Experiment set3IT092 for Agrobacterium fabrum C58

Compare to:

Orotic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu2500 -2.9 -10.3 monooxygenase (pyrimidine utilization protein A) compare
Atu2499 -2.4 -10.6 Isochorismatase compare
Atu4530 -2.3 -7.0 TetR family transcriptional regulator compare
Atu1030 -2.3 -2.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1570 -2.3 -1.4 hypothetical protein compare
Atu6114 -2.2 -2.3 hypothetical protein compare
Atu2498 -2.2 -7.8 hypothetical protein compare
Atu2495 -2.2 -4.2 flavoprotein oxidoreductase compare
Atu1359 -2.2 -1.5 dnaK deletion suppressor protein compare
Atu0272 -2.1 -8.8 transcriptional regulator, MarR family compare
Atu2497 -2.0 -8.7 hydrolase compare
Atu2496 -2.0 -7.8 nitroreducatase compare
Atu4685 -1.9 -10.2 LacI family transcriptional regulator compare
Atu0043 -1.9 -2.1 imidazoleglycerol-phosphate dehydratase compare
Atu3885 -1.8 -9.7 inositol monophosphatase compare
Atu0895 -1.7 -3.5 ABC transporter, substrate binding protein compare
Atu4702 -1.7 -5.2 GntR family transcriptional regulator compare
Atu1028 -1.6 -2.4 hypothetical protein compare
Atu3707 -1.6 -2.4 phosphoserine aminotransferase compare
Atu2757 -1.5 -4.9 nitrogen regulatory protein PII compare
Atu2791 -1.5 -5.1 3-isopropylmalate dehydrogenase compare
Atu3706 -1.5 -6.4 D-3-phosphoglycerate dehydrogenase compare
Atu4166 -1.5 -2.6 UDP-glucose 4-epimerase compare
Atu0346 -1.5 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2379 -1.5 -7.5 phosphomannomutase compare
Atu5468 -1.4 -1.7 hypothetical protein compare
Atu3469 -1.4 -2.7 phosphoglyceromutase compare
Atu0372 -1.4 -8.0 hypothetical protein compare
Atu2328 -1.4 -7.4 hypothetical protein compare
Atu0679 -1.4 -4.5 ATP phosphoribosyltransferase compare
Atu3730 -1.4 -1.4 hypothetical protein compare
Atu3294 -1.4 -5.6 GntR family transcriptional regulator compare
Atu1750 -1.4 -6.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu3008 -1.4 -1.1 hypothetical protein compare
Atu3297 -1.4 -10.0 two component sensor kinase for C4-dicarboxylate transport compare
Atu5513 -1.3 -1.3 cold shock protein compare
Atu2718 -1.3 -4.5 homoserine O-succinyltransferase compare
Atu1624 -1.3 -6.4 transcriptional regulator, TetR family compare
Atu3353 -1.3 -7.1 mannose-1-phosphate guanylyltransferase compare
Atu0941 -1.3 -1.1 hypothetical protein compare
Atu8203 -1.3 -2.1 hypothetical protein compare
Atu0400 -1.3 -3.4 orotate phosphoribosyltransferase compare
Atu4773 -1.3 -1.9 two component response regulator compare
Atu0361 -1.2 -1.8 transcriptional regulator compare
Atu1446 -1.2 -2.3 two component response regulator compare
Atu0769 -1.2 -1.7 protoheme IX farnesyltransferase compare
Atu2790 -1.2 -2.1 3-isopropylmalate dehydratase, small subunit compare
Atu2633 -1.2 -2.0 RhtB family transporter compare
Atu3311 -1.2 -8.3 phosphomannose isomerase compare
Atu1439 -1.2 -2.2 hypothetical protein compare
Atu4614 -1.2 -6.1 glycosyltransferase compare
Atu0298 -1.2 -3.8 orotidine 5 compare
Atu0660 -1.2 -4.1 hydrolase compare
Atu1302 -1.1 -1.5 hypothetical protein compare
Atu0141 -1.1 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu8046 -1.1 -1.8 hypothetical protein compare
Atu4613 -1.1 -7.4 glycosyltransferase compare
Atu0690 -1.1 -1.7 hypothetical protein compare
Atu3298 -1.1 -6.7 C4-dicarboxylate transporter DctA compare
Atu3296 -1.1 -6.0 two component response regulator for C4-dicarboxylate transport compare
Atu0331 -1.1 -2.8 sigma-54 modulation protein compare
Atu0029 -1.1 -3.7 S-adenosylhomocysteine hydrolase compare
Atu0035 -1.1 -4.8 phosphoenolpyruvate carboxykinase compare
Atu2650 -1.1 -5.6 glycerol-3-phosphate dehydrogenase compare
