Experiment set3IT092 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6D2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF267 -4.2 -9.3 Transcriptional activator RfaH compare
GFF2808 -4.2 -9.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF4601 -3.9 -7.3 Phosphoglucomutase (EC 5.4.2.2) compare
GFF20 -3.3 -8.7 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF388 -3.2 -10.0 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF1832 -3.1 -13.0 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF1830 -3.1 -12.7 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF2213 -2.8 -7.5 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF3395 -2.6 -1.7 Putative outer membrane protein compare
GFF4355 -2.4 -2.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF2466 -2.3 -1.7 Sialic acid utilization regulator, RpiR family compare
GFF384 -2.2 -2.9 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF188 -2.1 -8.3 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF3229 -2.0 -3.1 Secreted effector protein compare
GFF2047 -1.8 -8.3 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF873 -1.8 -1.8 hypothetical protein compare
GFF2906 -1.6 -4.8 Protein yifE compare
GFF2845 -1.6 -4.0 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF2409 -1.6 -5.5 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF1634 -1.6 -3.1 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF4353 -1.6 -4.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF1571 -1.5 -1.0 FIG00638334: hypothetical protein compare
GFF387 -1.5 -2.4 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF236 -1.5 -1.4 FIG00545237: hypothetical protein compare
GFF518 -1.5 -1.8 rRNA small subunit methyltransferase J compare
GFF3506 -1.4 -1.7 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF3603 -1.4 -2.6 Secretion system apparatus protein SsaM compare
GFF2431 -1.4 -2.9 Chaperone protein HscA compare
GFF1219 -1.3 -2.4 FIG01048676: hypothetical protein compare
GFF4653 -1.3 -3.1 TolA protein compare
GFF2907 -1.3 -4.7 HTH-type transcriptional regulator hdfR compare
GFF4861 -1.3 -3.0 L-fucose mutarotase compare
GFF1440 -1.3 -8.2 FIG00638940: hypothetical protein compare
GFF2436 -1.3 -1.7 Iron-sulfur cluster regulator IscR compare
GFF4337 -1.2 -2.1 FIG001943: hypothetical protein YajQ compare
GFF3502 -1.2 -1.1 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF1503 -1.2 -4.4 Lipoprotein nlpI precursor compare
GFF121 -1.2 -3.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2623 -1.2 -1.0 Putative inner membrane protein compare
GFF3765 -1.2 -1.0 proteinase inhibitor compare
GFF1620 -1.1 -0.9 Copper resistance protein CopC compare
GFF115 -1.1 -3.6 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF1673 -1.1 -2.9 Flagellar transcriptional activator FlhD compare
GFF3515 -1.1 -1.8 FIG00637864: hypothetical protein compare
GFF629 -1.1 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF1334 -1.1 -1.2 Uncharacterized protein YohL compare
GFF4652 -1.1 -2.9 Tol biopolymer transport system, TolR protein compare
GFF3050 -1.1 -2.9 UPF0301 protein YqgE compare
GFF110 -1.1 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF3618 -1.1 -4.0 Purine nucleotide synthesis repressor compare
GFF2948 -1.0 -2.3 PTS system nitrogen-specific IIA component, PtsN compare
GFF1088 -1.0 -0.9 FIG01045785: hypothetical protein compare
GFF3555 -1.0 -1.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF4354 -1.0 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4010 -1.0 -2.1 Flagellar motor switch protein FliN compare
GFF3450 -1.0 -3.9 Transcriptional regulator, MerR family compare
GFF4175 -1.0 -2.2 Uncharacterized protein YfiR precursor compare
GFF3417 -1.0 -3.4 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
GFF4655 -1.0 -2.6 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1234 -1.0 -1.5 hypothetical protein compare
GFF1114 -1.0 -1.9 FIG01200701: possible membrane protein compare
GFF1554 -1.0 -2.7 Putative transcriptional regulator compare
GFF4322 -1.0 -2.6 Phosphatidylglycerophosphatase A (EC 3.1.3.27) compare
GFF1221 -0.9 -1.4 hypothetical protein compare
GFF3632 -0.9 -2.0 Transcriptional regulator SlyA compare
GFF1411 -0.9 -3.3 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF4642 -0.9 -0.9 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
