Experiment set3IT085 for Agrobacterium fabrum C58

Compare to:

spermidine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu2040 -3.7 -8.3 phosphoserine phosphatase compare
Atu3706 -3.4 -10.8 D-3-phosphoglycerate dehydrogenase compare
Atu0601 -3.4 -11.2 oxidoreductase compare
Atu0039 -3.4 -2.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0035 -2.9 -10.5 phosphoenolpyruvate carboxykinase compare
Atu1359 -2.8 -2.0 dnaK deletion suppressor protein compare
Atu0041 -2.6 -3.1 glutamine amidotransferase compare
Atu1446 -2.6 -3.6 two component response regulator compare
Atu0043 -2.5 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu3469 -2.5 -4.6 phosphoglyceromutase compare
Atu3707 -2.4 -4.1 phosphoserine aminotransferase compare
Atu1030 -2.4 -2.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0099 -2.4 -9.5 prephenate dehydratase compare
Atu5142 -2.4 -2.2 hypothetical protein compare
Atu2289 -2.4 -14.4 anthranilate synthase component I and II compare
Atu4773 -2.4 -2.8 two component response regulator compare
Atu1750 -2.3 -7.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu1620 -2.3 -14.0 triosephosphate isomerase compare
Atu0537 -2.3 -7.1 histidinol dehydrogenase compare
Atu1687 -2.3 -9.4 anthranilate phosphoribosyltransferase compare
Atu2036 -2.2 -12.8 acetolactate synthase III, large subunit compare
Atu1205 -2.2 -11.6 threonine dehydratase compare
Atu5088 -2.2 -2.9 hypothetical protein compare
Atu2650 -2.1 -9.7 glycerol-3-phosphate dehydrogenase compare
Atu3740 -2.1 -9.6 fructose bisphosphate aldolase compare
Atu0017 -2.1 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0678 -2.1 -5.5 histidyl-tRNA synthetase compare
Atu3369 -2.0 -6.4 hypothetical protein compare
Atu1688 -2.0 -4.7 indole-3-glycerol-phosphate synthase compare
Atu2718 -2.0 -8.0 homoserine O-succinyltransferase compare
Atu3739 -2.0 -3.0 phosphoglycerate kinase compare
Atu0322 -1.9 -6.9 enoyl CoA hydratase compare
Atu1844 -1.9 -3.5 Phosphoribosylformylglycinamidine synthetase compare
Atu3885 -1.9 -7.3 inositol monophosphatase compare
Atu1845 -1.9 -6.4 phosphoribosylformylglycinamidine synthase I compare
Atu0432 -1.9 -6.7 O-succinylhomoserine sulfhydrylase compare
Atu0332 -1.9 -8.9 RNA polymerase sigma-54 factor compare
Atu0611 -1.9 -6.0 ABC transporter, membrane spanning protein conserved
Atu8087 -1.8 -1.8 putative peptidoglycan binding protein compare
Atu1850 -1.8 -5.5 phosphoribosylformylglycinamidine synthetase II compare
Atu0679 -1.8 -6.8 ATP phosphoribosyltransferase compare
Atu2791 -1.8 -8.3 3-isopropylmalate dehydrogenase compare
Atu4711 -1.8 -8.0 two component sensor kinase compare
Atu0486 -1.7 -7.0 dihydroorotate dehydrogenase compare
Atu1445 -1.7 -5.0 two component sensor kinase compare
Atu1141 -1.7 -7.4 Phosphoribosylglycinamide synthetase compare
Atu0298 -1.7 -6.4 orotidine 5 compare
Atu0400 -1.7 -4.3 orotate phosphoribosyltransferase compare
Atu2709 -1.7 -11.6 3-isopropylmalate dehydratase, large subunit compare
Atu2264 -1.7 -7.9 2-isopropylmalate synthase compare
Atu0876 -1.7 -2.4 superoxide dismutase compare
Atu4317 -1.5 -2.7 TetR family transcriptional regulator compare
Atu1308 -1.5 -6.6 aspartate carbamoyl transferase catalytic subunit compare
Atu1588 -1.5 -6.6 homoserine dehydrogenase compare
Atu3293 -1.5 -6.6 D-amino acid dehydrogenase small subunit compare
Atu0602 -1.5 -7.8 glutamine synthetase compare
Atu0038 -1.5 -5.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0030 -1.5 -1.8 phosphocarrier protein HPr compare
Atu0346 -1.5 -2.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4346 -1.5 -9.1 hypothetical protein compare
Atu2747 -1.5 -8.0 hypothetical protein compare
Atu0647 -1.5 -4.3 phosphoribosylamine--glycine ligase compare
Atu0399 -1.5 -6.6 dihydroorotase compare
