2.4 -3.2 Oligoribonuclease compare
PP_4342 -2.2 -4.3 flagellar synthesis regulator, putative ATPase compare
PP_0691 -2.2 -4.3 Glutamate 5-kinase compare
PP_4943 -2.0 -2.8 putative Glycosyl transferase compare
PP_0833 -2.0 -2.6 queuine tRNA-ribosyltransferase compare
PP_2378 -2.0 -2.9 Fe/S biogenesis protein NfuA compare
PP_4937 -2.0 -4.2 toluene tolerance protein compare
PP_1216 -1.9 -3.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5289 -1.9 -4.4 Acetylglutamate kinase compare
PP_1629 -1.9 -5.7 Protein RecA compare
PP_5329 -1.8 -4.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2883 -1.8 -3.1 conserved protein of unknown function compare
PP_4120 -1.8 -4.1 NADH-quinone oxidoreductase subunit B compare
PP_1428 -1.7 -2.7 Sigma factor AlgU negative regulatory protein compare
PP_0065 -1.7 -3.6 NAD-binding component of TrK potassium transporter compare
PP_0435 -1.7 -9.9 Peptidase, M23/M37 family compare
PP_5045 -1.7 -4.3 tRNA sulfurtransferase compare
PP_0874 -1.6 -3.5 conserved protein of unknown function compare
PP_1468 -1.6 -2.7 Tyrosine recombinase XerD compare
PP_1994 -1.6 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_4895 -1.6 -3.3 tRNA dimethylallyltransferase compare
PP_3365 -1.5 -1.9 Acetolactate synthase compare
PP_3239 -1.5 -2.7 putative cointegrate resolution protein T Tn4652 compare
PP_0856 -1.4 -3.3 conserved lipoprotein of unknown function compare
PP_1616 -1.4 -7.7 formaldehyde dehydrogenase, glutathione-dependent compare
PP_2903 -1.4 -2.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4999 -1.4 -1.6 dihydroorotase-like protein compare
PP_4561 -1.3 -1.4 stress response protein compare
PP_5230 -1.3 -4.0 Tyrosine recombinase XerC compare
PP_1733 -1.3 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_5706 -1.2 -2.4 Sec translocation complex - SecG subunit compare
PP_1055 -1.2 -1.4 Type II secretion pathway protein GspN compare
PP_2820 -1.2 -1.3 HTH-type transcriptional regulator nfxB compare
PP_3999 -1.2 -5.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5027 -1.2 -2.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1142 -1.2 -1.6 conserved protein of unknown function compare
PP_4124 -1.2 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_3730 -1.2 -2.8 Transcriptional regulatory protein AruR compare
PP_0339 -1.1 -3.4 Pyruvate dehydrogenase E1 component compare
PP_4004 -1.1 -2.5 DNA translocase FtsK compare
PP_0872 -1.1 -4.5 Peptide chain release factor 3 compare
PP_2144 -1.1 -3.0 Transcriptional regulator, TetR family compare
PP_0063 -1.1 -3.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4131 -1.1 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_5310 -1.1 -3.2 junction-specific ATP-dependent DNA helicase compare
PP_4700 -1.1 -0.7 pantothenate synthetase compare
PP_2336 -1.1 -2.9 aconitate hydratase 1 compare
PP_1895 -1.1 -3.6 putative ABC transporter - ATP binding subunit compare
PP_2145 -1.1 -4.5 beta-N-acetylglucosaminidase compare
PP_4126 -1.1 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4989 -1.1 -2.8 Protein PilJ compare
PP_2087 -1.1 -1.6 CmpX protein compare
PP_5337 -1.1 -3.9 LysR family transcriptional regulator compare
PP_3810 -1.0 -1.6 conserved protein of unknown function compare
PP_4263 -1.0 -3.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_3312 -1.0 -1.1 putative Heat shock protein compare
PP_1489 -1.0 -3.1 CheW domain protein compare
PP_0852 -1.0 -2.7 Transcriptional regulator, Cro/CI family compare
PP_4130 -1.0 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4880 -1.0 -5.6 exoribonuclease R compare
PP_2414 -1.0 -2.2 conserved exported protein of unknown function compare
PP_0166 -1.0 -7.4 HlyD family secretion protein compare
PP_1764 -1.0 -3.1 Phosphoglycolate phosphatase 2 compare
PP_4804 -1.0 -2.6 RlpA-like lipoprotein compare
PP_4726 -1.0 -2.1 Chaperone protein DnaJ compare
PP_4199 -1.0 -1.2 putative Lipoprotein compare
PP_4122 -1.0 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0832 -1.0 -2.7 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4964 -0.9 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_3508 -0.9 -3.2 Protein CobW compare
