Experiment set3IT089 for Agrobacterium fabrum C58

Compare to:

L-Pipecolic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1750 -7.0 -6.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu2040 -6.6 -4.6 phosphoserine phosphatase compare
Atu0678 -6.0 -5.8 histidyl-tRNA synthetase compare
Atu2264 -5.9 -15.7 2-isopropylmalate synthase compare
Atu0486 -5.9 -8.0 dihydroorotate dehydrogenase compare
Atu3707 -5.6 -5.4 phosphoserine aminotransferase compare
Atu3739 -5.5 -2.9 phosphoglycerate kinase compare
Atu2790 -5.3 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu0679 -5.2 -9.4 ATP phosphoribosyltransferase compare
Atu2289 -5.1 -19.6 anthranilate synthase component I and II compare
Atu2791 -5.0 -10.8 3-isopropylmalate dehydrogenase compare
Atu3740 -4.9 -13.1 fructose bisphosphate aldolase compare
Atu2709 -4.7 -19.2 3-isopropylmalate dehydratase, large subunit compare
Atu0035 -4.6 -12.3 phosphoenolpyruvate carboxykinase compare
Atu1687 -4.6 -10.8 anthranilate phosphoribosyltransferase compare
Atu3469 -4.6 -4.4 phosphoglyceromutase compare
Atu4505 -4.6 -13.7 LacI family transcriptional regulator compare
Atu3706 -4.5 -11.1 D-3-phosphoglycerate dehydrogenase compare
Atu0039 -4.4 -3.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu0099 -4.4 -8.7 prephenate dehydratase compare
Atu0537 -4.3 -8.2 histidinol dehydrogenase compare
Atu2036 -4.2 -19.3 acetolactate synthase III, large subunit compare
Atu1845 -4.2 -6.0 phosphoribosylformylglycinamidine synthase I compare
Atu0017 -4.2 -5.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -4.2 -11.1 indole-3-glycerol-phosphate synthase compare
Atu0038 -4.0 -4.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1308 -3.9 -6.7 aspartate carbamoyl transferase catalytic subunit compare
Atu1844 -3.8 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu0399 -3.8 -8.8 dihydroorotase compare
Atu2650 -3.8 -15.2 glycerol-3-phosphate dehydrogenase compare
Atu0298 -3.7 -7.7 orotidine 5 compare
Atu1620 -3.7 -15.0 triosephosphate isomerase compare
Atu1140 -3.7 -5.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1075 -3.7 -7.8 amidophosphoribosyltransferase compare
Atu1850 -3.4 -5.4 phosphoribosylformylglycinamidine synthetase II compare
Atu0041 -3.4 -4.0 glutamine amidotransferase compare
Atu0400 -3.3 -7.6 orotate phosphoribosyltransferase compare
Atu1030 -3.3 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0043 -3.3 -2.9 imidazoleglycerol-phosphate dehydratase compare
Atu1205 -3.3 -15.0 threonine dehydratase compare
Atu0432 -3.3 -11.2 O-succinylhomoserine sulfhydrylase compare
Atu1141 -3.3 -9.3 Phosphoribosylglycinamide synthetase compare
Atu3754 -3.2 -11.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3885 -3.2 -8.4 inositol monophosphatase compare
Atu1588 -3.2 -13.0 homoserine dehydrogenase compare
Atu1307 -3.0 -7.3 dihydroorotase compare
Atu2718 -3.0 -9.9 homoserine O-succinyltransferase compare
Atu2684 -3.0 -3.2 hypothetical protein compare
Atu0346 -3.0 -4.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0030 -3.0 -2.4 phosphocarrier protein HPr compare
Atu0647 -2.9 -9.1 phosphoribosylamine--glycine ligase compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3482 -2.7 -9.3 pantoate--beta-alanine ligase compare
Atu1446 -2.7 -3.7 two component response regulator compare
Atu4153 -2.6 -12.9 aldehyde dehydrogenase conserved
Atu3731 -2.6 -9.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu3483 -2.5 -9.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2560 -2.5 -10.9 oxidoreductase conserved
Atu4711 -2.5 -8.1 two component sensor kinase compare
Atu4151 -2.4 -7.4 LysR family transcriptional regulator compare
Atu1359 -2.4 -1.9 dnaK deletion suppressor protein compare
Atu2127 -2.3 -8.6 L-carnitine dehydratase compare
Atu2155 -2.2 -14.0 methionine synthase compare
Atu0332 -2.2 -12.1 RNA polymerase sigma-54 factor compare
Atu0354 -2.1 -3.4 ferric uptake regulator compare
