Experiment set3IT085 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6F2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF388 -5.2 -13.9 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF381 -2.9 -6.7 Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase compare
GFF4353 -2.8 -4.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF2501 -2.8 -1.0 FIG00638667: hypothetical protein compare
GFF3528 -2.6 -3.7 Integration host factor alpha subunit compare
GFF825 -2.4 -5.0 RNA-binding protein Hfq compare
GFF2148 -2.0 -4.3 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF1830 -2.0 -8.8 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF1832 -2.0 -8.1 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF4158 -2.0 -1.8 tmRNA-binding protein SmpB compare
GFF3315 -1.9 -1.8 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF2063 -1.8 -1.7 Inner membrane protein YfeZ compare
GFF2946 -1.8 -4.5 RNA polymerase sigma-54 factor RpoN compare
GFF2213 -1.8 -7.1 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF2808 -1.7 -6.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF1334 -1.7 -1.4 Uncharacterized protein YohL compare
GFF652 -1.7 -2.9 UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF1747 -1.7 -2.4 putative inner membrane protein compare
GFF3667 -1.6 -2.1 Cytidylate kinase (EC 2.7.4.25) compare
GFF828 -1.6 -5.5 HflC protein compare
GFF629 -1.5 -2.0 Shikimate kinase I (EC 2.7.1.71) compare
GFF4014 -1.5 -1.0 Flagellar protein FliJ compare
GFF2031 -1.5 -1.6 FIG01046611: hypothetical protein compare
GFF2104 -1.5 -2.2 ATP-dependent RNA helicase SrmB compare
GFF4615 -1.5 -1.5 FIG137478: Hypothetical protein YbgI compare
GFF188 -1.4 -6.3 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF3990 -1.4 -1.5 hypothetical protein compare
GFF2690 -1.4 -1.6 Peptide transport system permease protein SapC compare
GFF2409 -1.3 -3.7 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF1114 -1.3 -2.2 FIG01200701: possible membrane protein compare
GFF1221 -1.3 -1.8 hypothetical protein compare
GFF2906 -1.3 -3.9 Protein yifE compare
GFF2593 -1.3 -2.7 FIG00639831: hypothetical protein compare
GFF4004 -1.3 -2.3 DsrB protein compare
GFF55 -1.3 -6.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF4596 -1.2 -2.6 Ferric uptake regulation protein FUR compare
GFF4061 -1.2 -1.0 putative periplasmic protein compare
GFF3632 -1.2 -2.1 Transcriptional regulator SlyA compare
GFF4387 -1.2 -1.6 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF4774 -1.2 -1.3 FIG074102: hypothetical protein compare
GFF4654 -1.1 -3.9 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF827 -1.1 -4.7 HflK protein compare
GFF2418 -1.1 -2.3 Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3) compare
GFF122 -1.1 -5.5 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF121 -1.1 -1.8 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1503 -1.1 -3.8 Lipoprotein nlpI precursor compare
GFF2907 -1.1 -4.5 HTH-type transcriptional regulator hdfR compare
GFF4358 -1.0 -1.1 FIG01200701: possible membrane protein compare
GFF4233 -1.0 -1.2 Fimbrial protein precursor compare
GFF794 -1.0 -1.7 Phage holin compare
GFF916 -1.0 -1.8 RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE) compare
GFF1219 -1.0 -2.5 FIG01048676: hypothetical protein compare
GFF2201 -1.0 -2.1 putative DNA-binding protein compare
GFF1502 -1.0 -5.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF3748 -1.0 -0.8 FIG002927: hypothetical protein compare
GFF2163 -1.0 -2.6 FIG01047222: hypothetical protein compare
GFF873 -1.0 -1.1 hypothetical protein compare
GFF2314 -1.0 -3.8 ATP-dependent protease HslV (EC 3.4.25.-) compare
GFF4417 -1.0 -2.5 Methionine ABC transporter ATP-binding protein compare
GFF3618 -1.0 -3.1 Purine nucleotide synthesis repressor compare
GFF4354 -1.0 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF1411 -1.0 -2.8 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF4653 -1.0 -1.6 TolA protein compare
GFF4145 -0.9 -1.3 hypothetical protein compare
GFF4720 -0.9 -2.2 [NiFe] hydrogenase nickel incorporation protein HypA compare
GFF3749 -0.9 -3.2 Nucleoid-associated protein NdpA compare
GFF2698 -0.9 -4.6 Exoribonuclease II (EC 3.1.13.1) compare
