Experiment set3IT084 for Pseudomonas putida KT2440

Compare to:

LB with 3-methyl-1-butanol 0.4 vol%

200 most important genes:

  gene name fitness t score description  
PP_4532 -3.5 -2.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0164 -3.4 -7.8 conserved protein of unknown function compare
PP_4799 -3.3 -3.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0888 -3.1 -3.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1598 -3.1 -5.9 regulatory intramembrane protein RIP zinc protease compare
PP_5706 -3.0 -2.9 Sec translocation complex - SecG subunit compare
PP_1734 -3.0 -2.9 Probable septum site-determining protein MinC compare
PP_0218 -2.9 -10.5 Sensory box protein compare
PP_4937 -2.7 -3.7 toluene tolerance protein compare
PP_1898 -2.6 -2.5 MotA/TolQ/ExbB proton channel family protein compare
PP_4942 -2.4 -3.2 conserved protein of unknown function compare
PP_1568 -2.4 -2.0 conserved protein of unknown function compare
PP_5008 -2.3 -2.0 Poly granule-associated protein compare
PP_4482 -2.3 -4.2 Transcriptional regulator, AraC family compare
PP_3880 -2.2 -2.1 conserved exported protein of unknown function compare
PP_4902 -2.2 -2.9 Oligoribonuclease compare
PP_1384 -2.2 -8.6 Probable efflux pump outer membrane protein TtgC compare
PP_3392 -2.1 -2.6 conserved protein of unknown function compare
PP_5309 -2.1 -4.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5095 -2.0 -1.9 pyrroline-5-carboxylate reductase compare
PP_0246 -2.0 -2.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_2307 -1.9 -2.6 conserved protein of unknown function compare
PP_4362 -1.9 -4.5 conserved protein of unknown function compare
PP_1216 -1.8 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2884 -1.8 -6.7 XRE family transcriptional regulator compare
PP_0846 -1.8 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_5146 -1.8 -7.9 RNA pyrophosphohydrolase compare
PP_2356 -1.7 -8.2 putative Phytochrome family protein compare
PP_5475 -1.7 -2.0 conserved protein of unknown function compare
PP_3649 -1.6 -3.9 Transcriptional regulator, GntR family compare
PP_5328 -1.6 -2.8 putative phosphate transport system permease protein compare
PP_2908 -1.6 -4.2 DNA-binding transcriptional repressor compare
PP_0346 -1.6 -7.9 putative Heptose kinase WapQ compare
PP_4696 -1.6 -4.2 Nitrogen regulation protein NR(I) compare
PP_1217 -1.6 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1366 -1.6 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_4880 -1.6 -6.8 exoribonuclease R compare
PP_5017 -1.6 -1.5 Sec-independent protein translocase protein TatB compare
PP_4804 -1.5 -2.5 RlpA-like lipoprotein compare
PP_1385 -1.5 -9.3 Probable efflux pump membrane transporter TtgB compare
PP_0339 -1.5 -3.9 Pyruvate dehydrogenase E1 component compare
PP_0719 -1.5 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0345 -1.5 -3.2 putative Heptose kinase WapP compare
PP_1468 -1.5 -2.1 Tyrosine recombinase XerD compare
PP_2136 -1.5 -3.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2337 -1.5 -2.5 aconitate isomerase compare
PP_4697 -1.4 -2.6 poly(A) polymerase compare
PP_0691 -1.4 -2.8 Glutamate 5-kinase compare
PP_4004 -1.4 -3.5 DNA translocase FtsK compare
PP_5090 -1.4 -2.2 putative cell division protein compare
PP_1987 -1.4 -2.2 Methlytransferase, UbiE/COQ5 family compare
PP_0593 -1.4 -1.2 putative ribosome-binding factor compare
PP_1215 -1.4 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_5350 -1.4 -2.9 Transcriptional regulator, RpiR family compare
PP_2378 -1.3 -1.7 Fe/S biogenesis protein NfuA compare
PP_2137 -1.3 -3.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_3866 -1.3 -2.4 conserved protein of unknown function compare
PP_1386 -1.3 -5.2 Probable efflux pump periplasmic linker TtgA compare
PP_3481 -1.3 -1.6 conserved exported protein of unknown function compare
PP_3899 -1.3 -2.4 conserved protein of unknown function, hicB family compare
PP_3770 -1.2 -2.3 conserved protein of unknown function compare
PP_2304 -1.2 -5.5 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_2144 -1.2 -2.8 Transcriptional regulator, TetR family compare
PP_5571 -1.2 -1.4 conserved protein of unknown function compare
