Experiment set3IT088 for Agrobacterium fabrum C58

Compare to:

L-Pipecolic Acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1750 -9.3 -6.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu2040 -6.6 -4.5 phosphoserine phosphatase compare
Atu2264 -6.4 -13.7 2-isopropylmalate synthase compare
Atu0679 -6.3 -6.2 ATP phosphoribosyltransferase compare
Atu0678 -6.2 -4.3 histidyl-tRNA synthetase compare
Atu0017 -5.7 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3706 -5.6 -10.1 D-3-phosphoglycerate dehydrogenase compare
Atu3707 -5.5 -5.3 phosphoserine aminotransferase compare
Atu0099 -5.4 -15.1 prephenate dehydratase compare
Atu2790 -5.3 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu0043 -5.2 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu0035 -5.2 -12.3 phosphoenolpyruvate carboxykinase compare
Atu1030 -5.2 -3.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3740 -5.2 -12.9 fructose bisphosphate aldolase compare
Atu2709 -5.1 -21.0 3-isopropylmalate dehydratase, large subunit compare
Atu3469 -5.1 -3.5 phosphoglyceromutase compare
Atu1687 -5.0 -14.1 anthranilate phosphoribosyltransferase compare
Atu2036 -5.0 -19.6 acetolactate synthase III, large subunit compare
Atu1359 -5.0 -2.0 dnaK deletion suppressor protein compare
Atu2289 -4.9 -19.5 anthranilate synthase component I and II compare
Atu2791 -4.8 -8.8 3-isopropylmalate dehydrogenase compare
Atu0537 -4.8 -8.0 histidinol dehydrogenase compare
Atu1688 -4.6 -10.3 indole-3-glycerol-phosphate synthase compare
Atu0038 -4.6 -6.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4505 -4.4 -12.4 LacI family transcriptional regulator compare
Atu0399 -4.3 -9.9 dihydroorotase compare
Atu0041 -4.2 -4.1 glutamine amidotransferase compare
Atu0486 -4.2 -7.2 dihydroorotate dehydrogenase compare
Atu1308 -4.1 -7.6 aspartate carbamoyl transferase catalytic subunit compare
Atu2718 -4.1 -10.8 homoserine O-succinyltransferase compare
Atu0400 -4.0 -6.4 orotate phosphoribosyltransferase compare
Atu1075 -4.0 -8.1 amidophosphoribosyltransferase compare
Atu1307 -3.7 -8.5 dihydroorotase compare
Atu3739 -3.7 -4.5 phosphoglycerate kinase compare
Atu1205 -3.7 -12.1 threonine dehydratase compare
Atu2650 -3.7 -12.6 glycerol-3-phosphate dehydrogenase compare
Atu1141 -3.6 -10.2 Phosphoribosylglycinamide synthetase compare
Atu1140 -3.6 -8.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1446 -3.5 -4.4 two component response regulator compare
Atu1620 -3.4 -14.8 triosephosphate isomerase compare
Atu1845 -3.4 -5.9 phosphoribosylformylglycinamidine synthase I compare
Atu0432 -3.3 -9.9 O-succinylhomoserine sulfhydrylase compare
Atu0039 -3.3 -3.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu1844 -3.2 -5.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1850 -3.2 -3.2 phosphoribosylformylglycinamidine synthetase II compare
Atu1588 -3.1 -8.5 homoserine dehydrogenase compare
Atu0298 -3.1 -8.0 orotidine 5 compare
Atu3885 -3.0 -9.8 inositol monophosphatase compare
Atu3754 -3.0 -11.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0346 -3.0 -3.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4153 -2.9 -11.4 aldehyde dehydrogenase conserved
Atu3755 -2.9 -5.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0647 -2.8 -9.0 phosphoribosylamine--glycine ligase compare
Atu3482 -2.8 -9.7 pantoate--beta-alanine ligase compare
Atu3483 -2.7 -9.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu4711 -2.7 -9.2 two component sensor kinase compare
Atu2560 -2.5 -14.0 oxidoreductase conserved
Atu3731 -2.5 -9.6 5-formyltetrahydrofolate cyclo-ligase compare
Atu2155 -2.4 -18.3 methionine synthase compare
Atu6114 -2.3 -2.6 hypothetical protein compare
Atu0030 -2.3 -2.3 phosphocarrier protein HPr compare
Atu0332 -2.2 -9.8 RNA polymerase sigma-54 factor compare
Atu4674 -2.2 -11.6 GntR family transcriptional regulator compare
