Experiment set3IT086 for Pseudomonas putida KT2440

Compare to:

LB with Butyrolactam 2 vol%

200 most important genes:

  gene name fitness t score description  
PP_0846 -4.5 -3.1 DnaK-like molecular chaperone specific for IscU compare
PP_4936 -3.9 -10.3 O-antigen polymerase compare
PP_4938 -3.2 -10.6 putative Glycosyl transferase compare
PP_0164 -3.1 -9.5 conserved protein of unknown function compare
PP_0888 -3.0 -3.5 Photosynthetic apparatus regulatory protein RegA compare
PP_4943 -2.9 -3.4 putative Glycosyl transferase compare
PP_0833 -2.9 -2.8 queuine tRNA-ribosyltransferase compare
PP_4940 -2.9 -8.7 Putative glycosyltransferase compare
PP_4902 -2.8 -3.7 Oligoribonuclease compare
PP_1778 -2.7 -7.5 Lipopolysaccharide ABC export system, permease protein compare
PP_1215 -2.6 -2.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_4937 -2.3 -4.9 toluene tolerance protein compare
PP_5328 -2.3 -4.2 putative phosphate transport system permease protein compare
PP_3245 -2.1 -1.8 conserved protein of unknown function compare
PP_4880 -2.0 -9.7 exoribonuclease R compare
PP_4355 -2.0 -2.9 flagellar export apparatus subunit compare
PP_4999 -1.9 -2.0 dihydroorotase-like protein compare
PP_5338 -1.9 -3.1 aspartate ammonia-lyase compare
PP_5095 -1.9 -1.8 pyrroline-5-carboxylate reductase compare
PP_1353 -1.8 -3.6 conserved membrane protein of unknown function compare
PP_2307 -1.8 -4.0 conserved protein of unknown function compare
PP_4964 -1.8 -3.8 D-erythrose 4-phosphate dehydrogenase compare
PP_2976 -1.7 -2.9 putative transposase compare
PP_2414 -1.7 -3.5 conserved exported protein of unknown function compare
PP_2402 -1.7 -2.8 putative Sensor histidine kinase compare
PP_0339 -1.6 -4.2 Pyruvate dehydrogenase E1 component compare
PP_1938 -1.6 -2.9 conserved protein of unknown function compare
PP_4726 -1.6 -2.4 Chaperone protein DnaJ compare
PP_4697 -1.5 -3.8 poly(A) polymerase compare
PP_2060 -1.5 -2.5 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0063 -1.5 -3.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2000 -1.4 -3.0 amidophosphoribosyl transferase compare
PP_4804 -1.4 -3.1 RlpA-like lipoprotein compare
PP_4797 -1.4 -2.2 conserved protein of unknown function compare
PP_2820 -1.3 -1.7 HTH-type transcriptional regulator nfxB compare
PP_2379 -1.3 -3.7 putative cytochrome oxidase biogenesis protein compare
PP_1702 -1.3 -3.0 Recombination-associated protein RdgC compare
PP_5090 -1.3 -2.6 putative cell division protein compare
PP_1733 -1.3 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_3449 -1.3 -1.8 conserved exported protein of unknown function compare
PP_5667 -1.2 -3.5 putative microcin B17-like-processing protein, McbC family compare
PP_0293 -1.2 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0218 -1.2 -4.5 Sensory box protein compare
PP_3378 -1.2 -2.4 putative 2-ketogluconokinase compare
PP_4532 -1.2 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0963 -1.2 -2.6 putative BolA family protein compare
PP_4136 -1.2 -1.0 Transcriptional regulator, LuxR family compare
PP_0719 -1.2 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3539 -1.2 -2.9 putative Transcriptional regulator compare
PP_5327 -1.2 -3.1 putative phosphate ABC transporter, permease subunit compare
PP_1575 -1.1 -2.3 conserved protein of unknown function compare
PP_2903 -1.1 -2.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1088 -1.1 -5.5 Argininosuccinate synthase compare
PP_4700 -1.1 -0.8 pantothenate synthetase compare
PP_0949 -1.1 -5.0 putative ATP-binding protein UPF0042 compare
PP_1513 -1.1 -2.8 Ribosomal RNA small subunit methyltransferase J compare
PP_0856 -1.1 -2.6 conserved lipoprotein of unknown function compare
PP_2525 -1.1 -3.0 conserved protein of unknown function compare
PP_4724 -1.1 -2.4 Carbamoyl-phosphate synthase small chain compare
PP_1428 -1.1 -2.1 Sigma factor AlgU negative regulatory protein compare
PP_2668 -1.1 -1.9 ABC efflux transporter, ATP-binding protein compare
PP_4342 -1.1 -3.2 flagellar synthesis regulator, putative ATPase compare
PP_4722 -1.1 -2.8 Transcription elongation factor GreA compare
PP_4546 -1.1 -3.4 ATP-dependent helicase HrpA compare