Atu1307 -1.4 -5.7 dihydroorotase compare
Atu5124 -1.4 -7.2 glutamate-1-semialdehyde aminotransferase compare
Atu1075 -1.4 -5.2 amidophosphoribosyltransferase compare
Atu3755 -1.4 -5.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3754 -1.3 -3.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4610 -1.3 -8.7 sugar nucleotide epimerase/dehydratase compare
Atu0610 -1.3 -6.9 ABC transporter, nucleotide binding/ATPase protein conserved
Atu2439 -1.3 -2.0 hypothetical protein compare
Atu2379 -1.3 -7.1 phosphomannomutase compare
Atu0609 -1.3 -6.1 ABC transporter, substrate binding protein (putrescine) compare
Atu2207 -1.3 -3.1 two component sensor kinase compare
Atu1140 -1.2 -4.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4505 -1.2 -6.1 LacI family transcriptional regulator compare
Atu0769 -1.2 -2.1 protoheme IX farnesyltransferase compare
Atu6156 -1.2 -3.1 virA/G regulated gene compare
Atu2163 -1.2 -1.4 hypothetical protein compare
Atu4173 -1.1 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu3763 -1.1 -2.2 hypothetical protein compare
Atu2790 -1.1 -2.3 3-isopropylmalate dehydratase, small subunit compare
Atu0040 -1.1 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1455 -1.1 -2.1 hypothetical protein compare
Atu5173 -1.0 -1.6 dehydrogenase compare
Atu0986 -1.0 -1.5 hypothetical protein compare
Atu1002 -1.0 -4.9 Aminotransferase class-III compare
Atu1254 -1.0 -1.2 transcriptional regulator, ArsR family compare
Atu2155 -1.0 -7.9 methionine synthase compare
Atu3730 -1.0 -1.5 hypothetical protein compare
Atu2115 -1.0 -6.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu8162 -1.0 -1.6 hypothetical protein compare
Atu1470 -1.0 -1.1 Camphor resistance protein compare
Atu8138 -1.0 -1.8 hypothetical protein compare
Atu2376 -1.0 -1.2 hypothetical protein compare
Atu5513 -1.0 -0.8 cold shock protein compare
Atu0723 -0.9 -1.8 FAD dependent oxidoreductase compare
Atu4608 -0.9 -6.9 hypothetical protein compare
Atu4217 -0.9 -1.5 TetR family transcriptional regulator compare
Atu0194 -0.9 -5.0 oxidoreductase compare
Atu4609 -0.9 -6.4 glycosyltransferase compare
Atu6120 -0.9 -2.4 HNS-type DNA binding protein compare
Atu0026 -0.9 -1.0 hypothetical protein compare
Atu3505 -0.8 -4.0 3-hydroxyisobutyryl-CoA hydrolase compare
Atu2139 -0.8 -3.1 aldehyde dehydrogenase compare
Atu2140 -0.8 -3.3 hypothetical protein compare
Atu0184 -0.8 -1.6 glucokinase compare
Atu2442 -0.8 -1.4 hypothetical protein compare
Atu8088 -0.8 -1.3 hypothetical protein compare
Atu2710 -0.8 -4.1 hypothetical protein compare
Atu3329 -0.8 -4.6 beta alanine--pyruvate transaminase compare
Atu0361 -0.8 -1.1 transcriptional regulator compare
Atu1457 -0.8 -2.9 hypothetical protein compare
Atu0612 -0.8 -1.6 ABC transporter, membrane spanning protein compare
Atu3008 -0.8 -0.9 hypothetical protein compare
Atu6153 -0.8 -1.9 conserved hypothetical protein compare
Atu3353 -0.8 -5.1 mannose-1-phosphate guanylyltransferase compare
Atu0846 -0.8 -2.7 transcriptional regulator, MarR family compare
Atu0544 -0.8 -2.1 hypothetical protein compare
Atu8191 -0.7 -1.3 hypothetical protein compare
Atu0189 -0.7 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu2138 -0.7 -4.1 dehydrogenase compare
Atu5430 -0.7 -0.7 hypothetical protein compare
Atu3572 -0.7 -4.3 transcriptional regulator compare
Atu4068 -0.7 -1.2 sarcosine oxidase delta subunit compare
Atu0190 -0.7 -3.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1589 -0.7 -2.9 aminotransferase, class I compare
Atu8061 -0.7 -2.0 hypothetical protein compare
Atu0971 -0.7 -2.4 two component sensor kinase compare
Atu8053 -0.7 -1.2 hypothetical protein compare
Atu2141 -0.7 -2.6 hypothetical protein compare
Atu8034 -0.7 -1.5 hypothetical protein compare
Atu3908 -0.7 -4.1 GntR family transcriptional regulator compare
