Experiment set3IT090 for Agrobacterium fabrum C58

Compare to:

L-pyroglutamic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0038 -8.0 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1750 -7.7 -4.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu2289 -6.6 -18.7 anthranilate synthase component I and II compare
Atu3707 -6.4 -4.4 phosphoserine aminotransferase compare
Atu0537 -6.1 -4.2 histidinol dehydrogenase compare
Atu1688 -5.9 -5.8 indole-3-glycerol-phosphate synthase compare
Atu1620 -5.9 -14.4 triosephosphate isomerase compare
Atu0679 -5.9 -9.0 ATP phosphoribosyltransferase compare
Atu0017 -5.9 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2040 -5.9 -5.7 phosphoserine phosphatase compare
Atu3740 -5.4 -11.5 fructose bisphosphate aldolase compare
Atu2790 -5.4 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu0041 -5.3 -3.6 glutamine amidotransferase compare
Atu1687 -5.3 -11.5 anthranilate phosphoribosyltransferase compare
Atu4505 -5.3 -12.2 LacI family transcriptional regulator compare
Atu3706 -5.2 -11.1 D-3-phosphoglycerate dehydrogenase compare
Atu0099 -5.2 -14.9 prephenate dehydratase compare
Atu2650 -5.1 -14.0 glycerol-3-phosphate dehydrogenase compare
Atu1205 -5.1 -16.5 threonine dehydratase compare
Atu2264 -5.1 -13.3 2-isopropylmalate synthase compare
Atu0432 -5.0 -11.9 O-succinylhomoserine sulfhydrylase compare
Atu0035 -4.9 -12.0 phosphoenolpyruvate carboxykinase compare
Atu2709 -4.9 -20.1 3-isopropylmalate dehydratase, large subunit compare
Atu2718 -4.9 -10.4 homoserine O-succinyltransferase compare
Atu0678 -4.9 -8.7 histidyl-tRNA synthetase compare
Atu3739 -4.8 -3.9 phosphoglycerate kinase compare
Atu2036 -4.6 -17.5 acetolactate synthase III, large subunit compare
Atu0039 -4.6 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu1308 -4.4 -8.0 aspartate carbamoyl transferase catalytic subunit compare
Atu3910 -4.2 -9.6 LamB/YcsF family protein compare
Atu0769 -4.2 -4.1 protoheme IX farnesyltransferase compare
Atu3754 -4.2 -7.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2791 -4.2 -10.4 3-isopropylmalate dehydrogenase compare
Atu1030 -4.1 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0043 -4.1 -4.8 imidazoleglycerol-phosphate dehydratase compare
Atu1075 -4.0 -8.7 amidophosphoribosyltransferase compare
Atu1141 -4.0 -6.6 Phosphoribosylglycinamide synthetase compare
Atu2115 -3.9 -15.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1850 -3.9 -5.5 phosphoribosylformylglycinamidine synthetase II compare
Atu3885 -3.9 -7.5 inositol monophosphatase compare
Atu0298 -3.9 -9.0 orotidine 5 compare
Atu1588 -3.8 -10.5 homoserine dehydrogenase compare
Atu2428 -3.8 -12.2 exopolysaccharide production protein PssB compare
Atu1845 -3.7 -7.1 phosphoribosylformylglycinamidine synthase I compare
Atu1686 -3.6 -18.4 peptidyl-prolyl cis-trans isomerse D compare
Atu0486 -3.6 -6.6 dihydroorotate dehydrogenase compare
Atu2522 -3.6 -15.0 agrobacterium chromosomal virulence protein B compare
Atu3912 -3.5 -9.9 hypothetical protein compare
Atu1307 -3.5 -8.7 dihydroorotase compare
Atu0400 -3.5 -6.8 orotate phosphoribosyltransferase compare
Atu3913 -3.5 -11.3 biotin carboxylase compare
Atu0399 -3.5 -8.6 dihydroorotase compare
Atu3755 -3.4 -7.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3909 -3.4 -19.0 hypothetical protein compare
Atu1140 -3.4 -6.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0647 -3.3 -9.9 phosphoribosylamine--glycine ligase compare
Atu3469 -3.3 -4.4 phosphoglyceromutase compare
Atu2015 -3.2 -12.2 aminotransferase compare
Atu3911 -3.2 -7.2 hypothetical protein compare
Atu2728 -3.0 -6.7 beta (1-->2) glucan export ATP-binding protein compare
Atu0040 -3.0 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0346 -2.9 -5.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1359 -2.8 -2.0 dnaK deletion suppressor protein compare
