Experiment set3IT091 for Pseudomonas putida KT2440

Compare to:

LB with Cholinium dihydrogen phosphate 10 vol%

200 most important genes:

  gene name fitness t score description  
PP_4723 -3.3 -11.7 Carbamoyl-phosphate synthase large chain compare
PP_4724 -3.3 -6.9 Carbamoyl-phosphate synthase small chain compare
PP_5329 -2.5 -5.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1733 -2.3 -3.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_4999 -2.3 -2.1 dihydroorotase-like protein compare
PP_0164 -2.2 -8.4 conserved protein of unknown function compare
PP_0888 -2.1 -2.8 Photosynthetic apparatus regulatory protein RegA compare
PP_3241 -2.1 -2.1 conserved exported protein of unknown function compare
PP_0691 -1.9 -3.5 Glutamate 5-kinase compare
PP_1468 -1.8 -2.3 Tyrosine recombinase XerD compare
PP_5706 -1.8 -2.6 Sec translocation complex - SecG subunit compare
PP_1783 -1.7 -1.2 dTDP-glucose pyrophosphorylase compare
PP_1994 -1.7 -2.8 tRNA pseudouridine (38-40)synthase compare
PP_3821 -1.6 -8.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4342 -1.6 -3.7 flagellar synthesis regulator, putative ATPase compare
PP_2378 -1.5 -2.7 Fe/S biogenesis protein NfuA compare
PP_4129 -1.5 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5309 -1.5 -3.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0719 -1.5 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3649 -1.4 -4.0 Transcriptional regulator, GntR family compare
PP_0913 -1.4 -6.2 conserved exported protein of unknown function compare
PP_4124 -1.4 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_4701 -1.4 -1.6 glucose-6-phosphate isomerase compare
PP_1078 -1.4 -5.6 putative ABC transporter, ATP-binding protein compare
PP_1428 -1.3 -2.5 Sigma factor AlgU negative regulatory protein compare
PP_4964 -1.3 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_4120 -1.3 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_1366 -1.3 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4882 -1.2 -8.1 Iron ABC transporter, permease protein compare
PP_4881 -1.2 -8.6 putative Iron ABC transporter, periplasmic iron-binding protein compare
PP_4943 -1.2 -1.9 putative Glycosyl transferase compare
PP_1216 -1.2 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4004 -1.2 -3.7 DNA translocase FtsK compare
PP_4199 -1.2 -1.5 putative Lipoprotein compare
PP_0910 -1.1 -5.9 conserved exported protein of unknown function compare
PP_4700 -1.1 -0.7 pantothenate synthetase compare
PP_1734 -1.1 -2.8 Probable septum site-determining protein MinC compare
PP_0846 -1.1 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_5338 -1.1 -2.3 aspartate ammonia-lyase compare
PP_2000 -1.1 -2.5 amidophosphoribosyl transferase compare
PP_4131 -1.1 -3.6 NADH-quinone oxidoreductase subunit N compare
PP_0022 -1.1 -1.4 hypothetical protein compare
PP_4136 -1.1 -1.2 Transcriptional regulator, LuxR family compare
PP_2336 -1.0 -2.8 aconitate hydratase 1 compare
PP_0872 -1.0 -4.8 Peptide chain release factor 3 compare
PP_4993 -1.0 -3.0 Glutathione synthetase compare
PP_4880 -1.0 -5.9 exoribonuclease R compare
PP_0908 -1.0 -4.6 conserved exported protein of unknown function compare
PP_5095 -1.0 -1.3 pyrroline-5-carboxylate reductase compare
PP_4121 -1.0 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_1629 -1.0 -4.0 Protein RecA compare
PP_2402 -1.0 -1.8 putative Sensor histidine kinase compare
PP_1439 -1.0 -1.9 conserved exported protein of unknown function compare
PP_0111 -0.9 -5.5 Electron transport protein SCO1/SenC compare
PP_0856 -0.9 -2.5 conserved lipoprotein of unknown function compare
PP_0246 -0.9 -1.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_0339 -0.9 -3.0 Pyruvate dehydrogenase E1 component compare
PP_1190 -0.9 -2.8 conserved protein of unknown function compare
PP_0852 -0.9 -2.6 Transcriptional regulator, Cro/CI family compare
PP_5705 -0.9 -1.6 protein of unknown function compare
PP_4836 -0.9 -2.8 conserved exported protein of unknown function compare
PP_4546 -0.9 -3.0 ATP-dependent helicase HrpA compare
PP_0123 -0.9 -4.9 DNA polymerase I, 5 compare
PP_0504 -0.9 -4.9 Outer membrane protein OprG compare
PP_5441 -0.9 -2.9 protein of unknown function compare
PP_1269 -0.9 -1.3 Universal stress protein family compare
