Experiment set3IT085 for Pseudomonas putida KT2440

Compare to:

LB with 2-Ethylhexanol 0.4 vol%

200 most important genes:

  gene name fitness t score description  
PP_2163 -4.9 -4.8 VacJ lipoprotein compare
PP_1386 -4.3 -10.4 Probable efflux pump periplasmic linker TtgA compare
PP_1385 -4.2 -19.2 Probable efflux pump membrane transporter TtgB compare
PP_0346 -4.2 -12.3 putative Heptose kinase WapQ compare
PP_0958 -3.7 -7.1 phospholipid ABC transporter ATP-binding subunit compare
PP_1384 -3.7 -8.3 Probable efflux pump outer membrane protein TtgC compare
PP_5328 -3.5 -5.8 putative phosphate transport system permease protein compare
PP_0960 -3.4 -7.2 phospholipid ABC transporter binding protein compare
PP_0961 -3.2 -9.2 toluene tolerance protein compare
PP_0962 -3.0 -4.5 toluene-tolerance protein compare
PP_2379 -2.9 -5.1 putative cytochrome oxidase biogenesis protein compare
PP_0119 -2.9 -6.7 putative zinc uptake regulation protein ZUR compare
PP_0063 -2.7 -6.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0345 -2.5 -4.5 putative Heptose kinase WapP compare
PP_4937 -2.5 -4.7 toluene tolerance protein compare
PP_5095 -2.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_5329 -2.4 -5.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5309 -2.3 -6.5 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2903 -2.3 -2.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3946 -2.2 -2.0 HTH-type transcriptional repressor NicR compare
PP_1598 -2.2 -4.9 regulatory intramembrane protein RIP zinc protease compare
PP_0888 -2.1 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0833 -2.0 -2.6 queuine tRNA-ribosyltransferase compare
PP_4342 -1.8 -4.6 flagellar synthesis regulator, putative ATPase compare
PP_5706 -1.8 -3.3 Sec translocation complex - SecG subunit compare
PP_1468 -1.8 -2.7 Tyrosine recombinase XerD compare
PP_5017 -1.7 -1.9 Sec-independent protein translocase protein TatB compare
PP_0691 -1.7 -3.8 Glutamate 5-kinase compare
PP_2060 -1.7 -2.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4964 -1.6 -3.8 D-erythrose 4-phosphate dehydrogenase compare
PP_1646 -1.6 -3.6 putative Thioredoxin compare
PP_2449 -1.6 -4.5 conserved protein of unknown function compare
PP_1232 -1.6 -7.7 conserved exported protein of unknown function compare
PP_2631 -1.6 -2.9 putative cellulose biosynthesis, BcsF/YhjT compare
PP_3454 -1.6 -4.7 putative transcriptional regulatory protein compare
PP_4098 -1.5 -1.9 UvrABC system protein C compare
PP_1728 -1.5 -7.4 conserved membrane protein of unknown function compare
PP_4268 -1.5 -1.6 nucleoid-associated broad specificity regulator compare
PP_5327 -1.5 -3.7 putative phosphate ABC transporter, permease subunit compare
PP_1719 -1.5 -6.6 Tail-specific protease prc compare
PP_0856 -1.5 -3.0 conserved lipoprotein of unknown function compare
PP_0959 -1.5 -1.9 phospholipid ABC transporter compare
PP_4874 -1.5 -1.6 50S ribosomal protein L9 compare
PP_3241 -1.4 -1.6 conserved exported protein of unknown function compare
PP_5331 -1.4 -3.9 Long-chain acyl-CoA thioester hydrolase compare
PP_1078 -1.4 -5.1 putative ABC transporter, ATP-binding protein compare
PP_3508 -1.4 -3.4 Protein CobW compare
PP_4943 -1.4 -2.0 putative Glycosyl transferase compare
PP_3453 -1.4 -6.8 putative Sensor protein RstB compare
PP_0117 -1.4 -5.6 Zn(2+) ABC transporter - permease subunit compare
PP_1734 -1.3 -3.5 Probable septum site-determining protein MinC compare
PP_3505 -1.3 -1.3 conserved protein of unknown function compare
PP_3365 -1.3 -1.4 Acetolactate synthase compare
PP_0435 -1.3 -7.6 Peptidase, M23/M37 family compare
PP_1128 -1.3 -3.0 OmpA family protein compare
PP_1204 -1.3 -4.5 putative Lipoprotein compare
PP_1783 -1.3 -0.9 dTDP-glucose pyrophosphorylase compare
PP_3474 -1.3 -2.4 putative Curli fiber protein CsgE compare
PP_1097 -1.3 -1.8 Methionine--tRNA ligase compare
PP_2322 -1.3 -5.9 Major outer membrane lipoprotein compare
PP_3105 -1.2 -2.6 conserved membrane protein of unknown function compare
PP_3190 -1.2 -3.3 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_5058 -1.2 -4.5 Carboxy-terminal-processing protease compare
PP_2088 -1.2 -3.2 RNA polymerase sigma factor SigX compare
PP_4004 -1.2 -3.2 DNA translocase FtsK compare