Atu1219 -1.1 -1.1 hypothetical protein compare
Atu5470 -1.1 -1.7 hypothetical protein compare
Atu5483 -1.1 -3.0 GntR family transcriptional regulator compare
Atu0300 -1.0 -4.0 methyltransferase compare
Atu2163 -1.0 -1.6 hypothetical protein compare
Atu6158 -1.0 -2.3 conserved hypothetical protein compare
Atu4617 -1.0 -5.7 dTDP-D-glucose-4,6-dehydratase compare
Atu0678 -1.0 -3.6 histidyl-tRNA synthetase compare
Atu6120 -1.0 -2.1 HNS-type DNA binding protein compare
Atu0525 -1.0 -3.5 transcriptional regulator, LuxR family compare
Atu3754 -1.0 -3.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4711 -1.0 -3.2 two component sensor kinase compare
Atu0099 -1.0 -4.2 prephenate dehydratase compare
Atu4609 -1.0 -6.4 glycosyltransferase compare
Atu5186 -1.0 -1.1 hypothetical protein compare
Atu1620 -0.9 -6.0 triosephosphate isomerase compare
Atu1182 -0.9 -1.8 hypothetical protein compare
Atu2709 -0.9 -7.4 3-isopropylmalate dehydratase, large subunit compare
Atu0115 -0.9 -0.9 hypothetical protein compare
Atu0332 -0.9 -4.3 RNA polymerase sigma-54 factor compare
Atu4161 -0.9 -1.9 hypothetical protein compare
Atu6036 -0.9 -0.5 entry-exclusion protein compare
Atu4505 -0.9 -4.4 LacI family transcriptional regulator compare
Atu1687 -0.9 -4.4 anthranilate phosphoribosyltransferase compare
Atu3205 -0.9 -6.1 hypothetical protein compare
Atu1163 -0.9 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2433 -0.9 -1.1 hypothetical protein compare
Atu4072 -0.9 -1.6 nodulation protein N compare
Atu5124 -0.9 -4.2 glutamate-1-semialdehyde aminotransferase compare
Atu5157 -0.9 -1.3 hypothetical protein compare
Atu4608 -0.9 -6.3 hypothetical protein compare
Atu1141 -0.9 -3.8 Phosphoribosylglycinamide synthetase compare
Atu4615 -0.9 -4.0 glucose-1-phosphate thymidylyltransferase compare
Atu0319 -0.9 -1.1 ubiquinone biosynthesis protein compare
Atu0188 -0.9 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu4610 -0.9 -5.0 sugar nucleotide epimerase/dehydratase compare
Atu2083 -0.9 -2.5 DNA repair protein RecN compare
Atu2758 -0.9 -4.7 ammonium transporter compare
Atu3755 -0.8 -2.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2036 -0.8 -6.1 acetolactate synthase III, large subunit compare
Atu8053 -0.8 -1.2 hypothetical protein compare
Atu4618 -0.8 -4.6 dTDP-rhamnose-3,5-epimerase compare
Atu4884 -0.8 -2.9 hypothetical protein compare
Atu6027 -0.8 -2.5 ABC transporter, substrate binding protein (nopaline) compare
Atu2017 -0.8 -0.9 hypothetical protein compare
Atu0662 -0.8 -2.7 transcriptional regulator, GntR family compare
Atu0846 -0.8 -2.7 transcriptional regulator, MarR family compare
Atu2183 -0.8 -3.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1844 -0.8 -2.7 Phosphoribosylformylglycinamidine synthetase compare
Atu2787 -0.8 -0.8 hypothetical protein compare
Atu5504 -0.8 -2.1 hypothetical protein compare
Atu2335 -0.8 -1.6 hypothetical protein compare
Atu6189 -0.8 -0.6 protein secretion chaperone compare
Atu5130 -0.8 -1.4 attachment protein compare
Atu2040 -0.8 -3.3 phosphoserine phosphatase compare
Atu5028 -0.8 -1.5 IS426 transposase compare
Atu0673 -0.8 -2.9 hypothetical protein compare
Atu3028 -0.8 -4.5 hypothetical protein compare
Atu2155 -0.8 -5.9 methionine synthase compare
Atu0537 -0.8 -3.6 histidinol dehydrogenase compare
Atu3963 -0.7 -4.7 GntR family transcriptional regulator compare
Atu0498 -0.7 -4.7 hypothetical protein compare
Atu4144 -0.7 -0.9 hypothetical protein compare
Atu1149 -0.7 -1.2 adenylate cyclase compare
Atu1714 -0.7 -1.2 exonuclease III compare
Atu8093 -0.7 -3.1 hypothetical protein compare
Atu0471 -0.7 -1.4 hypothetical protein compare
Atu0026 -0.7 -0.8 hypothetical protein compare