Atu1685 -2.7 -1.9 hypothetical protein compare
Atu3482 -2.7 -12.5 pantoate--beta-alanine ligase compare
Atu8054 -2.6 -1.1 hypothetical protein compare
Atu0971 -2.6 -6.1 two component sensor kinase compare
Atu0422 -2.5 -4.0 ABC transporter, membrane spanning protein compare
Atu1844 -2.5 -2.8 Phosphoribosylformylglycinamidine synthetase compare
Atu4018 -2.5 -14.7 two component sensor kinase compare
Atu4096 -2.5 -8.8 nicotinate-nucleotide pyrophosphorylase compare
Atu4019 -2.5 -8.0 two component response regulator compare
Atu1456 -2.4 -11.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1589 -2.4 -8.5 aminotransferase, class I compare
Atu3483 -2.4 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2766 -2.3 -17.3 NAD-glutamate dehydrogenase compare
Atu0031 -2.3 -2.2 PTS system, IIA component compare
Atu3730 -2.2 -2.1 hypothetical protein compare
Atu4098 -2.1 -11.4 quinolinate synthetase compare
Atu2155 -2.1 -14.8 methionine synthase compare
Atu1454 -2.1 -7.6 siroheme synthase compare
Atu2548 -2.1 -13.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0977 -2.0 -3.4 serine protease DO-like protease compare
Atu2439 -1.9 -2.3 hypothetical protein compare
Atu2640 -1.8 -4.0 hypothetical protein compare
Atu1457 -1.8 -1.9 hypothetical protein compare
Atu0029 -1.8 -6.2 S-adenosylhomocysteine hydrolase compare
Atu3763 -1.8 -2.7 hypothetical protein compare
Atu1446 -1.7 -3.2 two component response regulator compare
Atu0086 -1.7 -1.9 ribosome-binding factor A compare
Atu4711 -1.7 -6.6 two component sensor kinase compare
Atu2163 -1.6 -2.3 hypothetical protein compare
Atu0421 -1.6 -2.0 ABC transporter, membrane spanning protein compare
Atu1748 -1.6 -7.4 NIFU-like protein compare
Atu3120 -1.5 -2.1 hypothetical protein compare
Atu1455 -1.5 -5.3 hypothetical protein compare
Atu0251 -1.5 -11.1 hypothetical protein compare
Atu2747 -1.4 -9.3 hypothetical protein compare
Atu1462 -1.4 -9.3 glycine cleavage system protein P2 compare
Atu3289 -1.4 -2.3 thiamine-phosphate pyrophosphorylase compare
Atu3731 -1.4 -5.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu0142 -1.4 -3.2 cytochrome o ubiquinol oxidase subunit II compare
Atu0792 -1.4 -5.0 hypothetical protein compare
Atu1463 -1.4 -7.5 glycine cleavage system component H compare
Atu1464 -1.4 -5.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu8115 -1.4 -4.6 Hypothetical Protein compare
Atu3290 -1.4 -6.8 phosphomethylpyrimidine kinase compare
Atu4166 -1.3 -2.7 UDP-glucose 4-epimerase compare
Atu3997 -1.3 -8.9 biotin synthetase compare
Atu0641 -1.3 -3.8 hypothetical protein compare
Atu0876 -1.3 -2.8 superoxide dismutase compare
Atu2123 -1.3 -5.2 methylenetetrahydrofolate reductase compare
Atu2569 -1.3 -7.7 thiamine biosynthesis protein compare
Atu0953 -1.2 -1.4 hypothetical protein compare
Atu4217 -1.2 -1.1 TetR family transcriptional regulator compare
Atu2376 -1.2 -1.1 hypothetical protein compare
Atu5106 -1.2 -1.6 DNA binding protein compare
Atu1810 -1.2 -1.6 hypothetical protein compare
Atu0051 -1.1 -5.2 two component sensor kinase compare
Atu0030 -1.1 -1.6 phosphocarrier protein HPr compare
Atu0999 -1.1 -6.3 magnesium transport protein compare
Atu4097 -1.1 -6.6 L-aspartate oxidase compare
Atu4290 -1.1 -1.5 hypothetical protein compare
Atu1445 -1.1 -3.7 two component sensor kinase compare
Atu0978 -1.1 -5.4 two component response regulator compare
Atu1774 -1.1 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu0723 -1.0 -1.4 FAD dependent oxidoreductase compare
Atu5475 -1.0 -1.6 hypothetical protein compare
Atu3288 -1.0 -4.2 hydroxyethylthiazole kinase compare
Atu0050 -1.0 -3.7 two component response regulator compare
Atu3727 -1.0 -3.9 hypothetical protein compare
Atu8162 -1.0 -0.9 hypothetical protein compare