Atu4418 -2.1 -6.3 glutaryl-CoA dehydrogenase compare
Atu4674 -2.1 -9.3 GntR family transcriptional regulator compare
Atu3755 -2.0 -6.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4773 -1.9 -2.9 two component response regulator compare
Atu2128 -1.8 -9.7 acetolactate synthase large subunit compare
Atu4419 -1.8 -9.9 LysR family transcriptional regulator compare
Atu1463 -1.8 -7.3 glycine cleavage system component H compare
Atu1464 -1.8 -6.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu2115 -1.7 -10.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2559 -1.6 -8.1 transcriptional regulator, LysR family compare
Atu1462 -1.6 -10.0 glycine cleavage system protein P2 compare
Atu2769 -1.5 -10.3 acetyl-CoA acetyltransferase; poly-beta-hydroxybutyrate biosynthesis compare
Atu1445 -1.5 -4.3 two component sensor kinase compare
Atu0031 -1.5 -1.8 PTS system, IIA component compare
Atu0322 -1.4 -7.5 enoyl CoA hydratase compare
Atu3597 -1.4 -8.1 3-hydroxybutyryl-CoA dehydrogenase compare
Atu6098 -1.3 -0.7 transcriptional regulator, HTH family compare
Atu8054 -1.3 -0.7 hypothetical protein compare
Atu2640 -1.3 -4.9 hypothetical protein compare
Atu3293 -1.3 -5.7 D-amino acid dehydrogenase small subunit compare
Atu2084 -1.3 -1.1 hypothetical protein compare
Atu4166 -1.3 -3.1 UDP-glucose 4-epimerase compare
Atu4613 -1.2 -8.7 glycosyltransferase compare
Atu4477 -1.2 -7.1 TetR family transcriptional regulator compare
Atu2376 -1.2 -0.9 hypothetical protein compare
Atu1456 -1.2 -6.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu8056 -1.2 -1.4 hypothetical protein compare
Atu3861 -1.2 -4.7 acyl-CoA hydrolase compare
Atu5451 -1.2 -1.1 hypothetical protein compare
Atu2800 -1.1 -4.3 precorrin-3B C17-methyltransferase compare
Atu1589 -1.1 -4.5 aminotransferase, class I compare
Atu1149 -1.1 -1.6 adenylate cyclase compare
Atu8053 -1.1 -2.8 hypothetical protein compare
Atu0361 -1.1 -2.4 transcriptional regulator compare
Atu0434 -1.1 -2.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0422 -1.1 -1.9 ABC transporter, membrane spanning protein compare
Atu3290 -1.1 -6.7 phosphomethylpyrimidine kinase compare
Atu0029 -1.1 -5.1 S-adenosylhomocysteine hydrolase compare
Atu0536 -1.1 -6.0 hypothetical protein compare
Atu3289 -1.1 -3.4 thiamine-phosphate pyrophosphorylase compare
Atu4317 -1.0 -3.7 TetR family transcriptional regulator compare
Atu4616 -1.0 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu4173 -1.0 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu2747 -1.0 -6.4 hypothetical protein compare
Atu1457 -1.0 -2.0 hypothetical protein compare
Atu4077 -1.0 -6.4 glycogen branching protein compare
Atu0690 -1.0 -2.3 hypothetical protein compare
Atu2808 -1.0 -4.7 cobyric acid synthase compare
Atu1454 -1.0 -4.3 siroheme synthase compare
Atu2209 -1.0 -3.6 pyrroline-5-carboxylate reductase compare
Atu4618 -1.0 -7.2 dTDP-rhamnose-3,5-epimerase compare
Atu4617 -1.0 -5.2 dTDP-D-glucose-4,6-dehydratase compare
Atu1581 -1.0 -2.2 hypothetical protein compare
Atu4614 -0.9 -5.1 glycosyltransferase compare
Atu0807 -0.9 -3.5 metallo-beta-lactamase superfamily protein compare
Atu1891 -0.9 -2.5 cobalamin biosynthesis protein compare
Atu0894 -0.9 -1.9 ABC transporter, membrane spanning protein compare
Atu0803 -0.9 -7.0 pyruvate,orthophosphate dikinase compare
Atu0876 -0.9 -2.1 superoxide dismutase compare
Atu1774 -0.9 -4.5 ABC transporter, substrate binding protein (peptide) compare
Atu3288 -0.9 -3.5 hydroxyethylthiazole kinase compare
Atu2801 -0.9 -2.5 precorrin-2 C20 methyltransferase compare
Atu2442 -0.9 -2.3 hypothetical protein compare
Atu1455 -0.8 -2.0 hypothetical protein compare
Atu2809 -0.8 -4.4 cobalamin biosynthesis protein compare
Atu4615 -0.8 -5.6 glucose-1-phosphate thymidylyltransferase compare
Atu2802 -0.8 -4.4 precorrin-8X methylmutase compare
Atu2798 -0.8 -3.0 precorrin-6y methyltransferase compare
Atu1904 -0.8 -1.5 transcriptional regulator compare