PP_5093 -0.9 -1.7 twitching motility protein compare
PP_0025 -0.8 -1.3 hypothetical protein compare
PP_5701 -0.8 -1.5 conserved protein of unknown function compare
PP_5328 -0.8 -2.6 putative phosphate transport system permease protein compare
PP_2144 -0.8 -2.2 Transcriptional regulator, TetR family compare
PP_5337 -0.8 -3.5 LysR family transcriptional regulator compare
PP_1892 -0.8 -2.1 conserved protein of unknown function compare
PP_0909 -0.8 -4.4 conserved exported protein of unknown function compare
PP_5594 -0.8 -1.0 conserved protein of unknown function compare
PP_1034 -0.8 -5.6 multicopper oxidase compare
PP_4942 -0.8 -1.9 conserved protein of unknown function compare
PP_4895 -0.8 -2.1 tRNA dimethylallyltransferase compare
PP_4470 -0.8 -2.0 putative transcriptional regulator (Arc domain-containing) compare
PP_4301 -0.8 -1.8 Pyruvate kinase compare
PP_5640 -0.8 -2.7 conserved protein of unknown function compare
PP_1215 -0.8 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_5331 -0.8 -2.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4519 -0.8 -5.5 Agglutination protein compare
PP_0959 -0.8 -1.8 phospholipid ABC transporter compare
PP_1217 -0.8 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1128 -0.8 -2.1 OmpA family protein compare
PP_1004 -0.8 -2.6 conserved protein of unknown function compare
PP_4264 -0.8 -3.8 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_0165 -0.8 -5.8 GGDEF domain protein compare
PP_2740 -0.7 -1.9 Transcriptional regulator, MerR family compare
PP_4265 -0.7 -2.2 DNA-binding transcriptional dual regulator compare
PP_3312 -0.7 -1.5 putative Heat shock protein compare
PP_0794 -0.7 -1.9 1-phosphofructokinase monomer compare
PP_4343 -0.7 -3.0 Flagellar biosynthesis protein FlhF compare
PP_2403 -0.7 -1.1 Chemotaxis protein CheY compare
PP_4262 -0.7 -2.0 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2302 -0.7 -2.9 DNA-binding, ATP-dependent protease compare
PP_1430 -0.7 -4.2 putative periplasmic serine endoprotease DegP-like compare
PP_4204 -0.7 -2.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1935 -0.7 -1.6 Transcriptional regulator, Cro/CI family compare
PP_0166 -0.7 -5.2 HlyD family secretion protein compare
PP_4662 -0.7 -2.3 conserved protein of unknown function compare
PP_1834 -0.7 -2.0 conserved protein of unknown function compare
PP_3903 -0.7 -1.6 conserved protein of unknown function compare
PP_2958 -0.7 -2.6 Glutaredoxin compare
PP_0672 -0.7 -5.7 Sensory box protein compare
PP_1038 -0.7 -1.2 conserved protein of unknown function compare
PP_4722 -0.7 -2.9 Transcription elongation factor GreA compare
PP_4793 -0.7 -2.0 conserved protein of unknown function compare
PP_2160 -0.7 -2.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2693 -0.7 -2.9 putative Dipeptidase compare
PP_2070 -0.7 -1.5 Transcriptional regulator, AraC family compare
PP_0167 -0.7 -5.6 Toxin secretion ATP-binding protein compare
PP_2675 -0.7 -2.4 Cytochrome c-type protein compare
PP_1344 -0.7 -0.7 conserved protein of unknown function compare
PP_5393 -0.7 -0.8 putative metal-binding chaperone compare
PP_1697 -0.7 -1.7 transcriptional regulator, GntR family compare
PP_3014 -0.7 -1.9 conserved exported protein of unknown function compare
PP_4944 -0.6 -2.6 Carbamoyltransferase compare
PP_5248 -0.6 -1.2 putative hydrolase compare
PP_4787 -0.6 -1.7 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1490 -0.6 -4.7 Probable biofilm formation methyltransferase WspC compare
PP_3204 -0.6 -1.5 conserved protein of unknown function compare
PP_1489 -0.6 -2.3 CheW domain protein compare
PP_3447 -0.6 -1.1 conserved membrane protein of unknown function compare
PP_1876 -0.6 -2.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0063 -0.6 -2.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5227 -0.6 -3.3 diaminopimelate decarboxylase compare
PP_5327 -0.6 -3.2 putative phosphate ABC transporter, permease subunit compare
PP_3823 -0.6 -2.9 Cytochrome c-type protein compare
PP_2547 -0.6 -1.4 Transcriptional regulator, LysR family compare
PP_5240 -0.6 -1.5 Response regulator compare
PP_0855 -0.6 -1.7 conserved protein of unknown function compare
PP_5352 -0.6 -4.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0168 -0.6 -5.5 putative surface adhesion protein compare