Atu1364 -0.7 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3298 -0.7 -5.0 C4-dicarboxylate transporter DctA compare
Atu5486 -0.7 -2.0 hypothetical protein compare
Atu1581 -0.7 -1.2 hypothetical protein compare
Atu3075 -0.6 -4.2 TetR family transcriptional regulator compare
Atu1774 -0.6 -3.7 ABC transporter, substrate binding protein (peptide) compare
Atu0422 -0.6 -0.8 ABC transporter, membrane spanning protein compare
Atu3291 -0.6 -3.2 Lpr family transcriptional regulator compare
Atu6014 -0.6 -2.5 6b protein compare
Atu5448 -0.6 -2.3 hypothetical protein compare
Atu3297 -0.6 -4.2 two component sensor kinase for C4-dicarboxylate transport compare
Atu2428 -0.6 -3.4 exopolysaccharide production protein PssB compare
Atu0368 -0.6 -2.9 tRNA pseudouridine synthase I compare
Atu4166 -0.6 -1.4 UDP-glucose 4-epimerase compare
Atu0029 -0.6 -2.7 S-adenosylhomocysteine hydrolase compare
Atu3296 -0.6 -3.6 two component response regulator for C4-dicarboxylate transport compare
Atu4096 -0.6 -3.3 nicotinate-nucleotide pyrophosphorylase compare
Atu1456 -0.6 -4.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2267 -0.6 -2.7 hypothetical protein compare
Atu2758 -0.6 -4.1 ammonium transporter compare
Atu8047 -0.6 -1.3 hypothetical protein compare
Atu3311 -0.6 -4.9 phosphomannose isomerase compare
Atu0193 -0.6 -3.1 glutamine synthetase compare
Atu2200 -0.6 -2.1 cold shock protein compare
Atu1464 -0.6 -2.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu1573 -0.6 -0.8 hypothetical protein compare
Atu1739 -0.6 -2.7 permease compare
Atu0824 -0.6 -0.8 hypothetical protein compare
Atu1439 -0.6 -1.3 hypothetical protein compare
Atu5010 -0.6 -1.3 hypothetical protein compare
Atu4893 -0.6 -2.1 hypothetical protein compare
Atu2235 -0.6 -1.4 hypothetical protein compare
Atu4897 -0.6 -1.0 hypothetical protein compare
Atu5037 -0.6 -2.3 hypothetical protein compare
Atu6123 -0.6 -1.2 conserved hypothetical protein compare
Atu3265 -0.5 -2.0 hypothetical protein compare
Atu4702 -0.5 -3.2 GntR family transcriptional regulator compare
Atu0357 -0.5 -3.6 phosphate starvation inducible protein compare
Atu3122 -0.5 -2.3 cold shock protein compare
Atu2783 -0.5 -2.7 acetyltransferase compare
Atu2678 -0.5 -2.2 2'-5' RNA ligase compare
Atu1766 -0.5 -2.5 hypothetical protein compare
Atu0887 -0.5 -2.6 acetyltransferase compare
Atu4148 -0.5 -2.3 UDP-glucuronic acid epimerase compare
Atu4502 -0.5 -3.0 cobalamin synthesis protein compare
Atu3912 -0.5 -3.0 hypothetical protein compare
Atu0845 -0.5 -1.7 hypothetical protein compare
Atu1503 -0.5 -0.8 hypothetical protein compare
Atu1358 -0.5 -2.3 hypothetical protein compare
Atu4061 -0.5 -1.3 exopolysaccharide production repressor protein compare
Atu3486 -0.5 -1.8 DeoR family transcriptional regulator compare
Atu1462 -0.5 -3.4 glycine cleavage system protein P2 compare
Atu1159 -0.5 -2.8 arginine-tRNA-protein transferase compare
Atu4055 -0.5 -1.8 endo-1,3-1,4-beta-glycanase compare
Atu3634 -0.5 -2.5 penicillin-binding protein dacf precursor compare
Atu0977 -0.5 -1.6 serine protease DO-like protease compare
Atu0536 -0.5 -3.2 hypothetical protein compare
Atu2812 -0.5 -2.1 hypothetical protein compare
Atu0809 -0.5 -1.0 hypothetical protein compare
Atu1123 -0.5 -2.3 hypothetical protein compare
Atu0135 -0.5 -1.1 uracil phosphoribosyltransferase compare
Atu3799 -0.5 -3.0 GntR family transcriptional regulator compare
Atu4075 -0.5 -2.3 glycogen synthase compare
Atu3286 -0.5 -2.8 ABC transporter permease compare
Atu5205 -0.5 -1.6 hypothetical protein compare
Atu3913 -0.5 -2.2 biotin carboxylase compare
Atu1028 -0.5 -1.5 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source spermidine in Agrobacterium fabrum C58

For nitrogen source spermidine across organisms