Experiment set3IT091 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6C2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF2808 -4.2 -9.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF2213 -4.2 -5.9 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF236 -3.5 -1.8 FIG00545237: hypothetical protein compare
GFF20 -3.4 -9.7 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF1830 -2.9 -14.3 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF1832 -2.9 -12.7 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF2047 -2.3 -10.0 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF1634 -2.3 -3.7 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF4653 -2.2 -4.5 TolA protein compare
GFF2436 -2.1 -3.9 Iron-sulfur cluster regulator IscR compare
GFF2392 -1.9 -2.8 Peptide deformylase (EC 3.5.1.88) compare
GFF2845 -1.9 -5.5 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF384 -1.8 -3.5 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF1440 -1.5 -10.2 FIG00638940: hypothetical protein compare
GFF4145 -1.5 -1.9 hypothetical protein compare
GFF2758 -1.5 -1.9 FIG01045187: hypothetical protein compare
GFF121 -1.5 -4.1 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF4175 -1.5 -3.4 Uncharacterized protein YfiR precursor compare
GFF4624 -1.4 -1.4 Putative glycosyl transferase compare
GFF2537 -1.4 -2.0 hypothetical protein compare
GFF188 -1.3 -5.3 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF1411 -1.3 -5.6 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF2409 -1.3 -4.7 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF1641 -1.3 -1.6 hypothetical protein compare
GFF110 -1.2 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF3830 -1.2 -1.0 Uncharacterized protein YehA precursor compare
GFF1503 -1.2 -4.9 Lipoprotein nlpI precursor compare
GFF4652 -1.2 -3.3 Tol biopolymer transport system, TolR protein compare
GFF1348 -1.2 -1.7 FIG01046723: hypothetical protein compare
GFF1221 -1.1 -1.6 hypothetical protein compare
GFF2907 -1.1 -5.1 HTH-type transcriptional regulator hdfR compare
GFF1334 -1.1 -1.2 Uncharacterized protein YohL compare
GFF4008 -1.1 -2.0 Flagellar biosynthesis protein FliP compare
GFF4655 -1.0 -2.5 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1554 -1.0 -2.7 Putative transcriptional regulator compare
GFF4020 -1.0 -2.8 Flagellar hook-basal body complex protein FliE compare
GFF261 -1.0 -1.6 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes compare
GFF2573 -1.0 -2.8 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF2031 -1.0 -1.4 FIG01046611: hypothetical protein compare
GFF1219 -1.0 -1.8 FIG01048676: hypothetical protein compare
GFF3229 -1.0 -1.2 Secreted effector protein compare
GFF1234 -1.0 -1.5 hypothetical protein compare
GFF4354 -1.0 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF3324 -1.0 -1.0 putative periplasmic protein compare
GFF3355 -0.9 -3.2 Flagellar basal-body rod protein FlgC compare
GFF4615 -0.9 -1.2 FIG137478: Hypothetical protein YbgI compare
GFF115 -0.9 -3.2 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF4598 -0.9 -1.6 Uncharacterized protein ybfE compare
GFF3722 -0.9 -1.2 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF518 -0.9 -1.3 rRNA small subunit methyltransferase J compare
GFF2555 -0.9 -2.3 Stationary-phase-induced ribosome-associated protein compare
GFF4355 -0.9 -1.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF603 -0.9 -2.5 NfuA Fe-S protein maturation compare
GFF629 -0.9 -0.9 Shikimate kinase I (EC 2.7.1.71) compare
GFF3315 -0.9 -1.3 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF4772 -0.9 -1.1 hypothetical protein compare
GFF2948 -0.9 -2.5 PTS system nitrogen-specific IIA component, PtsN compare
GFF3450 -0.9 -2.1 Transcriptional regulator, MerR family compare
GFF4353 -0.9 -2.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF1497 -0.9 -1.3 Transcription termination protein NusA compare
GFF4322 -0.9 -2.8 Phosphatidylglycerophosphatase A (EC 3.1.3.27) compare
GFF1303 -0.9 -0.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF1088 -0.9 -0.8 FIG01045785: hypothetical protein compare
GFF1806 -0.9 -1.9 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF1947 -0.9 -2.1 Putative transporting ATPase compare