PP_4811 -1.1 -2.9 Gamma-glutamyl phosphate reductase compare
PP_5556 -1.1 -2.9 putative bacteriophage lysis protein compare
PP_0035 -1.1 -2.0 putative bactoprenol-linked glycose transferase compare
PP_1099 -1.0 -2.5 Cold shock protein CapB compare
PP_3821 -1.0 -4.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0691 -1.0 -1.8 Glutamate 5-kinase compare
PP_2462 -1.0 -2.5 conserved protein of unknown function compare
PP_2077 -1.0 -4.7 diaminopimelate decarboxylase compare
PP_1898 -1.0 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PP_5508 -1.0 -1.2 conserved protein of unknown function compare
PP_4874 -1.0 -0.8 50S ribosomal protein L9 compare
PP_2720 -1.0 -1.3 conserved protein of unknown function compare
PP_5329 -1.0 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2378 -1.0 -1.9 Fe/S biogenesis protein NfuA compare
PP_5SB -1.0 -2.4 5S ribosomal RNA compare
PP_1779 -1.0 -3.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1598 -1.0 -3.1 regulatory intramembrane protein RIP zinc protease compare
PP_4004 -1.0 -2.1 DNA translocase FtsK compare
PP_2547 -1.0 -1.8 Transcriptional regulator, LysR family compare
PP_5604 -1.0 -1.0 putative subtilisin-like serine protease compare
PP_0313 -1.0 -2.3 putative electron transfer flavoprotein beta subunit compare
PP_0653 -1.0 -1.3 conserved protein of unknown function compare
PP_5309 -0.9 -3.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1629 -0.9 -3.1 Protein RecA compare
PP_0872 -0.9 -3.8 Peptide chain release factor 3 compare
PP_1799 -0.9 -6.5 GDP-mannose 4,6-dehydratase compare
PP_4130 -0.9 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4156 -0.9 -2.2 Transcriptional regulator, LysR family compare
PP_4262 -0.9 -1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5001 -0.9 -1.3 protease HslVU, ATPase component compare
PP_1801 -0.9 -6.4 Glycosyl transferase WbpY compare
PP_5331 -0.9 -2.2 Long-chain acyl-CoA thioester hydrolase compare
PP_5582 -0.9 -1.1 conserved protein of unknown function compare
PP_0434 -0.9 -4.6 Anhydro-N-acetylmuramic acid kinase compare
PP_5279 -0.9 -1.8 conserved protein of unknown function compare
PP_1553 -0.9 -1.7 conserved protein of unknown function compare
PP_5232 -0.9 -1.3 conserved protein of unknown function compare
PP_0401 -0.9 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_1780 -0.9 -7.4 putative mannosyltransferase compare
PP_1734 -0.9 -2.7 Probable septum site-determining protein MinC compare
PP_1430 -0.9 -4.4 putative periplasmic serine endoprotease DegP-like compare
PP_1208 -0.8 -1.2 conserved protein of unknown function, SlyX family compare
PP_5168 -0.8 -3.0 sulfate/thiosulfate import ATP-binding protein compare
PP_2580 -0.8 -1.9 conserved protein of unknown function compare
PP_1783 -0.8 -1.0 dTDP-glucose pyrophosphorylase compare
PP_2684 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_2337 -0.8 -1.4 aconitate isomerase compare
PP_5042 -0.8 -2.6 conserved protein of unknown function compare
PP_2939 -0.8 -3.3 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_5230 -0.8 -1.8 Tyrosine recombinase XerC compare
PP_5580 -0.8 -1.2 protein of unknown function compare
PP_3757 -0.8 -2.6 Chemotaxis protein CheY compare
PP_2880 -0.8 -1.7 Transcriptional regulator, TetR family compare
PP_1079 -0.8 -3.9 Ornithine carbamoyltransferase compare
PP_3649 -0.8 -2.0 Transcriptional regulator, GntR family compare
PP_4198 -0.8 -3.8 OmpA family protein compare
PP_4343 -0.8 -3.3 Flagellar biosynthesis protein FlhF compare
PP_4799 -0.8 -1.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5529 -0.8 -3.7 putative epimerase compare
PP_2302 -0.8 -3.1 DNA-binding, ATP-dependent protease compare
PP_3353 -0.8 -1.9 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_1216 -0.8 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5310 -0.8 -2.6 junction-specific ATP-dependent DNA helicase compare
PP_1293 -0.8 -1.3 molybdopterin synthase small subunit compare
PP_3505 -0.8 -1.0 conserved protein of unknown function compare
PP_4723 -0.8 -3.9 Carbamoyl-phosphate synthase large chain compare
PP_1802 -0.8 -6.2 glycosyl transferase compare