PP_4642 -0.9 -1.3 Cyclic diguanosine monophosphate-binding protein compare
PP_0165 -0.9 -6.7 GGDEF domain protein compare
PP_5232 -0.9 -1.8 conserved protein of unknown function compare
PP_2442 -0.9 -2.0 conserved protein of unknown function, DUF480 family compare
PP_3821 -0.9 -5.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0168 -0.9 -7.7 putative surface adhesion protein compare
PP_5170 -0.9 -3.5 sulfate ABC transporter, inner membrane subunit CysT compare
PP_0393 -0.9 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4519 -0.9 -6.5 Agglutination protein compare
PP_5313 -0.9 -1.1 DNA-binding protein HU-alpha compare
PP_4697 -0.9 -2.8 poly(A) polymerase compare
PP_1088 -0.9 -4.1 Argininosuccinate synthase compare
PP_5324 -0.9 -1.7 Response regulator compare
PP_0167 -0.9 -6.8 Toxin secretion ATP-binding protein compare
PP_3409 -0.9 -2.1 putative Cobalamin biosynthesis protein cobE compare
PP_1381 -0.8 -1.5 4-carboxymuconolactone decarboxylase compare
PP_5309 -0.8 -2.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0888 -0.8 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_0834 -0.8 -1.9 Sec translocation complex subunit YajC compare
PP_2137 -0.8 -1.3 beta-ketoadipyl CoA thiolase, beta component compare
PP_0119 -0.8 -2.9 putative zinc uptake regulation protein ZUR compare
PP_3551 -0.8 -1.6 DNA-binding response regulator, LuxR family compare
PP_2631 -0.8 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2160 -0.8 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2016 -0.8 -2.4 conserved protein of unknown function compare
PP_5338 -0.8 -1.9 aspartate ammonia-lyase compare
PP_4129 -0.8 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0025 -0.8 -1.1 hypothetical protein compare
PP_2499 -0.8 -1.2 conserved protein of unknown function compare
PP_2360 -0.8 -2.2 putative type 1 pili subunit CsuA/B protein compare
PP_0703 -0.8 -2.5 putative Transmembrane sensor compare
PP_2740 -0.8 -1.4 Transcriptional regulator, MerR family compare
PP_1214 -0.8 -1.2 putative transcriptional regulatory protein compare
PP_2148 -0.8 -4.8 transcription-repair coupling factor compare
PP_0414 -0.7 -2.2 Polyamine ABC transporter, permease protein compare
PP_5328 -0.7 -2.4 putative phosphate transport system permease protein compare
PP_3408 -0.7 -2.7 cobalt transporter subunit A compare
PP_2302 -0.7 -3.0 DNA-binding, ATP-dependent protease compare
PP_1553 -0.7 -1.8 conserved protein of unknown function compare
PP_3627 -0.7 -3.9 conserved protein of unknown function compare
PP_5038 -0.7 -2.6 conserved lipoprotein of unknown function compare
PP_1492 -0.7 -4.3 Sensor histidine kinase/response regulator compare
PP_1896 -0.7 -4.2 putative ABC transporter - permease subunit compare
PP_0048 -0.7 -1.1 conserved protein of unknown function compare
PP_3094 -0.7 -2.6 conserved exported protein of unknown function compare
PP_1778 -0.7 -3.1 Lipopolysaccharide ABC export system, permease protein compare
PP_2547 -0.7 -2.4 Transcriptional regulator, LysR family compare
PP_1719 -0.7 -3.9 Tail-specific protease prc compare
PP_1779 -0.7 -2.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4156 -0.7 -2.0 Transcriptional regulator, LysR family compare
PP_3679 -0.7 -2.4 conserved protein of unknown function compare
PP_3649 -0.7 -1.9 Transcriptional regulator, GntR family compare
PP_1615 -0.7 -4.5 Transcriptional regulator, LysR family compare
PP_1217 -0.7 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5352 -0.7 -4.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0979 -0.7 -2.6 DNA polymerase III subunit chi compare
PP_4204 -0.7 -2.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2280 -0.7 -1.4 conserved protein of unknown function compare
PP_4988 -0.7 -2.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3286 -0.7 -2.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1325 -0.7 -3.6 putative lipoprotein compare
PP_4470 -0.7 -1.7 putative transcriptional regulator (Arc domain-containing) compare