GFF3362 -0.8 -2.6 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF3502 -0.8 -0.8 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF4096 -0.8 -1.2 FIG01047254: hypothetical protein compare
GFF3618 -0.8 -4.1 Purine nucleotide synthesis repressor compare
GFF1451 -0.8 -2.0 Putative membrane protein, clustering with ActP compare
GFF3417 -0.8 -3.0 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
GFF2413 -0.8 -2.0 FIG021952: putative membrane protein compare
GFF4575 -0.8 -3.3 Magnesium and cobalt efflux protein CorC compare
GFF1808 -0.8 -3.0 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF2733 -0.8 -2.0 Membrane protein YciC, linked to IspA compare
GFF4611 -0.8 -2.6 FIG01200701: possible membrane protein compare
GFF2864 -0.8 -1.3 Mobile element protein compare
GFF2154 -0.8 -1.9 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF4766 -0.8 -1.0 Invasion protein invH precursor compare
GFF133 -0.8 -2.7 Type IV fimbrial assembly protein PilC compare
GFF1259 -0.8 -2.9 Error-prone repair protein UmuD compare
GFF1865 -0.8 -1.6 Polymyxin resistance protein PmrD compare
GFF778 -0.8 -1.0 Mobile element protein compare
GFF55 -0.8 -4.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF3975 -0.8 -0.6 hypothetical protein compare
GFF2669 -0.8 -2.1 Putative outer membrane lipoprotein compare
GFF3576 -0.8 -1.8 Tetrathionate reductase two-component response regulator compare
GFF1768 -0.8 -0.9 hypothetical protein compare
GFF734 -0.8 -1.1 putative cytoplasmic protein compare
GFF4770 -0.7 -1.2 transposase compare
GFF2518 -0.7 -3.0 Putative dehydrogenase protein compare
GFF2871 -0.7 -1.8 hypothetical protein compare
GFF192 -0.7 -3.3 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF1559 -0.7 -1.8 hypothetical protein compare
GFF3990 -0.7 -1.1 hypothetical protein compare
GFF3913 -0.7 -2.3 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
GFF2314 -0.7 -2.6 ATP-dependent protease HslV (EC 3.4.25.-) compare
GFF1408 -0.7 -2.7 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF3087 -0.7 -2.5 FIG074102: hypothetical protein compare
GFF3940 -0.7 -0.7 Propanediol utilization polyhedral body protein PduJ compare
GFF3635 -0.7 -2.1 Membrane-bound lysozyme inhibitor of c-type lysozyme compare
GFF2657 -0.7 -3.1 Universal stress protein E compare
GFF3621 -0.7 -2.2 Glutaredoxin-related protein compare
GFF3248 -0.7 -2.4 Outer membrane protein A precursor compare
GFF3907 -0.7 -1.8 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
GFF4055 -0.7 -2.0 Uncharacterized protein ImpB compare
GFF4537 -0.7 -1.5 CrcB protein compare
GFF2196 -0.7 -2.9 Transaldolase (EC 2.2.1.2) compare
GFF748 -0.7 -1.5 Protein ybjI compare
GFF2528 -0.7 -3.1 Hexuronate utilization operon transcriptional repressor ExuR compare
GFF633 -0.7 -2.4 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF2539 -0.7 -1.3 putative phage-related secreted protein compare
GFF4473 -0.7 -1.2 FIG01046818: hypothetical protein compare
GFF1109 -0.7 -1.6 Putative LysR family transcriptional regulator compare
GFF2148 -0.7 -2.1 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF2946 -0.7 -2.4 RNA polymerase sigma-54 factor RpoN compare
GFF338 -0.6 -4.1 Putative sensory transducer compare
GFF973 -0.6 -1.8 FIG074102: hypothetical protein compare
GFF796 -0.6 -2.0 Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-) compare
GFF122 -0.6 -3.4 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2592 -0.6 -1.3 secreted effector protein compare
GFF2389 -0.6 -1.2 Trk system potassium uptake protein TrkA compare
GFF2867 -0.6 -1.0 hypothetical protein compare
GFF1781 -0.6 -1.5 Putative binding-protein-dependent transport system compare
GFF739 -0.6 -1.6 Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) compare
GFF3749 -0.6 -1.8 Nucleoid-associated protein NdpA compare
GFF4822 -0.6 -1.8 Queuosine biosynthesis QueD, PTPS-I compare
GFF4387 -0.6 -1.7 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF2529 -0.6 -2.4 L-galactonate dehydrogenase (EC 1.1.1.-) compare
GFF3881 -0.6 -2.4 Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ compare
GFF1472 -0.6 -1.0 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF4233 -0.6 -0.9 Fimbrial protein precursor compare
GFF2248 -0.6 -1.5 FIG00642734: hypothetical protein compare
GFF3555 -0.6 -0.7 1,4-dihydroxy-2-naphthoyl-CoA hydrolase (EC 3.1.2.28) in menaquinone biosynthesis compare