PP_4961 -1.2 -2.1 putative Lipoprotein compare
PP_1322 -1.2 -1.7 putative Lipoprotein compare
PP_1344 -1.2 -1.3 conserved protein of unknown function compare
PP_0855 -1.2 -2.3 conserved protein of unknown function compare
PP_1695 -1.1 -6.3 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_4549 -1.1 -6.5 long-chain-fatty-acid/CoA ligase compare
PP_0435 -1.1 -6.1 Peptidase, M23/M37 family compare
PP_0753 -1.1 -4.8 putative Lipoprotein compare
PP_1553 -1.1 -2.1 conserved protein of unknown function compare
PP_t10 -1.1 -1.1 tRNA-Pro compare
PP_2336 -1.1 -2.7 aconitate hydratase 1 compare
PP_1410 -1.1 -1.4 conserved protein of unknown function compare
PP_t49 -1.1 -3.3 tRNA-Met compare
PP_5533 -1.0 -1.4 conserved protein of unknown function compare
PP_2414 -1.0 -2.4 conserved exported protein of unknown function compare
PP_0630 -1.0 -1.1 DNA gyrase inhibitor YacG compare
PP_4824 -1.0 -3.9 Sensor histidine kinase/response regulator compare
PP_1733 -1.0 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4803 -1.0 -5.4 D-alanyl-D-alanine carboxypeptidase compare
PP_4682 -1.0 -2.8 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_4236 -1.0 -2.6 putative Thiol:disulfide interchange protein dsbE compare
PP_1938 -1.0 -2.0 conserved protein of unknown function compare
PP_5230 -1.0 -2.5 Tyrosine recombinase XerC compare
PP_2354 -1.0 -5.6 Sensory box histidine kinase/response regulator compare
PP_4378 -1.0 -7.6 flagellin, filament structural protein compare
PP_4130 -1.0 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2253 -1.0 -1.7 Transcriptional regulator, GntR family compare
PP_5525 -1.0 -2.9 conserved exported protein of unknown function compare
PP_2160 -1.0 -2.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_4124 -1.0 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_1036 -1.0 -4.0 membrane-bound lytic murein transglycosylase F compare
PP_1153 -1.0 -2.3 putative lipoprotein compare
PP_1055 -0.9 -1.2 Type II secretion pathway protein GspN compare
PP_4131 -0.9 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_3048 -0.9 -2.3 conserved protein of unknown function compare
PP_5109 -0.9 -4.7 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_0833 -0.9 -1.3 queuine tRNA-ribosyltransferase compare
PP_5507 -0.9 -2.3 protein of unknown function compare
PP_4120 -0.9 -2.0 NADH-quinone oxidoreductase subunit B compare
PP_2999 -0.9 -1.1 Glyoxalase family protein compare
PP_1078 -0.9 -4.1 putative ABC transporter, ATP-binding protein compare
PP_4475 -0.9 -4.1 succinylglutamate desuccinylase compare
PP_4833 -0.9 -3.2 SURF1 domain protein compare
PP_0757 -0.9 -3.8 conserved protein of unknown function compare
PP_5473 -0.9 -1.6 putative transcriptional regulator, LuxR family compare
PP_3541 -0.9 -1.1 Transporter, MgtC family compare
PP_0938 -0.9 -4.4 conserved protein of unknown function compare
PP_3307 -0.9 -1.7 conserved protein of unknown function compare
PP_4581 -0.9 -2.4 putative amidotransferase compare
PP_4609 -0.9 -3.4 conserved membrane protein of unknown function compare
PP_1176 -0.9 -1.3 conserved protein of unknown function compare
PP_0422 -0.9 -3.7 Indole-3-glycerol phosphate synthase compare
PP_4994 -0.8 -2.5 conserved protein of unknown function compare
PP_4999 -0.8 -1.0 dihydroorotase-like protein compare
PP_4296 -0.8 -1.1 conserved exported protein of unknown function compare
PP_1629 -0.8 -3.0 Protein RecA compare
PP_5248 -0.8 -1.3 putative hydrolase compare
PP_4122 -0.8 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4944 -0.8 -2.2 Carbamoyltransferase compare
PP_2055 -0.8 -2.2 putative isomerase compare
PP_3946 -0.8 -1.1 HTH-type transcriptional repressor NicR compare
PP_3378 -0.8 -1.5 putative 2-ketogluconokinase compare
PP_1986 -0.8 -2.3 3-isopropylmalate dehydratase small subunit compare
PP_0244 -0.8 -2.9 conserved protein of unknown function compare
PP_0794 -0.8 -2.8 1-phosphofructokinase monomer compare
PP_2462 -0.8 -1.8 conserved protein of unknown function compare
PP_1719 -0.8 -4.1 Tail-specific protease prc compare
PP_0401 -0.8 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_4133 -0.8 -1.9 Transcriptional regulator-related protein compare
PP_5161 -0.8 -2.7 putative lysophospholipase compare