Atu1464 -2.2 -7.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu2127 -2.1 -10.4 L-carnitine dehydratase compare
Atu4419 -2.1 -9.8 LysR family transcriptional regulator compare
Atu2769 -1.9 -10.2 acetyl-CoA acetyltransferase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2128 -1.9 -10.6 acetolactate synthase large subunit compare
Atu4418 -1.8 -6.1 glutaryl-CoA dehydrogenase compare
Atu1462 -1.8 -10.3 glycine cleavage system protein P2 compare
Atu0769 -1.7 -2.5 protoheme IX farnesyltransferase compare
Atu2115 -1.7 -9.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4151 -1.7 -6.4 LysR family transcriptional regulator compare
Atu0422 -1.6 -3.0 ABC transporter, membrane spanning protein compare
Atu0029 -1.6 -5.5 S-adenosylhomocysteine hydrolase compare
Atu2559 -1.6 -8.8 transcriptional regulator, LysR family compare
Atu0322 -1.5 -5.3 enoyl CoA hydratase compare
Atu3597 -1.5 -7.2 3-hydroxybutyryl-CoA dehydrogenase compare
Atu4477 -1.4 -8.5 TetR family transcriptional regulator compare
Atu0536 -1.3 -5.1 hypothetical protein compare
Atu1589 -1.3 -4.5 aminotransferase, class I compare
Atu1463 -1.3 -3.8 glycine cleavage system component H compare
Atu1445 -1.3 -5.2 two component sensor kinase compare
Atu3468 -1.2 -1.2 hypothetical protein compare
Atu5475 -1.2 -1.9 hypothetical protein compare
Atu0031 -1.2 -1.5 PTS system, IIA component compare
Atu3293 -1.2 -5.5 D-amino acid dehydrogenase small subunit compare
Atu0807 -1.2 -6.0 metallo-beta-lactamase superfamily protein compare
Atu1994 -1.2 -4.1 acyl-CoA hydrolase compare
Atu4166 -1.2 -2.8 UDP-glucose 4-epimerase compare
Atu3290 -1.2 -6.2 phosphomethylpyrimidine kinase compare
Atu1456 -1.1 -7.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0040 -1.1 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0803 -1.1 -9.5 pyruvate,orthophosphate dikinase compare
Atu2640 -1.1 -3.9 hypothetical protein compare
Atu3288 -1.1 -4.9 hydroxyethylthiazole kinase compare
Atu2207 -1.0 -2.2 two component sensor kinase compare
Atu2796 -1.0 -6.7 precorrin-4 C11-methyltransferase compare
Atu4613 -1.0 -7.3 glycosyltransferase compare
Atu3861 -1.0 -5.3 acyl-CoA hydrolase compare
Atu4173 -1.0 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu4077 -1.0 -6.5 glycogen branching protein compare
Atu2554 -1.0 -2.1 lysyl-tRNA synthetase compare
Atu0876 -0.9 -1.1 superoxide dismutase compare
Atu0184 -0.9 -2.1 glucokinase compare
Atu0386 -0.9 -1.6 hypothetical protein compare
Atu4317 -0.9 -3.7 TetR family transcriptional regulator compare
Atu3289 -0.9 -2.3 thiamine-phosphate pyrophosphorylase compare
Atu1454 -0.9 -4.3 siroheme synthase compare
Atu2569 -0.9 -6.9 thiamine biosynthesis protein compare
Atu2067 -0.9 -0.9 hypothetical protein compare
Atu2205 -0.9 -4.3 transcriptional regulator, MarR family compare
Atu2798 -0.9 -3.1 precorrin-6y methyltransferase compare
Atu4096 -0.9 -5.0 nicotinate-nucleotide pyrophosphorylase compare
Atu4217 -0.9 -1.8 TetR family transcriptional regulator compare
Atu1810 -0.9 -1.4 hypothetical protein compare
Atu2123 -0.9 -3.4 methylenetetrahydrofolate reductase compare
Atu2427 -0.9 -5.6 ABC transporter, membrane spanning protein compare
Atu1629 -0.9 -1.2 transcriptional regulator, ArsR family compare
Atu3486 -0.9 -1.3 DeoR family transcriptional regulator compare
Atu2804 -0.8 -5.4 cobaltochelatase subunit compare
Atu3510 -0.8 -2.1 amidohydrolase compare
Atu8138 -0.8 -1.4 hypothetical protein compare
Atu2684 -0.8 -1.5 hypothetical protein compare
Atu4773 -0.8 -1.6 two component response regulator compare
Atu2747 -0.8 -5.5 hypothetical protein compare
Atu1604 -0.8 -5.8 poly-beta-hydroxybutyrate synthase compare
Atu1714 -0.8 -1.5 exonuclease III compare
Atu0025 -0.8 -1.4 hypothetical protein compare
Atu1219 -0.8 -0.8 hypothetical protein compare
Atu4098 -0.8 -5.8 quinolinate synthetase compare
Atu8054 -0.8 -0.5 hypothetical protein compare
Atu1503 -0.8 -1.1 hypothetical protein compare