PP_0405 -0.7 -5.6 conserved protein of unknown function compare
PP_1275 -0.7 -2.7 conserved protein of unknown function compare
PP_0957 -0.7 -1.3 D-arabinose 5-phosphate isomerase compare
PP_0273 -0.7 -2.4 conserved protein of unknown function compare
PP_3248 -0.7 -1.7 Dyp-type peroxidase family protein compare
PP_4660 -0.6 -2.6 Transcriptional regulator, LysR family compare
PP_1813 -0.6 -1.8 ComEA-related protein compare
PP_4373 -0.6 -4.1 Transcriptional regulator FleQ compare
PP_3512 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_1459 -0.6 -2.9 CBS domain protein compare
PP_5279 -0.6 -1.9 conserved protein of unknown function compare
PP_1353 -0.6 -1.3 conserved membrane protein of unknown function compare
PP_0949 -0.6 -3.3 putative ATP-binding protein UPF0042 compare
PP_4787 -0.6 -1.7 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3392 -0.6 -1.2 conserved protein of unknown function compare
PP_4929 -0.6 -2.3 Transcriptional regulator, LysR family compare
PP_5001 -0.6 -1.2 protease HslVU, ATPase component compare
PP_1430 -0.6 -4.0 putative periplasmic serine endoprotease DegP-like compare
PP_4792 -0.6 -1.0 conserved exported protein of unknown function compare
PP_5571 -0.6 -1.0 conserved protein of unknown function compare
PP_4546 -0.6 -2.0 ATP-dependent helicase HrpA compare
PP_5456 -0.6 -1.3 conserved protein of unknown function compare
PP_5303 -0.6 -2.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0218 -0.6 -3.6 Sensory box protein compare
PP_2864 -0.6 -2.2 conserved protein of unknown function compare
PP_5583 -0.6 -1.0 conserved protein of unknown function compare
PP_2299 -0.6 -1.5 Trigger factor compare
PP_4390 -0.6 -3.2 flagellar basal-body rod protein FlgC compare
PP_4214 -0.6 -2.3 pyoverdine biosynthesis related protein compare
PP_4910 -0.6 -1.6 conserved protein of unknown function compare
PP_0040 -0.6 -1.9 hypothetical protein compare
PP_1494 -0.6 -2.9 Response regulator/GGDEF domain protein compare
PP_4836 -0.6 -1.8 conserved exported protein of unknown function compare
PP_4799 -0.6 -1.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0958 -0.6 -2.8 phospholipid ABC transporter ATP-binding subunit compare
PP_5084 -0.6 -3.5 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5688 -0.6 -3.0 putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain compare
PP_0768 -0.6 -2.6 Response regulator/TPR domain protein compare
PP_0184 -0.6 -1.8 Argininosuccinate lyase compare
PP_1742 -0.6 -1.7 conserved inner membrane protein of unknown function compare
PP_4930 -0.6 -2.2 putative small multidrug resistance protein compare
PP_3799 -0.6 -1.9 conserved exported protein of unknown function compare
PP_2110 -0.6 -2.3 putative ribosomal large subunit pseudouridine synthase compare
PP_0127 -0.6 -2.4 Thiol:disulfide interchange protein compare
PP_0566 -0.6 -0.9 translation-related factor compare
PP_1658 -0.6 -1.5 conserved protein of unknown function compare
PP_4830 -0.6 -2.2 precorrin-6Y C(5,15)-methyltransferase compare
PP_1643 -0.6 -2.1 conserved membrane protein of unknown function compare
PP_3116 -0.6 -1.9 transcriptional repressor compare
PP_2831 -0.6 -2.6 L-fuconate dehydratase compare
PP_0191 -0.6 -1.3 Transcriptional regulatory protein AlgQ compare
PP_4722 -0.6 -1.8 Transcription elongation factor GreA compare
PP_0630 -0.6 -0.7 DNA gyrase inhibitor YacG compare
PP_1982 -0.6 -2.2 small heat shock protein IbpA compare
PP_1366 -0.6 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_5227 -0.5 -2.9 diaminopimelate decarboxylase compare
PP_1008 -0.5 -1.6 RNA polymerase subunit sigma-24 compare
PP_5315 -0.5 -1.6 Rubredoxin-1 compare
PP_5053 -0.5 -2.3 Protein-export protein SecB compare
PP_4720 -0.5 -1.3 putative RNA binding protein compare
PP_1676 -0.5 -2.0 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1491 -0.5 -2.3 CheW domain protein compare
PP_1898 -0.5 -0.8 MotA/TolQ/ExbB proton channel family protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cholinium lysinate in Pseudomonas putida KT2440

For stress Cholinium lysinate across organisms