PP_4836 -1.2 -3.4 conserved exported protein of unknown function compare
PP_4880 -1.2 -6.8 exoribonuclease R compare
PP_0111 -1.2 -7.1 Electron transport protein SCO1/SenC compare
PP_2000 -1.2 -2.4 amidophosphoribosyl transferase compare
PP_0339 -1.2 -3.9 Pyruvate dehydrogenase E1 component compare
PP_4942 -1.1 -1.8 conserved protein of unknown function compare
PP_5232 -1.1 -2.6 conserved protein of unknown function compare
PP_0120 -1.1 -5.3 putative zinc ABC transporter compare
PP_4804 -1.1 -2.8 RlpA-like lipoprotein compare
PP_1428 -1.1 -2.7 Sigma factor AlgU negative regulatory protein compare
PP_1186 -1.1 -1.8 two component system DNA-binding transcriptional dual regulator compare
PP_1994 -1.1 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_0834 -1.1 -1.3 Sec translocation complex subunit YajC compare
PP_4262 -1.1 -1.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5310 -1.1 -4.7 junction-specific ATP-dependent DNA helicase compare
PP_0910 -1.1 -5.3 conserved exported protein of unknown function compare
PP_3506 -1.1 -2.8 Magnesium chelatase, subunit ChII compare
PP_2402 -1.1 -1.8 putative Sensor histidine kinase compare
PP_0127 -1.1 -2.8 Thiol:disulfide interchange protein compare
PP_0855 -1.1 -1.8 conserved protein of unknown function compare
PP_3519 -1.1 -1.5 putative Lipoprotein compare
PP_1729 -1.1 -1.7 conserved protein of unknown function compare
PP_0599 -1.1 -8.0 paraquat-inducible protein B compare
PP_1214 -1.1 -1.9 putative transcriptional regulatory protein compare
PP_1036 -1.1 -4.5 membrane-bound lytic murein transglycosylase F compare
PP_0984 -1.1 -3.5 conserved membrane protein of unknown function compare
PP_5090 -1.1 -2.6 putative cell division protein compare
PP_5000 -1.0 -1.8 peptidase component of the ATP-dependent HslVU protease compare
PP_4263 -1.0 -3.6 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4700 -1.0 -0.7 pantothenate synthetase compare
PP_3014 -1.0 -1.5 conserved exported protein of unknown function compare
PP_3892 -1.0 -1.5 conserved protein of unknown function compare
PP_3460 -1.0 -2.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5338 -1.0 -2.1 aspartate ammonia-lyase compare
PP_3726 -1.0 -0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_4808 -1.0 -1.9 23S rRNA m3psi1915 methyltransferase compare
PP_1187 -1.0 -4.8 sensor protein compare
PP_2144 -1.0 -2.8 Transcriptional regulator, TetR family compare
PP_0598 -1.0 -4.8 paraquat-inducible protein A compare
PP_2378 -1.0 -1.5 Fe/S biogenesis protein NfuA compare
PP_4999 -0.9 -1.2 dihydroorotase-like protein compare
PP_1048 -0.9 -2.2 putative protein secretion protein for export compare
PP_4198 -0.9 -3.7 OmpA family protein compare
PP_1871 -0.9 -4.0 Protease HtpX compare
PP_2028 -0.9 -2.4 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0725 -0.9 -2.9 conserved hypothetical TPR repeat protein compare
PP_2032 -0.9 -3.5 putative ATPase compare
PP_4941 -0.9 -4.4 conserved exported protein of unknown function compare
PP_4126 -0.9 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_4611 -0.9 -4.1 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4613 -0.9 -5.7 outer membrane ferric citrate porin compare
PP_1898 -0.9 -2.2 MotA/TolQ/ExbB proton channel family protein compare
PP_1217 -0.9 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1676 -0.8 -2.7 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0125 -0.8 -2.0 putative cytochrome c-type protein compare
PP_5229 -0.8 -2.9 conserved protein of unknown function compare
PP_t10 -0.8 -1.6 tRNA-Pro compare
PP_4710 -0.8 -5.2 tRNA pseudouridine 55 synthase compare
PP_4726 -0.8 -1.9 Chaperone protein DnaJ compare
PP_3073 -0.8 -3.1 3-hydroxybutyrate dehydrogenase compare
PP_0513 -0.8 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1034 -0.8 -5.4 multicopper oxidase compare
PP_3098 -0.8 -1.3 conserved protein of unknown function compare
PP_5353 -0.8 -3.9 conserved exported protein of unknown function compare
PP_4891 -0.8 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1673 -0.8 -2.8 cobyrinate a,c-diamide synthase compare
PP_0393 -0.8 -1.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4826 -0.8 -3.5 Precorrin-3B C17-methyltransferase compare
PP_5745 -0.8 -3.2 paraquat-inducible protein A compare