PP_3880 -0.6 -1.1 conserved exported protein of unknown function compare
PP_0007 -0.6 -2.0 conserved hypothetical protein compare
PP_1214 -0.6 -0.8 putative transcriptional regulatory protein compare
PP_1211 -0.6 -2.4 conserved protein of unknown function compare
PP_1233 -0.6 -2.8 sulfurtransferase compare
PP_4937 -0.6 -2.1 toluene tolerance protein compare
PP_5028 -0.6 -1.6 proline iminopeptidase compare
PP_3248 -0.6 -1.8 Dyp-type peroxidase family protein compare
PP_3539 -0.6 -1.3 putative Transcriptional regulator compare
PP_3563 -0.6 -2.1 conserved exported protein of unknown function compare
PP_3102 -0.6 -2.2 conserved protein of unknown function compare
PP_2171 -0.6 -2.5 Transporter, LysE family compare
PP_5480 -0.6 -2.1 conserved exported protein of unknown function compare
PP_5216 -0.6 -1.5 exopolyphosphatase compare
PP_0278 -0.6 -2.1 conserved protein of unknown function compare
PP_1512 -0.6 -1.3 conserved protein of unknown function compare
PP_1293 -0.6 -1.1 molybdopterin synthase small subunit compare
PP_5230 -0.6 -1.6 Tyrosine recombinase XerC compare
PP_5027 -0.6 -1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1122 -0.6 -0.7 OmpA family protein compare
PP_5714 -0.6 -2.3 conserved protein of unknown function compare
PP_1494 -0.6 -2.8 Response regulator/GGDEF domain protein compare
PP_3597 -0.6 -2.3 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_0435 -0.6 -4.0 Peptidase, M23/M37 family compare
PP_5217 -0.6 -4.7 Polyphosphate kinase compare
PP_0361 -0.5 -2.0 putative Competence protein ComF compare
PP_4122 -0.5 -0.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5725 -0.5 -2.2 protein of unknown function compare
PP_3487 -0.5 -1.2 conserved exported protein of unknown function compare
PP_3892 -0.5 -0.9 conserved protein of unknown function compare
PP_2023 -0.5 -1.6 Glutathione S-transferase family protein compare
PP_4054 -0.5 -1.7 conserved protein of unknown function compare
PP_5113 -0.5 -2.9 predicted Zn-dependent peptidases compare
PP_2575 -0.5 -1.3 conserved exported protein of unknown function compare
PP_2681 -0.5 -1.3 coenzyme PQQ synthesis protein D compare
PP_4555 -0.5 -1.7 conserved protein of unknown function compare
PP_5232 -0.5 -0.9 conserved protein of unknown function compare
PP_0833 -0.5 -1.1 queuine tRNA-ribosyltransferase compare
PP_2210 -0.5 -1.8 LysR family transcriptional regulator compare
PP_1817 -0.5 -2.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0173 -0.5 -2.9 putative transcriptional factor-related protein compare
PP_4354 -0.5 -1.7 flagellar export apparatus subunit compare
PP_2550 -0.5 -1.8 putative transcriptional regulatory protein compare
PP_3506 -0.5 -2.3 Magnesium chelatase, subunit ChII compare
PP_1045 -0.5 -1.1 Type II secretion pathway protein XcpP compare
PP_4988 -0.5 -2.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1832 -0.5 -2.4 putative Oxidase compare
PP_0850 -0.5 -2.5 Dual-specificity RNA methyltransferase RlmN compare
PP_2759 -0.5 -1.1 ribose ABC transporter - ATP-binding subunit compare
PP_1488 -0.5 -3.6 Methyl-accepting chemotaxis transducer compare
PP_2256 -0.5 -2.3 Transcriptional regulator, Cro/CI family compare
PP_3211 -0.5 -1.8 ABC transporter, ATP-binding protein compare
PP_1778 -0.5 -1.8 Lipopolysaccharide ABC export system, permease protein compare
PP_2720 -0.5 -0.9 conserved protein of unknown function compare
PP_4263 -0.5 -2.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5283 -0.5 -3.0 periplasmic dipeptide transport protein compare
PP_5063 -0.5 -1.8 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_4373 -0.5 -3.3 Transcriptional regulator FleQ compare
PP_2883 -0.5 -1.4 conserved protein of unknown function compare
PP_5053 -0.5 -2.1 Protein-export protein SecB compare
PP_5156 -0.5 -1.7 conserved exported protein of unknown function compare
PP_0963 -0.5 -1.2 putative BolA family protein compare
PP_2110 -0.5 -2.1 putative ribosomal large subunit pseudouridine synthase compare
PP_0232 -0.5 -0.8 ATP-binding taurine transporter subunit compare


Specific Phenotypes

For 3 genes in this experiment

For stress Cholinium dihydrogen phosphate in Pseudomonas putida KT2440

For stress Cholinium dihydrogen phosphate across organisms