Atu0837 -0.8 -2.9 transcriptional regulator, MarR family compare
Atu2796 -0.8 -3.8 precorrin-4 C11-methyltransferase compare
Atu6114 -0.8 -1.1 hypothetical protein compare
Atu2807 -0.8 -3.6 cob(I)alamin adenosyltransferase compare
Atu3908 -0.8 -4.8 GntR family transcriptional regulator compare
Atu2057 -0.8 -2.5 DNA helicase II compare
Atu2183 -0.8 -5.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2569 -0.8 -4.8 thiamine biosynthesis protein compare
Atu1604 -0.8 -5.6 poly-beta-hydroxybutyrate synthase compare
Atu4098 -0.7 -5.8 quinolinate synthetase compare
Atu8115 -0.7 -3.4 Hypothetical Protein compare
Atu0777 -0.7 -0.8 hypothetical protein compare
Atu4502 -0.7 -4.3 cobalamin synthesis protein compare
Atu3032 -0.7 -3.2 hypothetical protein compare
Atu2710 -0.7 -3.7 hypothetical protein compare
Atu1503 -0.7 -1.0 hypothetical protein compare
Atu2017 -0.7 -0.6 hypothetical protein compare
Atu2532 -0.7 -3.3 transcriptional regulator, MarR family compare
Atu4217 -0.7 -1.8 TetR family transcriptional regulator compare
Atu2795 -0.7 -3.7 cobalamin biosynthetic protein compare
Atu1714 -0.7 -1.3 exonuclease III compare
Atu5007 -0.7 -2.2 santhopine-responsive transcriptional repressor compare
Atu4837 -0.7 -3.8 hypothetical protein compare
Atu2163 -0.7 -1.3 hypothetical protein compare
Atu3712 -0.7 -1.3 hypothetical protein compare
Atu2554 -0.7 -1.5 lysyl-tRNA synthetase compare
Atu3759 -0.7 -1.3 hypothetical protein compare
Atu0189 -0.7 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu4873 -0.7 -3.3 TetR family transcriptional regulator compare
Atu2123 -0.6 -3.3 methylenetetrahydrofolate reductase compare
Atu4608 -0.6 -4.9 hypothetical protein compare
Atu2805 -0.6 -2.2 cobalamin synthesis protein compare
Atu4702 -0.6 -4.0 GntR family transcriptional regulator compare
Atu2239 -0.6 -2.9 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3120 -0.6 -1.0 hypothetical protein compare
Atu3486 -0.6 -2.0 DeoR family transcriptional regulator compare
Atu2425 -0.6 -4.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2804 -0.6 -4.6 cobaltochelatase subunit compare
Atu2427 -0.6 -3.9 ABC transporter, membrane spanning protein compare
Atu1439 -0.6 -1.7 hypothetical protein compare
Atu0654 -0.6 -2.7 transcriptional regulator, LysR family compare
Atu3075 -0.6 -3.5 TetR family transcriptional regulator compare
Atu0026 -0.6 -0.7 hypothetical protein compare
Atu2793 -0.6 -2.1 cobyrinic acid a,c-diamide synthase compare
Atu5125 -0.6 -1.6 GntR family transcriptional regulator compare
Atu4096 -0.6 -3.3 nicotinate-nucleotide pyrophosphorylase compare
Atu0331 -0.6 -1.9 sigma-54 modulation protein compare
Atu4685 -0.6 -3.4 LacI family transcriptional regulator compare
Atu1542 -0.6 -3.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1546 -0.6 -1.8 transcriptional regulator, MerR family compare
Atu5427 -0.6 -1.1 hypothetical protein compare
Atu2758 -0.6 -3.6 ammonium transporter compare
Atu4869 -0.6 -2.5 hypothetical protein compare
Atu2783 -0.6 -1.9 acetyltransferase compare
Atu0357 -0.6 -2.8 phosphate starvation inducible protein compare
Atu3353 -0.6 -4.0 mannose-1-phosphate guanylyltransferase compare
Atu2439 -0.6 -1.1 hypothetical protein compare
Atu3028 -0.6 -3.6 hypothetical protein compare
Atu3036 -0.6 -2.7 dipeptide ABC transporter permease compare
Atu2803 -0.6 -1.4 Cobalamin biosynthesis associated protein compare
Atu2424 -0.6 -2.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu0769 -0.6 -1.2 protoheme IX farnesyltransferase compare
Atu2827 -0.5 -1.6 hypothetical protein compare
Atu4232 -0.5 -3.2 GntR family transcriptional regulator compare
Atu2426 -0.5 -3.2 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu1686 -0.5 -4.2 peptidyl-prolyl cis-trans isomerse D compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source L-Pipecolic Acid in Agrobacterium fabrum C58

For nitrogen source L-Pipecolic Acid across organisms