Experiment set3IT087 for Agrobacterium fabrum C58

Compare to:

Nicotinamide nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.1 -3.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3469 -4.3 -4.1 phosphoglyceromutase compare
Atu0041 -4.2 -4.1 glutamine amidotransferase compare
Atu3706 -4.2 -11.4 D-3-phosphoglycerate dehydrogenase compare
Atu1687 -4.1 -10.8 anthranilate phosphoribosyltransferase compare
Atu1750 -3.9 -9.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu4505 -3.9 -12.0 LacI family transcriptional regulator compare
Atu0043 -3.8 -4.5 imidazoleglycerol-phosphate dehydratase compare
Atu0099 -3.8 -11.2 prephenate dehydratase compare
Atu2289 -3.7 -20.5 anthranilate synthase component I and II compare
Atu3740 -3.7 -15.1 fructose bisphosphate aldolase compare
Atu4616 -3.7 -3.2 dTDP-4-dehydrorhamnose reductase compare
Atu0679 -3.6 -7.5 ATP phosphoribosyltransferase compare
Atu0678 -3.5 -8.2 histidyl-tRNA synthetase compare
Atu0537 -3.5 -8.9 histidinol dehydrogenase compare
Atu0039 -3.4 -2.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu3707 -3.4 -5.1 phosphoserine aminotransferase compare
Atu2040 -3.4 -7.7 phosphoserine phosphatase compare
Atu4613 -3.3 -18.1 glycosyltransferase compare
Atu3739 -3.3 -5.1 phosphoglycerate kinase compare
Atu1688 -3.3 -8.2 indole-3-glycerol-phosphate synthase compare
Atu0035 -3.2 -10.0 phosphoenolpyruvate carboxykinase compare
Atu4617 -3.1 -15.9 dTDP-D-glucose-4,6-dehydratase compare
Atu0017 -3.1 -4.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4614 -3.0 -10.1 glycosyltransferase compare
Atu4615 -3.0 -12.9 glucose-1-phosphate thymidylyltransferase compare
Atu4618 -3.0 -15.6 dTDP-rhamnose-3,5-epimerase compare
Atu0486 -2.8 -5.4 dihydroorotate dehydrogenase compare
Atu2264 -2.8 -15.3 2-isopropylmalate synthase compare
Atu2791 -2.8 -8.8 3-isopropylmalate dehydrogenase compare
Atu4166 -2.8 -4.9 UDP-glucose 4-epimerase compare
Atu3353 -2.8 -13.9 mannose-1-phosphate guanylyltransferase compare
Atu1844 -2.7 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu0399 -2.7 -6.6 dihydroorotase compare
Atu1620 -2.6 -13.3 triosephosphate isomerase compare
Atu2709 -2.6 -17.9 3-isopropylmalate dehydratase, large subunit compare
Atu3885 -2.6 -8.8 inositol monophosphatase compare
Atu6114 -2.6 -1.5 hypothetical protein compare
Atu2650 -2.6 -12.3 glycerol-3-phosphate dehydrogenase compare
Atu1446 -2.6 -3.9 two component response regulator compare
Atu1850 -2.5 -4.9 phosphoribosylformylglycinamidine synthetase II compare
Atu2790 -2.5 -3.8 3-isopropylmalate dehydratase, small subunit compare
Atu1308 -2.5 -6.4 aspartate carbamoyl transferase catalytic subunit compare
Atu2036 -2.4 -14.9 acetolactate synthase III, large subunit compare
Atu2066 -2.4 -12.9 pyrazinamidase/nicotinamidase compare
Atu3311 -2.4 -15.1 phosphomannose isomerase compare
Atu2183 -2.3 -10.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1075 -2.3 -9.3 amidophosphoribosyltransferase compare
Atu1359 -2.3 -1.9 dnaK deletion suppressor protein compare
Atu0432 -2.3 -8.8 O-succinylhomoserine sulfhydrylase compare
Atu1588 -2.2 -10.8 homoserine dehydrogenase compare
Atu3754 -2.2 -8.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1307 -2.2 -5.7 dihydroorotase compare
Atu1205 -2.1 -9.9 threonine dehydratase compare
Atu5540 -2.0 -0.9 hypothetical protein compare
Atu0298 -2.0 -6.9 orotidine 5 compare
Atu2718 -2.0 -6.7 homoserine O-succinyltransferase compare
Atu1845 -2.0 -6.6 phosphoribosylformylglycinamidine synthase I compare
Atu0400 -1.9 -6.0 orotate phosphoribosyltransferase compare
Atu0038 -1.9 -4.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0647 -1.8 -5.8 phosphoribosylamine--glycine ligase compare
Atu0332 -1.8 -10.2 RNA polymerase sigma-54 factor compare