PP_1679 -0.8 -1.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0908 -0.8 -3.2 conserved exported protein of unknown function compare
PP_5644 -0.8 -2.2 conserved membrane protein of unknown function compare
PP_4546 -0.8 -2.7 ATP-dependent helicase HrpA compare
PP_0909 -0.8 -3.8 conserved exported protein of unknown function compare
PP_2073 -0.7 -2.2 Acetyltransferase, GNAT family compare
PP_4273 -0.7 -1.3 Transcriptional regulator, MerR family compare
PP_5580 -0.7 -1.5 protein of unknown function compare
PP_5393 -0.7 -1.4 putative metal-binding chaperone compare
PP_1318 -0.7 -4.5 Cytochrome b compare
PP_1738 -0.7 -4.0 conserved exported protein of unknown function compare
PP_5324 -0.7 -2.2 Response regulator compare
PP_2077 -0.7 -3.0 diaminopimelate decarboxylase compare
PP_0630 -0.7 -1.0 DNA gyrase inhibitor YacG compare
PP_2976 -0.7 -1.3 putative transposase compare
PP_3318 -0.7 -1.5 conserved protein of unknown function compare
PP_5337 -0.7 -3.0 LysR family transcriptional regulator compare
PP_0058 -0.7 -6.1 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_3924 -0.7 -2.0 conserved protein of unknown function compare
PP_0368 -0.7 -4.8 putative Acyl-CoA dehydrogenase compare
PP_0757 -0.7 -2.4 conserved protein of unknown function compare
PP_3522 -0.7 -2.3 conserved protein of unknown function compare
PP_4478 -0.7 -4.3 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_1675 -0.7 -3.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1099 -0.7 -1.6 Cold shock protein CapB compare
PP_1692 -0.7 -1.2 conserved protein of unknown function compare
PP_2684 -0.7 -2.5 conserved membrane protein of unknown function compare
PP_1632 -0.7 -1.3 conserved protein of unknown function compare
PP_2307 -0.7 -2.1 conserved protein of unknown function compare
PP_0832 -0.7 -2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2122 -0.7 -2.5 molybdenum cofactor biosynthesis protein B compare
PP_2306 -0.7 -0.9 conserved exported protein of unknown function compare
PP_0153 -0.7 -1.5 hypothetical protein compare
PP_1672 -0.7 -2.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4296 -0.7 -1.4 conserved exported protein of unknown function compare
PP_4316 -0.7 -2.6 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_1629 -0.7 -3.0 Protein RecA compare
PP_2087 -0.7 -1.6 CmpX protein compare
PP_4464 -0.7 -3.0 Transcriptional regulator, LysR family compare
PP_4892 -0.7 -3.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4859 -0.7 -3.0 Transcriptional regulator, TetR family compare
PP_3539 -0.7 -1.6 putative Transcriptional regulator compare
PP_4832 -0.6 -1.9 Precorrin-6x reductase compare
PP_1930 -0.6 -2.2 arsenic resistance transcriptional regulator compare
PP_5352 -0.6 -4.8 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5475 -0.6 -0.8 conserved protein of unknown function compare
PP_4121 -0.6 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_1681 -0.6 -3.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0283 -0.6 -2.8 Arginine/ornithine transport ATP-binding protein AotP compare
PP_5313 -0.6 -1.9 DNA-binding protein HU-alpha compare
PP_2147 -0.6 -2.2 conserved exported protein of unknown function compare
PP_1088 -0.6 -3.4 Argininosuccinate synthase compare
PP_2356 -0.6 -3.5 putative Phytochrome family protein compare
PP_2873 -0.6 -2.2 conserved protein of unknown function, UPF0145 family compare
PP_5350 -0.6 -1.8 Transcriptional regulator, RpiR family compare
PP_0484 -0.6 -3.2 transporter of an unknown substrate compare
PP_4693 -0.6 -2.4 RNA polymerase-binding transcription factor DksA compare
PP_1142 -0.6 -1.0 conserved protein of unknown function compare
PP_1812 -0.6 -1.0 conserved protein of unknown function compare
PP_1216 -0.6 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4827 -0.6 -4.3 Precorrin-2 C(20)-methyltransferase compare
PP_2614 -0.6 -2.9 type 6 secretion system protein compare
PP_0112 -0.6 -3.5 methionine ABC transporter, periplasmic binding protein compare
PP_0182 -0.6 -2.5 conserved protein of unknown function compare
PP_2029 -0.6 -1.2 von Willebrand factor type A domain protein compare
PP_4320 -0.6 -3.3 cytochrome c-type biogenesis protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress 2-Ethylhexanol in Pseudomonas putida KT2440

For stress 2-Ethylhexanol across organisms