GFF4243 -0.9 -0.9 Probable secreted protein compare
GFF1747 -0.9 -1.5 putative inner membrane protein compare
GFF1884 -0.9 -1.4 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF192 -0.9 -3.7 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF2758 -0.9 -1.2 FIG01045187: hypothetical protein compare
GFF4609 -0.9 -2.9 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF4643 -0.8 -1.2 hypothetical protein compare
GFF4759 -0.8 -2.9 Surface presentation of antigens protein SpaM compare
GFF4598 -0.8 -2.1 Uncharacterized protein ybfE compare
GFF645 -0.8 -1.0 Membrane protein associated with oxaloacetate decarboxylase compare
GFF4586 -0.8 -1.4 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) compare
GFF4118 -0.8 -1.4 tRNA-Thr-CGT compare
GFF2869 -0.8 -1.8 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF4387 -0.8 -2.1 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF2148 -0.8 -2.5 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF2160 -0.8 -1.7 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF945 -0.8 -2.2 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF357 -0.8 -2.0 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF4619 -0.8 -1.5 hypothetical protein compare
GFF2310 -0.8 -1.4 hypothetical protein compare
GFF3212 -0.8 -1.0 FIG01046763: hypothetical protein compare
GFF2313 -0.8 -4.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF2669 -0.8 -2.0 Putative outer membrane lipoprotein compare
GFF3574 -0.8 -2.7 Tetrathionate reductase subunit B compare
GFF1408 -0.8 -2.9 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF360 -0.8 -1.1 hypothetical protein compare
GFF2832 -0.8 -1.3 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare
GFF3943 -0.7 -0.8 Propanediol dehydratase small subunit (EC 4.2.1.28) compare
GFF3625 -0.7 -0.8 Transcriptional regulator, TetR family compare
GFF2733 -0.7 -1.8 Membrane protein YciC, linked to IspA compare
GFF748 -0.7 -1.6 Protein ybjI compare
GFF597 -0.7 -1.8 DNA-damage-inducible protein J compare
GFF4021 -0.7 -1.3 FIG01200701: possible membrane protein compare
GFF975 -0.7 -1.6 FIG074102: hypothetical protein compare
GFF4683 -0.7 -1.2 Phage minor tail protein compare
GFF2178 -0.7 -1.1 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
GFF2873 -0.7 -0.7 hypothetical protein compare
GFF3709 -0.7 -1.6 Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF201 -0.7 -1.1 Ferredoxin-like protein FixX compare
GFF2392 -0.7 -1.4 Peptide deformylase (EC 3.5.1.88) compare
GFF3484 -0.7 -1.4 FIG002003: Protein YdjA compare
GFF4158 -0.7 -0.6 tmRNA-binding protein SmpB compare
GFF1061 -0.7 -1.7 Transcriptional repressor protein TrpR compare
GFF3544 -0.7 -1.0 Electron transfer flavoprotein, beta subunit compare
GFF1502 -0.7 -4.5 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF3722 -0.7 -0.9 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF4160 -0.7 -1.9 UPF0125 protein yfjF compare
GFF2946 -0.7 -2.3 RNA polymerase sigma-54 factor RpoN compare
GFF2630 -0.7 -3.8 Cytochrome b(561) compare
GFF4315 -0.7 -2.6 Hypothetical lipoprotein yajI compare
GFF2513 -0.7 -1.2 FIG00637950: hypothetical protein compare
GFF3007 -0.7 -3.7 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) compare
GFF3558 -0.7 -1.4 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF753 -0.7 -1.4 Glutaredoxin 1 compare
GFF1415 -0.7 -0.7 UPF0337 protein yjbJ compare
GFF2179 -0.7 -3.3 Glycine cleavage system transcriptional antiactivator GcvR compare
GFF3543 -0.7 -2.8 Electron transfer flavoprotein, alpha subunit compare
GFF1356 -0.7 -1.4 Acetate operon repressor compare
GFF3355 -0.7 -2.0 Flagellar basal-body rod protein FlgC compare
GFF4314 -0.7 -0.6 hypothetical protein compare
GFF3354 -0.7 -1.9 Flagellar basal-body rod protein FlgB compare
GFF4766 -0.7 -0.9 Invasion protein invH precursor compare
GFF2028 -0.7 -1.3 Type III secretion and flagellar regulator RtsA compare
GFF3439 -0.7 -1.4 hypothetical protein compare
GFF4184 -0.6 -4.8 ClpB protein compare
GFF3329 -0.6 -4.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
GFF122 -0.6 -3.4 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF3942 -0.6 -2.1 Propanediol dehydratase reactivation factor large subunit compare