Atu1503 -0.7 -0.9 hypothetical protein compare
Atu4866 -0.7 -3.8 hypothetical protein compare
Atu5493 -0.7 -1.7 hypothetical protein compare
Atu3327 -0.7 -2.0 succinoglycan exopolysaccharide synthesis protein compare
Atu3712 -0.7 -1.2 hypothetical protein compare
Atu1462 -0.7 -4.5 glycine cleavage system protein P2 compare
Atu1466 -0.7 -1.3 hypothetical protein compare
Atu1810 -0.7 -0.7 hypothetical protein compare
Atu3485 -0.7 -4.7 short chain dehydrogenase compare
Atu2772 -0.7 -2.5 Invasion protein A compare
Atu1639 -0.7 -1.7 hypothetical protein compare
Atu2376 -0.7 -1.7 hypothetical protein compare
Atu0237 -0.7 -2.4 hypothetical protein compare
Atu6033 -0.7 -2.1 conjugal transfer protein compare
Atu3022 -0.7 -3.6 sugar ABC transporter permease compare
Atu1039 -0.7 -1.9 DNA repair protein RecO compare
Atu6108 -0.7 -1.2 alkylphosphonate uptake protein compare
Atu4616 -0.7 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu0577 -0.7 -1.9 FLAF protein compare
Atu2387 -0.7 -3.3 NTP pyrophosphohydrolase, MutT family compare
Atu3739 -0.7 -0.7 phosphoglycerate kinase compare
Atu1588 -0.7 -3.1 homoserine dehydrogenase compare
Atu4724 -0.7 -1.3 hypothetical protein compare
Atu1463 -0.6 -2.0 glycine cleavage system component H compare
Atu5015 -0.6 -2.6 phage-related integrase compare
Atu4869 -0.6 -2.0 hypothetical protein compare
Atu2235 -0.6 -1.7 hypothetical protein compare
Atu3023 -0.6 -3.7 sugar ABC transporter permease compare
Atu4865 -0.6 -4.2 oxidoreductase compare
Atu6145 -0.6 -2.5 arabinose phosphate phosphatase compare
Atu3075 -0.6 -3.9 TetR family transcriptional regulator compare
Atu1339 -0.6 -1.2 ribonuclease E compare
Atu3461 -0.6 -1.6 GntR family transcriptional regulator compare
Atu2286 -0.6 -1.1 hypothetical protein compare
Atu0636 -0.6 -2.9 hypothetical protein compare
Atu1775 -0.6 -1.8 polyketide biosynthesis associated protein compare
Atu2207 -0.6 -2.1 two component sensor kinase compare
Atu5501 -0.6 -0.6 hypothetical protein compare
Atu5095 -0.6 -1.9 hypothetical protein compare
Atu2236 -0.6 -2.3 adenine phosphoribosyltransferase compare
Atu4458 -0.6 -1.9 hypothetical protein compare
Atu4867 -0.6 -3.8 hypothetical protein compare
Atu1445 -0.6 -2.3 two component sensor kinase compare
Atu2044 -0.6 -3.4 HFLC protein compare
Atu3015 -0.6 -2.5 hypothetical protein compare
Atu5165 -0.6 -2.7 type IV secretion protein AvhB4 compare
Atu2481 -0.6 -2.6 lipase esterase compare
Atu0536 -0.6 -1.9 hypothetical protein compare
Atu1464 -0.6 -2.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu1621 -0.6 -2.9 hypothetical protein compare
Atu1327 -0.6 -0.8 NADH-ubiquinone oxidoreductase compare
Atu4868 -0.6 -3.9 oxidoreductase compare
Atu0953 -0.6 -0.4 hypothetical protein compare
Atu2808 -0.6 -2.9 cobyric acid synthase compare
Atu0524 -0.6 -1.8 transcriptional regulator, LuxR family compare
Atu4854 -0.6 -3.1 hypothetical protein compare
Atu3496 -0.6 -2.2 hypothetical protein compare
Atu6081 -0.6 -2.3 conserved hypothetical protein compare
Atu4873 -0.6 -3.6 TetR family transcriptional regulator compare
Atu1766 -0.6 -1.7 hypothetical protein compare
Atu2442 -0.6 -1.1 hypothetical protein compare
Atu3177 -0.6 -2.2 ribonuclease H compare
Atu3024 -0.6 -3.9 sugar ABC transporter permease compare
Atu3016 -0.6 -1.7 phosphoglyceromutase compare
Atu0976 -0.6 -1.2 cycL protein compare
Atu6045 -0.5 -0.4 replication protein C compare
Atu0770 -0.5 -2.3 cytochrome C oxidase assembly protein compare
Atu2692 -0.5 -1.6 intracellular septation protein compare


Specific Phenotypes

For 13 genes in this experiment

For nitrogen source Orotic acid in Agrobacterium fabrum C58

For nitrogen source Orotic acid across organisms