Experiment set3IT087 for Pseudomonas putida KT2440

Compare to:

LB with 2-Piperidinone 3 vol%

200 most important genes:

  gene name fitness t score description  
PP_0833 -3.1 -3.0 queuine tRNA-ribosyltransferase compare
PP_0164 -3.0 -9.2 conserved protein of unknown function compare
PP_4880 -2.5 -10.4 exoribonuclease R compare
PP_5328 -2.4 -4.2 putative phosphate transport system permease protein compare
PP_2341 -2.3 -2.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5329 -2.2 -5.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2414 -2.2 -3.9 conserved exported protein of unknown function compare
PP_4804 -2.1 -3.5 RlpA-like lipoprotein compare
PP_5095 -2.1 -2.4 pyrroline-5-carboxylate reductase compare
PP_0218 -2.0 -8.9 Sensory box protein compare
PP_0719 -2.0 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0834 -1.9 -3.3 Sec translocation complex subunit YajC compare
PP_4342 -1.8 -4.5 flagellar synthesis regulator, putative ATPase compare
PP_2136 -1.7 -3.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2378 -1.7 -2.5 Fe/S biogenesis protein NfuA compare
PP_2681 -1.6 -2.1 coenzyme PQQ synthesis protein D compare
PP_0691 -1.6 -3.6 Glutamate 5-kinase compare
PP_4937 -1.5 -3.6 toluene tolerance protein compare
PP_1237 -1.5 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5327 -1.5 -4.7 putative phosphate ABC transporter, permease subunit compare
PP_t29 -1.5 -2.1 tRNA-Ala compare
PP_3903 -1.4 -1.4 conserved protein of unknown function compare
PP_0063 -1.4 -4.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0339 -1.3 -4.2 Pyruvate dehydrogenase E1 component compare
PP_4129 -1.3 -3.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4236 -1.3 -5.1 putative Thiol:disulfide interchange protein dsbE compare
PP_4268 -1.3 -1.7 nucleoid-associated broad specificity regulator compare
PP_3098 -1.3 -1.9 conserved protein of unknown function compare
PP_3505 -1.2 -2.1 conserved protein of unknown function compare
PP_4910 -1.2 -1.9 conserved protein of unknown function compare
PP_0888 -1.2 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2499 -1.2 -1.4 conserved protein of unknown function compare
PP_4098 -1.2 -1.5 UvrABC system protein C compare
PP_2307 -1.2 -2.7 conserved protein of unknown function compare
PP_2121 -1.2 -2.5 putative Lipoprotein compare
PP_0345 -1.2 -2.9 putative Heptose kinase WapP compare
PP_4944 -1.1 -3.1 Carbamoyltransferase compare
PP_5146 -1.1 -6.5 RNA pyrophosphohydrolase compare
PP_1468 -1.1 -2.1 Tyrosine recombinase XerD compare
PP_4697 -1.1 -3.1 poly(A) polymerase compare
PP_2309 -1.1 -1.6 conserved protein of unknown function compare
PP_3539 -1.1 -2.2 putative Transcriptional regulator compare
PP_0393 -1.1 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1733 -1.1 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4993 -1.1 -3.4 Glutathione synthetase compare
PP_1215 -1.1 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4126 -1.1 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_4964 -1.1 -3.0 D-erythrose 4-phosphate dehydrogenase compare
PP_4961 -1.1 -2.4 putative Lipoprotein compare
PP_4936 -1.1 -4.3 O-antigen polymerase compare
PP_1214 -1.0 -2.0 putative transcriptional regulatory protein compare
PP_1679 -1.0 -3.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2442 -1.0 -1.8 conserved protein of unknown function, DUF480 family compare
PP_4943 -1.0 -1.5 putative Glycosyl transferase compare
PP_2631 -1.0 -2.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_2820 -1.0 -2.0 HTH-type transcriptional regulator nfxB compare
PP_2336 -1.0 -2.7 aconitate hydratase 1 compare
PP_2976 -1.0 -2.0 putative transposase compare
PP_0293 -1.0 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4504 -1.0 -1.3 conserved exported protein of unknown function compare
PP_5230 -1.0 -2.5 Tyrosine recombinase XerC compare
PP_0368 -1.0 -5.3 putative Acyl-CoA dehydrogenase compare
PP_4724 -1.0 -3.0 Carbamoyl-phosphate synthase small chain compare
PP_1994 -1.0 -1.5 tRNA pseudouridine (38-40)synthase compare
PP_1778 -1.0 -4.0 Lipopolysaccharide ABC export system, permease protein compare
PP_4124 -1.0 -3.3 NADH-quinone oxidoreductase subunit G compare