GFF3248 -0.6 -2.2 Outer membrane protein A precursor compare
GFF2516 -0.6 -2.8 Outer membrane protein C precursor compare
GFF1205 -0.6 -1.7 hypothetical protein compare
GFF261 -0.6 -1.1 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes compare
GFF2657 -0.6 -3.0 Universal stress protein E compare
GFF1779 -0.6 -2.6 Putative ABC transporter membrane protein compare
GFF1194 -0.6 -3.2 DNA replication protein compare
GFF3430 -0.6 -3.5 Periplasmic lysozyme inhibitor of c-type lysozyme compare
GFF1270 -0.6 -1.7 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF1472 -0.6 -1.3 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF3549 -0.6 -1.7 Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282) compare
GFF3320 -0.6 -1.0 Transcriptional regulator CsgD for 2nd curli operon compare
GFF1312 -0.6 -1.5 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF4654 -0.6 -2.5 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF255 -0.6 -1.4 hypothetical protein compare
GFF2638 -0.6 -2.0 D-lactate dehydrogenase (EC 1.1.1.28) compare
GFF4822 -0.6 -1.5 Queuosine biosynthesis QueD, PTPS-I compare
GFF2094 -0.6 -1.6 Putative outer membrane lipoprotein compare
GFF160 -0.6 -2.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3393 -0.6 -2.1 FIG01200701: possible membrane protein compare
GFF4304 -0.6 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
GFF3495 -0.6 -2.5 Succinylarginine dihydrolase (EC 3.5.3.23) compare
GFF2986 -0.6 -2.0 Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) compare
GFF1063 -0.6 -2.0 Phosphoglycerate mutase (EC 5.4.2.1) compare
GFF2163 -0.6 -2.4 FIG01047222: hypothetical protein compare
GFF4095 -0.6 -1.2 LysR-family transcriptional regulator SinR compare
GFF1233 -0.6 -2.8 Transposase compare
GFF190 -0.6 -2.3 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF616 -0.6 -1.1 hypothetical protein compare
GFF1259 -0.6 -2.7 Error-prone repair protein UmuD compare
GFF707 -0.6 -1.5 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
GFF4715 -0.6 -1.3 Formate hydrogenlyase subunit 4 compare
GFF3377 -0.6 -2.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF4234 -0.6 -1.0 Possible transmembrane regulator compare
GFF1961 -0.6 -2.0 Phosphoglycerate transport system transcriptional regulatory protein PgtA compare
GFF2663 -0.6 -0.5 Thiol peroxidase, Tpx-type (EC 1.11.1.15) compare
GFF2493 -0.6 -1.5 FIG01047459: hypothetical protein compare
GFF973 -0.6 -1.1 FIG074102: hypothetical protein compare
GFF1449 -0.6 -2.7 CidA-associated membrane protein CidB compare
GFF4915 -0.6 -3.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
GFF1642 -0.6 -0.8 putative cytoplasmic protein compare
GFF2539 -0.6 -1.1 putative phage-related secreted protein compare
GFF2220 -0.5 -2.9 Nitrogen regulation protein NR(I) compare
GFF186 -0.5 -2.2 FIG01045743: hypothetical protein compare
GFF3617 -0.5 -1.4 LysR-family transcriptional regulator YdhB compare
GFF1343 -0.5 -0.7 Attachment invasion locus protein precursor compare
GFF4125 -0.5 -0.8 Mobile element protein compare
GFF1815 -0.5 -1.7 Electron transport complex protein RnfA compare
GFF3469 -0.5 -2.6 hypothetical protein compare
GFF2316 -0.5 -2.9 Transcriptional (co)regulator CytR compare
GFF2861 -0.5 -2.7 FIG01045929: hypothetical protein compare
GFF1174 -0.5 -1.6 FIG00642834: hypothetical protein compare
GFF1505 -0.5 -2.1 Tryptophan-specific transport protein compare
GFF2043 -0.5 -2.9 Sulfate transporter, CysZ-type compare
GFF517 -0.5 -3.3 Oligopeptidase A (EC 3.4.24.70) compare
GFF4865 -0.5 -2.0 Glycine cleavage system transcriptional activator GcvA compare
GFF4417 -0.5 -0.9 Methionine ABC transporter ATP-binding protein compare
GFF3258 -0.5 -1.3 LSU m5C1962 methyltransferase RlmI compare
GFF1109 -0.5 -1.2 Putative LysR family transcriptional regulator compare
GFF680 -0.5 -2.6 Molybdenum cofactor biosynthesis protein MoaC compare
GFF1781 -0.5 -0.9 Putative binding-protein-dependent transport system compare
GFF4537 -0.5 -0.8 CrcB protein compare
GFF2771 -0.5 -1.1 FIG002708: Protein SirB1 compare
GFF3362 -0.5 -1.2 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF2863 -0.5 -0.5 FIG074102: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6D2_phage across organisms