Atu0040 -1.7 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3755 -1.7 -4.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2747 -1.6 -10.5 hypothetical protein compare
Atu1141 -1.6 -4.9 Phosphoribosylglycinamide synthetase compare
Atu0769 -1.5 -2.5 protoheme IX farnesyltransferase compare
Atu1140 -1.3 -2.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2015 -1.2 -7.7 aminotransferase compare
Atu1445 -1.2 -5.0 two component sensor kinase compare
Atu2376 -1.2 -1.7 hypothetical protein compare
Atu5142 -1.2 -1.3 hypothetical protein compare
Atu5455 -1.2 -2.4 hypothetical protein compare
Atu6106 -1.1 -1.7 conserved hypothetical protein compare
Atu0824 -1.1 -1.3 hypothetical protein compare
Atu8052 -1.1 -0.8 hypothetical protein compare
Atu4711 -1.1 -3.4 two component sensor kinase compare
Atu3496 -1.0 -3.0 hypothetical protein compare
Atu0086 -1.0 -1.3 ribosome-binding factor A compare
Atu6009 -1.0 -2.0 indole-3-lactate synthase compare
Atu2155 -1.0 -8.4 methionine synthase compare
Atu6123 -1.0 -2.7 conserved hypothetical protein compare
Atu1456 -1.0 -5.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0025 -1.0 -1.7 hypothetical protein compare
Atu5061 -1.0 -1.5 glycerophosphoryl diester phosphodiesterase compare
Atu0346 -0.9 -1.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1581 -0.9 -1.6 hypothetical protein compare
Atu2200 -0.9 -3.0 cold shock protein compare
Atu3012 -0.9 -1.3 hypothetical protein compare
Atu2758 -0.9 -5.3 ammonium transporter compare
Atu4173 -0.8 -2.4 phosphoenolpyruvate-protein phosphotransferase compare
Atu2115 -0.8 -4.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2379 -0.8 -5.6 phosphomannomutase compare
Atu3467 -0.8 -2.8 hypothetical protein compare
Atu2028 -0.8 -1.9 transcriptional regulator, ArsR family compare
Atu4608 -0.8 -6.0 hypothetical protein compare
Atu4609 -0.8 -5.7 glycosyltransferase compare
Atu4773 -0.8 -0.9 two component response regulator compare
Atu1466 -0.8 -1.7 hypothetical protein compare
Atu6156 -0.7 -2.1 virA/G regulated gene compare
Atu4317 -0.7 -2.4 TetR family transcriptional regulator compare
Atu3008 -0.7 -0.9 hypothetical protein compare
Atu1686 -0.7 -5.4 peptidyl-prolyl cis-trans isomerse D compare
Atu5452 -0.7 -2.4 ABC transporter nucleotide binding/ATPase compare
Atu0322 -0.7 -3.9 enoyl CoA hydratase compare
Atu2710 -0.7 -3.8 hypothetical protein compare
Atu1679 -0.7 -1.7 peptidyl prolyl cis-trans isomerase compare
Atu1009 -0.7 -1.3 hypothetical protein compare
Atu2694 -0.7 -2.3 hypothetical protein compare
Atu2757 -0.7 -3.6 nitrogen regulatory protein PII compare
Atu2800 -0.7 -1.3 precorrin-3B C17-methyltransferase compare
Atu8062 -0.7 -2.0 hypothetical protein compare
Atu0340 -0.7 -1.2 SAM dependent methyltransferase compare
Atu1457 -0.6 -1.7 hypothetical protein compare
Atu0031 -0.6 -1.0 PTS system, IIA component compare
Atu0030 -0.6 -1.0 phosphocarrier protein HPr compare
Atu0690 -0.6 -2.1 hypothetical protein compare
Atu5162 -0.6 -2.1 type IV secretion protein AvhB1 compare
Atu0845 -0.6 -2.9 hypothetical protein compare
Atu4502 -0.6 -3.8 cobalamin synthesis protein compare
Atu1103 -0.6 -1.5 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0361 -0.6 -1.7 transcriptional regulator compare
Atu5167 -0.6 -2.1 type IV secretion protein AvhB6 compare
Atu5045 -0.6 -0.8 hypothetical protein compare
Atu5186 -0.6 -0.8 hypothetical protein compare
Atu5197 -0.6 -2.5 LysR family transcriptional regulator compare
Atu1455 -0.6 -2.0 hypothetical protein compare
Atu3075 -0.6 -3.7 TetR family transcriptional regulator compare
Atu5117 -0.6 -2.2 hypothetical protein compare
Atu6120 -0.6 -1.5 HNS-type DNA binding protein compare
Atu8034 -0.6 -1.6 hypothetical protein compare