Atu4616 -1.0 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu0434 -1.0 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1028 -0.9 -2.0 hypothetical protein compare
Atu2020 -0.9 -2.8 transcriptional regulator, TetR family compare
Atu6036 -0.9 -0.7 entry-exclusion protein compare
Atu2052 -0.9 -4.6 hypothetical protein compare
Atu4317 -0.9 -1.9 TetR family transcriptional regulator compare
Atu4173 -0.9 -2.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu2183 -0.9 -4.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1364 -0.9 -3.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu6165 -0.9 -0.7 hypothetical protein compare
Atu4773 -0.9 -1.7 two component response regulator compare
Atu2379 -0.9 -6.1 phosphomannomutase compare
Atu0332 -0.9 -4.2 RNA polymerase sigma-54 factor compare
Atu0979 -0.9 -4.8 two component sensor kinase compare
Atu4477 -0.9 -4.3 TetR family transcriptional regulator compare
Atu6114 -0.8 -0.8 hypothetical protein compare
Atu2684 -0.8 -1.6 hypothetical protein compare
Atu2067 -0.8 -0.9 hypothetical protein compare
Atu0190 -0.8 -4.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2425 -0.8 -5.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu4144 -0.8 -1.1 hypothetical protein compare
Atu0690 -0.8 -1.4 hypothetical protein compare
Atu8167 -0.8 -5.4 putative transmembrane protein compare
Atu2787 -0.7 -0.8 hypothetical protein compare
Atu2205 -0.7 -1.9 transcriptional regulator, MarR family compare
Atu2827 -0.7 -2.0 hypothetical protein compare
Atu1891 -0.7 -2.7 cobalamin biosynthesis protein compare
Atu4000 -0.7 -5.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3998 -0.7 -5.1 8-amino-7-oxononanoate synthase compare
Atu1444 -0.7 -2.5 nitrogen regulation protein compare
Atu8020 -0.7 -2.0 hypothetical protein compare
Atu4614 -0.7 -3.9 glycosyltransferase compare
Atu1573 -0.7 -1.3 hypothetical protein compare
Atu3518 -0.7 -4.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu4001 -0.7 -3.4 3-oxoacyl-ACP synthase compare
Atu5429 -0.7 -1.7 transcriptional regulator compare
Atu1754 -0.7 -0.8 hypothetical protein compare
Atu3999 -0.7 -1.5 dithiobiotin synthetase compare
Atu2442 -0.7 -2.2 hypothetical protein compare
Atu2127 -0.7 -4.0 L-carnitine dehydratase compare
Atu3121 -0.7 -1.2 cold shock protein compare
Atu1163 -0.7 -0.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1714 -0.7 -1.3 exonuclease III compare
Atu2426 -0.6 -4.1 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu5444 -0.6 -2.6 short-chain dehydrogenase compare
Atu0361 -0.6 -1.6 transcriptional regulator compare
Atu2017 -0.6 -0.9 hypothetical protein compare
Atu5034 -0.6 -1.0 hypothetical protein compare
Atu5026 -0.6 -2.8 hypothetical protein compare
Atu2722 -0.6 -3.1 porin compare
Atu0130 -0.6 -1.2 cytidine deaminase compare
Atu4617 -0.6 -4.0 dTDP-D-glucose-4,6-dehydratase compare
Atu5468 -0.6 -1.1 hypothetical protein compare
Atu5115 -0.6 -0.9 hypothetical protein compare
Atu6195 -0.6 -0.9 conserved hypothetical protein compare
Atu4618 -0.6 -4.4 dTDP-rhamnose-3,5-epimerase compare
Atu0141 -0.6 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu2209 -0.6 -1.5 pyrroline-5-carboxylate reductase compare
Atu4837 -0.6 -1.9 hypothetical protein compare
Atu2800 -0.6 -2.7 precorrin-3B C17-methyltransferase compare
Atu3353 -0.6 -3.3 mannose-1-phosphate guanylyltransferase compare
Atu2113 -0.6 -1.5 N-acetylmuramoyl-L-alanine amidase compare
Atu0189 -0.6 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu4613 -0.6 -4.5 glycosyltransferase compare
Atu5160 -0.6 -1.5 transcriptional regulator protein compare
Atu1737 -0.6 -1.7 hypothetical protein compare
Atu0837 -0.6 -2.4 transcriptional regulator, MarR family compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source L-Pyroglutamic acid in Agrobacterium fabrum C58

For nitrogen source L-Pyroglutamic acid across organisms