PP_4905 -0.8 -3.6 Flagellar motor rotation protein compare
PP_4336 -0.8 -3.6 flagellar motor rotation protein compare
PP_0874 -0.8 -1.8 conserved protein of unknown function compare
PP_5313 -0.8 -1.2 DNA-binding protein HU-alpha compare
PP_3346 -0.8 -2.0 Nickel transporter ATP-binding protein compare
PP_0282 -0.8 -4.2 L-arginine ABC transporter - periplasmic binding subunit compare
PP_1669 -0.8 -3.5 NLP/P60 family protein compare
PP_3898 -0.7 -2.7 conserved protein of unknown function compare
PP_2280 -0.7 -1.1 conserved protein of unknown function compare
PP_4519 -0.7 -5.3 Agglutination protein compare
PP_3248 -0.7 -1.7 Dyp-type peroxidase family protein compare
PP_4317 -0.7 -1.9 conserved protein of unknown function compare
PP_1544 -0.7 -2.1 conserved protein of unknown function compare
PP_5310 -0.7 -2.3 junction-specific ATP-dependent DNA helicase compare
PP_5168 -0.7 -1.2 sulfate/thiosulfate import ATP-binding protein compare
PP_4917 -0.7 -2.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0165 -0.7 -5.4 GGDEF domain protein compare
PP_3902 -0.7 -1.2 conserved protein of unknown function compare
PP_0042 -0.7 -3.0 conserved exported protein of unknown function compare
PP_5218 -0.7 -2.8 DedA family protein compare
PP_2087 -0.7 -1.4 CmpX protein compare
PP_5517 -0.7 -3.3 conserved exported protein of unknown function compare
PP_1208 -0.7 -1.4 conserved protein of unknown function, SlyX family compare
PP_0850 -0.7 -3.0 Dual-specificity RNA methyltransferase RlmN compare
PP_1071 -0.7 -2.4 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_5426 -0.7 -3.1 conserved protein of unknown function compare
PP_3926 -0.7 -1.2 short-chain dehydrogenase compare
PP_0258 -0.7 -2.0 regulator of murein cross-linking compare
PP_5042 -0.7 -2.1 conserved protein of unknown function compare
PP_2475 -0.7 -2.0 Transcriptional regulator, TetR family compare
PP_2525 -0.7 -2.3 conserved protein of unknown function compare
PP_1142 -0.7 -0.9 conserved protein of unknown function compare
PP_3840 -0.7 -1.0 conserved protein of unknown function compare
PP_1079 -0.7 -2.7 Ornithine carbamoyltransferase compare
PP_3916 -0.7 -1.8 conserved protein of unknown function compare
PP_0168 -0.7 -5.9 putative surface adhesion protein compare
PP_3036 -0.7 -2.3 conserved protein of unknown function compare
PP_1864 -0.7 -2.1 conserved protein of unknown function compare
PP_4329 -0.7 -1.7 FlhB domain protein compare
PP_0126 -0.7 -2.5 Cytochrome c4 compare
PP_0065 -0.7 -1.7 NAD-binding component of TrK potassium transporter compare
PP_3532 -0.7 -1.2 Transcriptional regulator, AsnC family compare
PP_1702 -0.7 -2.2 Recombination-associated protein RdgC compare
PP_4724 -0.7 -2.4 Carbamoyl-phosphate synthase small chain compare
PP_1994 -0.7 -0.9 tRNA pseudouridine (38-40)synthase compare
PP_0781 -0.7 -1.4 conserved protein of unknown function compare
PP_1632 -0.7 -1.0 conserved protein of unknown function compare
PP_5289 -0.7 -1.8 Acetylglutamate kinase compare
PP_4754 -0.7 -3.2 Transcriptional regulator, TetR family compare
PP_0504 -0.7 -3.1 Outer membrane protein OprG compare
PP_0432 -0.7 -2.8 N-acetyl-gamma-glutamyl-phosphate reductase 1 compare
PP_5216 -0.7 -1.2 exopolyphosphatase compare
PP_5204 -0.6 -2.6 conserved protein of unknown function compare
PP_4570 -0.6 -3.9 conserved protein of unknown function compare
PP_4582 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_5661 -0.6 -2.2 putative lipoprotein compare
PP_1028 -0.6 -2.2 Transcriptional regulator, LysR family compare
PP_3637 -0.6 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3460 -0.6 -1.4 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_2718 -0.6 -1.1 arsenic resistance transcriptional regulator compare
PP_2848 -0.6 -1.4 urease accessory protein compare
PP_1489 -0.6 -1.3 CheW domain protein compare
PP_5529 -0.6 -1.7 putative epimerase compare
PP_4235 -0.6 -3.5 thiol/disulfide interchange protein 2 compare
PP_1233 -0.6 -1.8 sulfurtransferase compare
PP_3522 -0.6 -1.3 conserved protein of unknown function compare


Specific Phenotypes

For 14 genes in this experiment

For stress 3-methyl-1-butanol in Pseudomonas putida KT2440

For stress 3-methyl-1-butanol across organisms