PP_5445 -0.9 -1.4 conserved protein of unknown function compare
PP_2060 -0.9 -2.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1217 -0.9 -3.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4131 -0.9 -3.9 NADH-quinone oxidoreductase subunit N compare
PP_2302 -0.9 -3.3 DNA-binding, ATP-dependent protease compare
PP_1553 -0.9 -1.5 conserved protein of unknown function compare
PP_4895 -0.9 -2.0 tRNA dimethylallyltransferase compare
PP_4120 -0.9 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_1078 -0.9 -4.5 putative ABC transporter, ATP-binding protein compare
PP_1734 -0.9 -2.8 Probable septum site-determining protein MinC compare
PP_4159 -0.9 -1.8 Potassium-transporting ATPase C chain compare
PP_0346 -0.9 -4.9 putative Heptose kinase WapQ compare
PP_5580 -0.9 -1.9 protein of unknown function compare
PP_4130 -0.9 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2740 -0.9 -2.1 Transcriptional regulator, MerR family compare
PP_4199 -0.9 -1.1 putative Lipoprotein compare
PP_4700 -0.8 -0.9 pantothenate synthetase compare
PP_1783 -0.8 -1.1 dTDP-glucose pyrophosphorylase compare
PP_0872 -0.8 -4.1 Peptide chain release factor 3 compare
PP_4726 -0.8 -2.1 Chaperone protein DnaJ compare
PP_0401 -0.8 -2.6 Ribosomal RNA small subunit methyltransferase A compare
PP_5507 -0.8 -2.4 protein of unknown function compare
PP_2137 -0.8 -1.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_5338 -0.8 -1.6 aspartate ammonia-lyase compare
PP_2615 -0.8 -2.4 hemolysin-coregulated protein compare
PP_4004 -0.8 -2.6 DNA translocase FtsK compare
PP_1776 -0.8 -6.5 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_3625 -0.8 -3.3 Transporter, LysE family compare
PP_0319 -0.8 -1.7 conserved protein of unknown function compare
PP_1598 -0.8 -2.7 regulatory intramembrane protein RIP zinc protease compare
PP_5352 -0.8 -5.1 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0948 -0.8 -1.7 Phosphocarrier protein HPr compare
PP_1629 -0.8 -2.8 Protein RecA compare
PP_0653 -0.8 -1.2 conserved protein of unknown function compare
PP_1804 -0.8 -5.5 Glycosyl transferase WbpL compare
PP_1493 -0.8 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4540 -0.8 -2.9 Hydrolase, alpha/beta fold family compare
PP_5310 -0.8 -2.8 junction-specific ATP-dependent DNA helicase compare
PP_4938 -0.8 -4.0 putative Glycosyl transferase compare
PP_0949 -0.7 -3.2 putative ATP-binding protein UPF0042 compare
PP_2247 -0.7 -2.0 putative Endoribonuclease compare
PP_2144 -0.7 -2.4 Transcriptional regulator, TetR family compare
PP_4121 -0.7 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_4723 -0.7 -4.2 Carbamoyl-phosphate synthase large chain compare
PP_5706 -0.7 -1.5 Sec translocation complex - SecG subunit compare
PP_3971 -0.7 -1.4 conserved protein of unknown function compare
PP_4837 -0.7 -2.8 conserved protein of unknown function compare
PP_2306 -0.7 -1.1 conserved exported protein of unknown function compare
PP_3637 -0.7 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5090 -0.7 -2.2 putative cell division protein compare
PP_0782 -0.7 -2.6 conserved protein of unknown function compare
PP_5054 -0.7 -1.4 glutaredoxin 3 compare
PP_2379 -0.7 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_5594 -0.7 -1.6 conserved protein of unknown function compare
PP_4799 -0.7 -1.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2160 -0.7 -2.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5289 -0.7 -2.4 Acetylglutamate kinase compare
PP_0910 -0.7 -3.0 conserved exported protein of unknown function compare
PP_5529 -0.7 -3.1 putative epimerase compare
PP_1805 -0.7 -6.1 Polysaccharide biosynthesis protein compare
PP_4891 -0.7 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1366 -0.7 -1.0 Transcriptional regulator MvaT, P16 subunit compare
PP_1204 -0.7 -2.7 putative Lipoprotein compare
PP_1802 -0.7 -5.6 glycosyl transferase compare
PP_0855 -0.7 -1.5 conserved protein of unknown function compare
PP_1986 -0.7 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_4940 -0.7 -3.6 Putative glycosyltransferase compare
PP_3522 -0.7 -2.1 conserved protein of unknown function compare
PP_4214 -0.7 -2.2 pyoverdine biosynthesis related protein compare