GFF2954 -0.9 -4.4 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF3151 -0.9 -4.8 Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1 compare
GFF2119 -0.9 -1.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF4861 -0.9 -2.0 L-fucose mutarotase compare
GFF2573 -0.9 -2.1 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF357 -0.9 -1.9 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF3453 -0.9 -1.3 Periplasmic chorismate mutase I precursor (EC 5.4.99.5) compare
GFF387 -0.9 -1.3 Lipopolysaccharide core biosynthesis protein RfaZ compare
GFF2537 -0.8 -1.2 hypothetical protein compare
GFF1383 -0.8 -1.8 FIG00639790: hypothetical protein compare
GFF3975 -0.8 -0.6 hypothetical protein compare
GFF1885 -0.8 -2.9 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF2517 -0.8 -0.7 [NiFe] hydrogenase nickel incorporation HybF-like protein compare
GFF4010 -0.8 -0.9 Flagellar motor switch protein FliN compare
GFF360 -0.8 -1.1 hypothetical protein compare
GFF3830 -0.8 -0.6 Uncharacterized protein YehA precursor compare
GFF3417 -0.8 -3.3 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
GFF339 -0.8 -2.3 YqeJ protein compare
GFF192 -0.8 -2.9 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF792 -0.8 -0.7 hypothetical protein compare
GFF3246 -0.8 -3.4 ATP-dependent protease La (EC 3.4.21.53) Type II compare
GFF2620 -0.8 -0.8 FIG01045674: hypothetical protein compare
GFF3395 -0.8 -0.7 Putative outer membrane protein compare
GFF4688 -0.8 -1.5 Phage tail assembly protein I compare
GFF4232 -0.8 -2.3 Putative fimbrial chaperone compare
GFF4865 -0.8 -3.8 Glycine cleavage system transcriptional activator GcvA compare
GFF2398 -0.8 -0.9 FIG00640156: hypothetical protein compare
GFF826 -0.8 -2.0 GTP-binding protein HflX compare
GFF4026 -0.8 -1.4 Flagellar biosynthesis protein FliT compare
GFF517 -0.8 -3.5 Oligopeptidase A (EC 3.4.24.70) compare
GFF1719 -0.7 -1.8 ATP synthase protein I compare
GFF190 -0.7 -2.3 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF4639 -0.7 -1.5 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF1234 -0.7 -1.1 hypothetical protein compare
GFF3877 -0.7 -1.0 GDP-mannose mannosyl hydrolase (EC 3.6.1.-) compare
GFF2313 -0.7 -3.9 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF1950 -0.7 -1.3 Chorismate synthase (EC 4.2.3.5) compare
GFF4652 -0.7 -1.4 Tol biopolymer transport system, TolR protein compare
GFF2867 -0.7 -0.6 hypothetical protein compare
GFF4128 -0.7 -1.8 hypothetical protein compare
GFF1714 -0.7 -1.5 Regulatory protein AsnC compare
GFF1584 -0.7 -1.4 Ribonucleotide reduction protein NrdI compare
GFF3558 -0.7 -1.3 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF3150 -0.7 -2.8 UPF0441 protein ygiB compare
GFF3236 -0.7 -3.0 Dihydroorotate dehydrogenase (EC 1.3.3.1) compare
GFF1408 -0.7 -2.5 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF645 -0.7 -0.8 Membrane protein associated with oxaloacetate decarboxylase compare
GFF3533 -0.7 -1.3 FIG00638687: hypothetical protein compare
GFF3324 -0.7 -0.7 putative periplasmic protein compare
GFF1385 -0.7 -0.8 hypothetical protein compare
GFF2635 -0.7 -0.7 Putative uncharacterized protein ydbL, may be related to amine metabolism compare
GFF4460 -0.7 -1.5 Putative inner membrane protein compare
GFF994 -0.7 -1.5 hypothetical protein compare
GFF3603 -0.7 -1.4 Secretion system apparatus protein SsaM compare
GFF3258 -0.7 -2.0 LSU m5C1962 methyltransferase RlmI compare
GFF160 -0.7 -2.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF2845 -0.7 -1.7 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF4619 -0.7 -0.8 hypothetical protein compare
GFF4234 -0.7 -1.0 Possible transmembrane regulator compare
GFF1554 -0.7 -1.4 Putative transcriptional regulator compare
GFF1774 -0.7 -2.2 Cytochrome c551 peroxidase (EC 1.11.1.5) compare
GFF3386 -0.6 -1.9 YcfF/hinT protein: a purine nucleoside phosphoramidase compare
GFF2889 -0.6 -4.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
GFF3050 -0.6 -1.1 UPF0301 protein YqgE compare
GFF4561 -0.6 -1.7 FIG002095: hypothetical protein compare
GFF705 -0.6 -1.9 Glutamate transport membrane-spanning protein compare
GFF2166 -0.6 -3.7 Exopolyphosphatase (EC 3.6.1.11) compare