GFF3603 -0.6 -0.9 Secretion system apparatus protein SsaM compare
GFF4774 -0.6 -0.9 FIG074102: hypothetical protein compare
GFF3357 -0.6 -3.3 Flagellar hook protein FlgE compare
GFF4128 -0.6 -2.0 hypothetical protein compare
GFF1343 -0.6 -0.7 Attachment invasion locus protein precursor compare
GFF1642 -0.6 -0.8 putative cytoplasmic protein compare
GFF1434 -0.6 -2.2 FIG00732228: membrane protein compare
GFF3558 -0.6 -1.3 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF3007 -0.6 -3.7 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) compare
GFF3460 -0.6 -1.7 Transglycosylase associated protein compare
GFF4797 -0.6 -2.0 Putative cytochrome oxidase subunit compare
GFF3886 -0.6 -3.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF1043 -0.6 -1.9 Deoxyribose-phosphate aldolase (EC 4.1.2.4) compare
GFF2655 -0.6 -1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
GFF3430 -0.6 -3.1 Periplasmic lysozyme inhibitor of c-type lysozyme compare
GFF4184 -0.6 -3.7 ClpB protein compare
GFF4861 -0.6 -1.6 L-fucose mutarotase compare
GFF1281 -0.6 -0.7 Head decoration protein compare
GFF3601 -0.6 -2.0 Type III secretion protein SsaK compare
GFF4865 -0.6 -2.8 Glycine cleavage system transcriptional activator GcvA compare
GFF3071 -0.6 -1.2 hypothetical protein compare
GFF1035 -0.6 -3.0 Peptide chain release factor 3 compare
GFF2690 -0.6 -1.2 Peptide transport system permease protein SapC compare
GFF4007 -0.6 -2.8 Flagellar biosynthesis protein FliQ compare
GFF2534 -0.6 -2.7 Transcriptional regulator, MarR family compare
GFF1621 -0.6 -0.9 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF1884 -0.6 -0.6 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF740 -0.6 -1.3 Putative LysR family transcriptional regulator compare
GFF4371 -0.6 -1.5 methylated-DNA--protein-cysteine methyltransferase-related protein compare
GFF339 -0.6 -2.9 YqeJ protein compare
GFF2516 -0.6 -3.1 Outer membrane protein C precursor compare
GFF1005 -0.6 -1.3 FIG00638610: hypothetical protein compare
GFF2433 -0.5 -1.7 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF1063 -0.5 -0.8 Phosphoglycerate mutase (EC 5.4.2.1) compare
GFF4234 -0.5 -1.0 Possible transmembrane regulator compare
GFF2036 -0.5 -2.1 Xanthosine phosphorylase (EC 2.4.2.1) compare
GFF945 -0.5 -1.2 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF1600 -0.5 -1.3 HAD-superfamily hydrolase, subfamily IA compare
GFF2833 -0.5 -1.1 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF3437 -0.5 -1.4 Putative outer membrane lipoprotein compare
GFF2338 -0.5 -2.6 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) compare
GFF2427 -0.5 -1.4 Protein SseB compare
GFF3931 -0.5 -2.5 Propanediol utilization polyhedral body protein PduT compare
GFF4755 -0.5 -1.8 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
GFF2119 -0.5 -1.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF407 -0.5 -1.8 hypothetical protein compare
GFF3154 -0.5 -1.0 Zinc transporter ZupT compare
GFF3358 -0.5 -1.5 Flagellar basal-body rod protein FlgF compare
GFF3354 -0.5 -2.4 Flagellar basal-body rod protein FlgB compare
GFF4061 -0.5 -0.6 putative periplasmic protein compare
GFF1195 -0.5 -1.9 hypothetical protein compare
GFF4601 -0.5 -2.4 Phosphoglucomutase (EC 5.4.2.2) compare
GFF395 -0.5 -4.0 Beta-1,3-galactosyltransferase / Beta-1,4-galactosyltransferase compare
GFF356 -0.5 -0.9 'tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34)' transl_table=11 compare
GFF3053 -0.5 -2.4 Twitching motility protein PilT compare
GFF1505 -0.5 -1.9 Tryptophan-specific transport protein compare
GFF979 -0.5 -2.4 Uxu operon transcriptional regulator compare
GFF1237 -0.5 -1.2 FIG01046247: hypothetical protein compare
GFF2991 -0.5 -1.2 Tyrosine recombinase XerD compare
GFF3580 -0.5 -2.2 Transcriptional regulator, MerR family, associated with photolyase compare
GFF2201 -0.5 -1.8 putative DNA-binding protein compare
GFF2753 -0.5 -2.7 Hnr protein compare
GFF4042 -0.5 -2.5 SAM-dependent methyltransferase YafE (UbiE paralog) compare
GFF1662 -0.5 -1.5 Chemotaxis response - phosphatase CheZ compare
GFF3360 -0.5 -1.9 Flagellar L-ring protein FlgH compare
GFF789 -0.5 -2.3 DNA primase (EC 2.7.7.-), phage-associated compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6C2_phage across organisms