PP_2118 -0.7 -1.3 conserved protein of unknown function compare
PP_t11 -0.7 -1.7 tRNA-Lys compare
PP_5331 -0.7 -2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_5533 -0.7 -1.2 conserved protein of unknown function compare
PP_0111 -0.7 -3.9 Electron transport protein SCO1/SenC compare
PP_2748 -0.7 -1.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4470 -0.6 -1.8 putative transcriptional regulator (Arc domain-containing) compare
PP_4941 -0.6 -3.6 conserved exported protein of unknown function compare
PP_1216 -0.6 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1799 -0.6 -4.9 GDP-mannose 4,6-dehydratase compare
PP_0119 -0.6 -2.8 putative zinc uptake regulation protein ZUR compare
PP_0340 -0.6 -4.2 Glutamate-ammonia-ligase adenylyltransferase compare
PP_4263 -0.6 -2.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1079 -0.6 -2.9 Ornithine carbamoyltransferase compare
PP_0939 -0.6 -2.7 Carbon-nitrogen hydrolase family protein compare
PP_1233 -0.6 -2.4 sulfurtransferase compare
PP_1678 -0.6 -2.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3075 -0.6 -2.5 putative transcriptional regulator compare
PP_5525 -0.6 -1.3 conserved exported protein of unknown function compare
PP_2087 -0.6 -1.4 CmpX protein compare
PP_1744 -0.6 -2.4 conserved exported protein of unknown function compare
PP_1513 -0.6 -1.7 Ribosomal RNA small subunit methyltransferase J compare
PP_0856 -0.6 -1.5 conserved lipoprotein of unknown function compare
PP_1742 -0.6 -1.7 conserved inner membrane protein of unknown function compare
PP_3392 -0.6 -1.4 conserved protein of unknown function compare
PP_4811 -0.6 -2.3 Gamma-glutamyl phosphate reductase compare
PP_4253 -0.6 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_0291 -0.6 -1.7 conserved protein of unknown function compare
PP_4917 -0.6 -1.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1803 -0.6 -4.3 UDP-sugar epimerase compare
PP_3899 -0.6 -1.7 conserved protein of unknown function, hicB family compare
PP_4591 -0.6 -2.2 Ribonuclease D compare
PP_1099 -0.6 -1.3 Cold shock protein CapB compare
PP_4613 -0.6 -4.1 outer membrane ferric citrate porin compare
PP_4387 -0.6 -1.4 conserved exported protein of unknown function compare
PP_3073 -0.6 -2.9 3-hydroxybutyrate dehydrogenase compare
PP_1084 -0.6 -2.5 putative peroxiredoxin compare
PP_5647 -0.6 -2.5 conserved protein of unknown function compare
PP_1813 -0.6 -1.7 ComEA-related protein compare
PP_1439 -0.6 -1.3 conserved exported protein of unknown function compare
PP_5519 -0.6 -1.8 conserved protein of unknown function of phage origin compare
PP_1658 -0.6 -2.0 conserved protein of unknown function compare
PP_3362 -0.6 -2.7 Transcriptional regulator, AsnC family compare
PP_5053 -0.6 -2.6 Protein-export protein SecB compare
PP_2163 -0.6 -3.1 VacJ lipoprotein compare
PP_0224 -0.6 -2.8 Monooxygenase, DszC family compare
PP_2737 -0.6 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3892 -0.6 -1.0 conserved protein of unknown function compare
PP_3649 -0.6 -1.8 Transcriptional regulator, GntR family compare
PP_1779 -0.6 -2.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2203 -0.6 -1.1 conserved protein of unknown function compare
PP_5224 -0.6 -2.3 conserved protein of unknown function compare
PP_1328 -0.6 -1.7 Protein MraZ compare
PP_2077 -0.6 -2.6 diaminopimelate decarboxylase compare
PP_5201 -0.6 -1.3 conserved protein of unknown function, UPF0149 family compare
PP_4262 -0.6 -1.2 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0984 -0.6 -2.7 conserved membrane protein of unknown function compare
PP_0958 -0.6 -2.4 phospholipid ABC transporter ATP-binding subunit compare
PP_3341 -0.6 -2.3 nickel-responsive regulator compare
PP_3488 -0.6 -2.4 Sco1/SenC family protein compare
PP_2648 -0.6 -1.7 Universal stress protein family compare
PP_1672 -0.6 -2.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1780 -0.6 -5.0 putative mannosyltransferase compare
PP_2684 -0.5 -2.3 conserved membrane protein of unknown function compare
PP_4722 -0.5 -1.7 Transcription elongation factor GreA compare


Specific Phenotypes

For 1 genes in this experiment

For stress 2-Piperidinone in Pseudomonas putida KT2440

For stress 2-Piperidinone across organisms