PP_4517 -0.8 -1.2 conserved protein of unknown function compare
PP_2931 -0.8 -2.9 conserved protein of unknown function compare
PP_4582 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_0910 -0.8 -3.0 conserved exported protein of unknown function compare
PP_5146 -0.8 -3.3 RNA pyrophosphohydrolase compare
PP_5352 -0.8 -4.9 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_1719 -0.8 -3.8 Tail-specific protease prc compare
PP_1055 -0.8 -0.9 Type II secretion pathway protein GspN compare
PP_4126 -0.8 -1.0 NADH-quinone oxidoreductase subunit I compare
PP_2442 -0.8 -1.7 conserved protein of unknown function, DUF480 family compare
PP_3496 -0.8 -3.0 Endoribonuclease L-PSP compare
PP_3946 -0.8 -0.8 HTH-type transcriptional repressor NicR compare
PP_0165 -0.8 -5.5 GGDEF domain protein compare
PP_5100 -0.7 -2.5 dITP/XTP pyrophosphatase compare
PP_0547 -0.7 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1126 -0.7 -5.1 putative Hydrolase compare
PP_1644 -0.7 -3.1 NAD(P)H dehydrogenase (quinone) compare
PP_4296 -0.7 -1.3 conserved exported protein of unknown function compare
PP_4910 -0.7 -1.5 conserved protein of unknown function compare
PP_0789 -0.7 -2.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2922 -0.7 -2.0 Urea amidolyase-related protein compare
PP_2336 -0.7 -2.3 aconitate hydratase 1 compare
PP_0938 -0.7 -4.3 conserved protein of unknown function compare
PP_5381 -0.7 -2.0 hypothetical protein compare
PP_0167 -0.7 -5.8 Toxin secretion ATP-binding protein compare
PP_1654 -0.7 -2.1 cysteine synthase B compare
PP_0345 -0.7 -1.7 putative Heptose kinase WapP compare
PP_0184 -0.7 -2.5 Argininosuccinate lyase compare
PP_1217 -0.7 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1344 -0.7 -1.0 conserved protein of unknown function compare
PP_1805 -0.7 -5.9 Polysaccharide biosynthesis protein compare
PP_4005 -0.7 -2.2 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_5267 -0.7 -1.5 putative cytochrome c5 compare
PP_0725 -0.7 -2.4 conserved hypothetical TPR repeat protein compare
PP_1325 -0.7 -3.4 putative lipoprotein compare
PP_1804 -0.7 -5.1 Glycosyl transferase WbpL compare
PP_4387 -0.7 -1.2 conserved exported protein of unknown function compare
PP_1526 -0.7 -4.9 putative Beta-(1-3)-glucosyl transferase compare
PP_3185 -0.7 -2.7 Pet18 protein compare
PP_4942 -0.7 -1.3 conserved protein of unknown function compare
PP_4383 -0.7 -1.7 Flagellar P-ring protein compare
PP_4581 -0.7 -1.4 putative amidotransferase compare
PP_4199 -0.7 -0.8 putative Lipoprotein compare
PP_1729 -0.7 -1.3 conserved protein of unknown function compare
PP_1233 -0.7 -2.8 sulfurtransferase compare
PP_1986 -0.7 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_0166 -0.7 -4.6 HlyD family secretion protein compare
PP_2972 -0.7 -1.4 conserved protein of unknown function compare
PP_0094 -0.7 -2.8 5'-nucleotidase compare
PP_4098 -0.7 -1.0 UvrABC system protein C compare
PP_5711 -0.7 -1.4 protein of unknown function compare
PP_3460 -0.7 -1.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4329 -0.7 -1.7 FlhB domain protein compare
PP_1632 -0.7 -1.2 conserved protein of unknown function compare
PP_1713 -0.7 -1.0 Transcriptional regulator PcaQ compare
PP_5000 -0.7 -1.2 peptidase component of the ATP-dependent HslVU protease compare
PP_3880 -0.7 -1.1 conserved exported protein of unknown function compare
PP_0152 -0.7 -1.3 conserved exported protein of unknown function compare
PP_5429 -0.7 -2.2 protein of unknown function compare
PP_5014 -0.7 -1.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1204 -0.7 -2.4 putative Lipoprotein compare
PP_2397 -0.7 -2.9 EF hand domain protein compare
PP_0852 -0.7 -1.7 Transcriptional regulator, Cro/CI family compare
PP_2852 -0.7 -4.2 putative Sulfatase domain protein compare
PP_4837 -0.7 -1.9 conserved protein of unknown function compare
PP_0901 -0.7 -3.2 DNA-binding response regulator compare
PP_4917 -0.7 -1.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2793 -0.7 -0.8 Acyl-CoA dehydrogenase family protein compare
PP_4385 -0.7 -2.6 flagellar basal-body rod protein FlgG compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Butyrolactam across organisms