GFF1792 -0.6 -1.0 Spermidine export protein MdtJ compare
GFF1910 -0.6 -2.0 Putative Nudix hydrolase YfcD (EC 3.6.-.-) compare
GFF2221 -0.6 -3.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF1777 -0.6 -1.8 Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.99.-) compare
GFF4585 -0.6 -2.7 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
GFF881 -0.6 -3.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
GFF2864 -0.6 -0.9 Mobile element protein compare
GFF2410 -0.6 -1.7 Mlr7403 protein compare
GFF1685 -0.6 -0.9 FIG01045540: hypothetical protein compare
GFF3463 -0.6 -0.8 FIG00638667: hypothetical protein compare
GFF2695 -0.6 -2.2 Putative inner membrane protein compare
GFF3543 -0.6 -2.7 Electron transfer flavoprotein, alpha subunit compare
GFF4772 -0.6 -0.7 hypothetical protein compare
GFF4087 -0.6 -0.9 Mobile element protein compare
GFF3583 -0.6 -0.9 Type III secretion protein SsaB compare
GFF4350 -0.6 -0.4 hypothetical protein compare
GFF2967 -0.6 -1.4 ClpXP protease specificity-enhancing factor / Stringent starvation protein B compare
GFF2202 -0.6 -1.7 hypothetical protein compare
GFF236 -0.6 -0.6 FIG00545237: hypothetical protein compare
GFF2040 -0.6 -1.1 FIG074102: hypothetical protein compare
GFF1041 -0.6 -3.1 radical activating enzyme compare
GFF4850 -0.6 -2.4 Decarboxylase family protein compare
GFF1472 -0.6 -1.1 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF706 -0.6 -2.2 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
GFF3123 -0.6 -1.0 hypothetical protein compare
GFF2630 -0.6 -1.8 Cytochrome b(561) compare
GFF3387 -0.6 -1.4 YcfL protein: an outer membrane lipoprotein that is part of a salvage cluster compare
GFF729 -0.6 -2.3 Dipeptide transport system permease protein DppB in protein degradation cluster compare
GFF1914 -0.6 -0.9 Cell division inhibitor compare
GFF4125 -0.6 -0.8 Mobile element protein compare
GFF4206 -0.6 -1.5 putative cytoplasmic protein compare
GFF852 -0.6 -2.4 L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F) compare
GFF3484 -0.6 -1.7 FIG002003: Protein YdjA compare
GFF4192 -0.6 -1.4 DNA-binding protein HU-alpha compare
GFF1416 -0.6 -3.1 Zinc uptake regulation protein ZUR compare
GFF1961 -0.6 -2.7 Phosphoglycerate transport system transcriptional regulatory protein PgtA compare
GFF1673 -0.6 -1.5 Flagellar transcriptional activator FlhD compare
GFF3617 -0.6 -1.3 LysR-family transcriptional regulator YdhB compare
GFF1947 -0.6 -1.0 Putative transporting ATPase compare
GFF4360 -0.6 -1.6 Queuosine Biosynthesis QueC ATPase compare
GFF4749 -0.5 -2.4 Type III secretion host injection protein (YopB) compare
GFF3430 -0.5 -2.0 Periplasmic lysozyme inhibitor of c-type lysozyme compare
GFF321 -0.5 -2.2 Putative secreted protein compare
GFF876 -0.5 -3.4 UPF0131 protein YtfP compare
GFF2688 -0.5 -1.8 Peptide transport periplasmic protein SapA compare
GFF4110 -0.5 -3.1 Fermentation/respiration switch protein compare
GFF1890 -0.5 -3.0 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF4356 -0.5 -1.5 DNA-binding protein HU-beta compare
GFF20 -0.5 -1.8 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF753 -0.5 -1.3 Glutaredoxin 1 compare
GFF1256 -0.5 -1.4 Chromosome (plasmid) partitioning protein ParA compare
GFF2592 -0.5 -0.9 secreted effector protein compare
GFF3537 -0.5 -1.4 FIG137360: hypothetical protein compare
GFF1356 -0.5 -0.9 Acetate operon repressor compare
GFF2563 -0.5 -1.0 Outer membrane porin protein NmpC precursor compare
GFF3510 -0.5 -2.0 L-cystine uptake protein TcyP compare
GFF1641 -0.5 -0.7 hypothetical protein compare
GFF110 -0.5 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF2948 -0.5 -1.3 PTS system nitrogen-specific IIA component, PtsN compare
GFF716 -0.5 -2.2 L,D-transpeptidase YbiS compare
GFF4669 -0.5 -0.8 Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-) compare
GFF1174 -0.5 -1.7 FIG00642834: hypothetical protein compare
GFF2758 -0.5 -0.7 FIG01045187: hypothetical protein compare
GFF1659 -0.5 -1.9 Flagellar protein FlhE compare
GFF4288 -0.5 -2.8 AroM protein compare
GFF2832 -0.5 -0.7 PTS system, mannose-specific IIC component (EC 2.7.1.69) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6F2_phage across organisms