Atu1354 -0.7 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu6189 -0.7 -0.9 protein secretion chaperone compare
Atu8115 -0.7 -3.6 Hypothetical Protein compare
Atu0690 -0.7 -2.4 hypothetical protein compare
Atu2807 -0.7 -3.6 cob(I)alamin adenosyltransferase compare
Atu0723 -0.7 -1.2 FAD dependent oxidoreductase compare
Atu2809 -0.7 -3.5 cobalamin biosynthesis protein compare
Atu0837 -0.7 -4.4 transcriptional regulator, MarR family compare
Atu2424 -0.7 -4.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu4097 -0.7 -4.2 L-aspartate oxidase compare
Atu5160 -0.7 -1.8 transcriptional regulator protein compare
Atu1455 -0.7 -1.7 hypothetical protein compare
Atu2433 -0.7 -1.1 hypothetical protein compare
Atu5186 -0.7 -1.4 hypothetical protein compare
Atu2808 -0.7 -4.2 cobyric acid synthase compare
Atu4615 -0.7 -3.6 glucose-1-phosphate thymidylyltransferase compare
Atu0011 -0.7 -3.0 transcriptional regulator compare
Atu1686 -0.7 -5.0 peptidyl-prolyl cis-trans isomerse D compare
Atu3291 -0.7 -3.1 Lpr family transcriptional regulator compare
Atu1774 -0.7 -3.7 ABC transporter, substrate binding protein (peptide) compare
Atu0972 -0.7 -3.3 lipA protein compare
Atu4144 -0.7 -1.0 hypothetical protein compare
Atu3763 -0.7 -1.1 hypothetical protein compare
Atu0291 -0.7 -3.4 hypothetical protein compare
Atu2432 -0.7 -1.7 hypothetical protein compare
Atu2710 -0.7 -4.2 hypothetical protein compare
Atu4618 -0.6 -4.6 dTDP-rhamnose-3,5-epimerase compare
Atu3287 -0.6 -2.6 thiamine biosynthesis associated protein compare
Atu3485 -0.6 -4.2 short chain dehydrogenase compare
Atu3908 -0.6 -4.5 GntR family transcriptional regulator compare
Atu1836 -0.6 -1.6 hypothetical protein compare
Atu3256 -0.6 -3.3 zinc-binding dehydrogenase compare
Atu8128 -0.6 -3.0 putative bacteriophage P2 tail protein compare
Atu1573 -0.6 -0.8 hypothetical protein compare
Atu5007 -0.6 -3.0 santhopine-responsive transcriptional repressor compare
Atu2057 -0.6 -2.0 DNA helicase II compare
Atu0340 -0.6 -1.1 SAM dependent methyltransferase compare
Atu0971 -0.6 -1.8 two component sensor kinase compare
Atu0357 -0.6 -3.7 phosphate starvation inducible protein compare
Atu2183 -0.6 -4.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4617 -0.6 -4.7 dTDP-D-glucose-4,6-dehydratase compare
Atu2795 -0.6 -3.0 cobalamin biosynthetic protein compare
Atu0361 -0.6 -1.0 transcriptional regulator compare
Atu0846 -0.6 -1.6 transcriptional regulator, MarR family compare
Atu0943 -0.6 -1.4 hypothetical protein compare
Atu0654 -0.6 -3.6 transcriptional regulator, LysR family compare
Atu1546 -0.6 -2.3 transcriptional regulator, MerR family compare
Atu2802 -0.6 -4.0 precorrin-8X methylmutase compare
Atu4702 -0.6 -2.5 GntR family transcriptional regulator compare
Atu0377 -0.6 -2.8 hypothetical protein compare
Atu2634 -0.6 -1.3 hypothetical protein compare
Atu3031 -0.6 -1.0 hypothetical protein compare
Atu2800 -0.6 -2.4 precorrin-3B C17-methyltransferase compare
Atu2772 -0.6 -2.6 Invasion protein A compare
Atu0463 -0.6 -2.5 hypothetical protein compare
Atu3075 -0.6 -3.1 TetR family transcriptional regulator compare
Atu0331 -0.6 -1.4 sigma-54 modulation protein compare
Atu5124 -0.6 -4.2 glutamate-1-semialdehyde aminotransferase compare
Atu2376 -0.6 -0.4 hypothetical protein compare
Atu1642 -0.6 -1.5 hypothetical protein compare
Atu3912 -0.6 -3.8 hypothetical protein compare
Atu2803 -0.6 -2.1 Cobalamin biosynthesis associated protein compare
Atu6156 -0.6 -2.2 virA/G regulated gene compare
Atu2770 -0.6 -3.5 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu5125 -0.6 -2.1 GntR family transcriptional regulator compare
Atu2801 -0.6 -2.2 precorrin-2 C20 methyltransferase compare
Atu2793 -0.6 -2.2 cobyrinic acid a,c-diamide synthase compare


Specific Phenotypes

For 11 genes in this experiment

For nitrogen source L-Pipecolic Acid in Agrobacterium fabrum C58

For nitrogen source L-Pipecolic Acid across organisms