Atu2832 -0.6 -2.1 tRNA modification GTPase compare
Atu6197 -0.6 -1.4 agrocinopine phosphodiesterase compare
Atu2777 -0.6 -3.6 hypothetical protein compare
Atu6195 -0.6 -1.0 conserved hypothetical protein compare
Atu2793 -0.6 -3.1 cobyrinic acid a,c-diamide synthase compare
Atu5011 -0.6 -2.6 polyketide biosynthesis dithiol-disulfide isomerase compare
Atu4610 -0.6 -4.2 sugar nucleotide epimerase/dehydratase compare
Atu4161 -0.6 -1.2 hypothetical protein compare
Atu0189 -0.6 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu5462 -0.6 -1.6 ABC transporter nucleotide binding/ATPase compare
Atu5533 -0.6 -3.0 ABC transporter membrane spanning protein compare
Atu6013 -0.6 -2.2 6a protein compare
Atu1163 -0.6 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2787 -0.6 -0.7 hypothetical protein compare
Atu1232 -0.5 -1.3 hypothetical protein compare
Atu1667 -0.5 -1.2 hypothetical protein compare
Atu0501 -0.5 -4.2 acyl-CoA dehydrogenase compare
Atu8053 -0.5 -1.0 hypothetical protein compare
Atu1038 -0.5 -1.8 two component response regulator compare
Atu1774 -0.5 -3.7 ABC transporter, substrate binding protein (peptide) compare
Atu5470 -0.5 -1.0 hypothetical protein compare
Atu5147 -0.5 -1.9 Mg(2+) transport ATPase compare
Atu1454 -0.5 -3.1 siroheme synthase compare
Atu1699 -0.5 -2.0 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu5473 -0.5 -1.6 D-alanine aminotransferase compare
Atu2207 -0.5 -1.4 two component sensor kinase compare
Atu6096 -0.5 -1.9 conserved hypothetical protein compare
Atu1527 -0.5 -1.6 nitrogen fixation protein FixS compare
Atu0762 -0.5 -1.4 hypothetical protein compare
Atu1801 -0.5 -1.8 hypothetical protein compare
Atu0463 -0.5 -2.6 hypothetical protein compare
Atu2789 -0.5 -1.6 hypothetical protein compare
Atu5493 -0.5 -1.0 hypothetical protein compare
Atu0535 -0.5 -2.1 hypothetical protein compare
Atu2772 -0.5 -2.6 Invasion protein A compare
Atu3788 -0.5 -2.2 potassium-transporting ATPase subunit C compare
Atu2812 -0.5 -2.9 hypothetical protein compare
Atu0107 -0.5 -1.4 hypothetical protein compare
Atu1028 -0.5 -1.5 hypothetical protein compare
Atu2209 -0.5 -1.8 pyrroline-5-carboxylate reductase compare
Atu5026 -0.5 -1.2 hypothetical protein compare
Atu0188 -0.5 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu2057 -0.5 -1.6 DNA helicase II compare
Atu1464 -0.5 -2.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu0895 -0.5 -1.4 ABC transporter, substrate binding protein compare
Atu2367 -0.5 -1.7 hypothetical protein compare
Atu0744 -0.5 -2.0 hypothetical protein compare
Atu5149 -0.5 -1.4 acetyltransferase compare
Atu6104 -0.5 -1.4 conserved hypothetical protein compare
Atu1803 -0.5 -2.4 cold shock protein compare
Atu2811 -0.4 -3.1 hypothetical protein compare
Atu0422 -0.4 -0.6 ABC transporter, membrane spanning protein compare
Atu1191 -0.4 -1.7 hypothetical protein compare
Atu0117 -0.4 -2.6 hypothetical protein compare
Atu1005 -0.4 -1.8 hypothetical protein compare
Atu4391 -0.4 -1.2 nitric oxide reductase NorE protein compare
Atu1737 -0.4 -0.9 hypothetical protein compare
Atu3492 -0.4 -2.2 sugar kinase compare
Atu0837 -0.4 -2.6 transcriptional regulator, MarR family compare
Atu1641 -0.4 -1.0 hypothetical protein compare
Atu8145 -0.4 -1.6 hypothetical protein compare
Atu5072 -0.4 -2.2 hypothetical protein compare
Atu6153 -0.4 -1.0 conserved hypothetical protein compare
Atu4881 -0.4 -2.3 hypothetical protein compare
Atu8023 -0.4 -1.3 hypothetical protein compare
Atu1160 -0.4 -2.2 hypothetical protein compare
Atu2783 -0.4 -2.4 acetyltransferase compare
Atu5030 -0.4 -1.5 hypothetical protein compare
Atu3666 -0.4 -2.1 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Nicotinamide in Agrobacterium fabrum C58

For nitrogen source Nicotinamide across organisms