Experiment set3IT084 for Pseudomonas putida KT2440

Compare to:

LB with 3-methyl-1-butanol 0.4 vol%

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +5.2 20.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_4099 +4.9 44.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +4.9 47.4 Sensor protein GacS compare
PP_1728 +4.6 34.4 conserved membrane protein of unknown function compare
PP_1655 +4.1 6.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4693 +3.5 16.7 RNA polymerase-binding transcription factor DksA compare
PP_4368 +2.8 17.5 flagellar motor switch protein compare
PP_5551 +2.8 18.5 conserved protein of unknown function compare
PP_4354 +2.7 9.1 flagellar export apparatus subunit compare
PP_4369 +2.7 18.0 Flagellar M-ring protein compare
PP_4390 +2.7 18.7 flagellar basal-body rod protein FlgC compare
PP_4383 +2.7 13.2 Flagellar P-ring protein compare
PP_4370 +2.6 14.4 Flagellar hook-basal body complex protein FliE compare
PP_4361 +2.6 20.7 Flagellar hook-length control protein FliK compare
PP_4366 +2.6 21.7 flagellum-specific ATP synthase compare
PP_3024 +2.6 12.6 conserved protein of unknown function compare
PP_0406 +2.6 18.6 Nucleotidyltransferase family protein compare
PP_4388 +2.6 22.2 Flagellar hook protein FlgE compare
PP_4394 +2.6 15.9 flagella basal body P-ring formation protein compare
PP_4352 +2.6 21.8 flagellin export apparatus, substrate specificity protein compare
PP_4365 +2.6 19.0 Flagellar protein FliJ compare
PP_4385 +2.6 16.7 flagellar basal-body rod protein FlgG compare
PP_4384 +2.6 21.2 Flagellar L-ring protein compare
PP_0405 +2.5 22.6 conserved protein of unknown function compare
PP_4358 +2.5 15.9 flagellar synthesis, switching and energizing component compare
PP_4367 +2.5 11.7 Flagellar assembly protein FliH compare
PP_4391 +2.5 14.7 flagellar basal-body rod protein FlgB compare
PP_1355 +2.5 22.4 Muropeptide permease AmpG compare
PP_4356 +2.5 10.0 Flagellar protein FliO compare
PP_4386 +2.5 15.0 flagellar basal-body rod protein FlgF compare
PP_4353 +2.4 17.3 Flagellar biosynthetic protein fliR compare
PP_4344 +2.4 17.6 flagellar export pore protein compare
PP_4726 +2.4 5.0 Chaperone protein DnaJ compare
PP_1764 +2.4 10.4 Phosphoglycolate phosphatase 2 compare
PP_4382 +2.4 18.1 Peptidoglycan hydrolase FlgJ compare
PP_0434 +2.4 18.6 Anhydro-N-acetylmuramic acid kinase compare
PP_4355 +2.3 6.0 flagellar export apparatus subunit compare
PP_2145 +2.3 13.5 beta-N-acetylglucosaminidase compare
PP_1309 +2.3 9.2 conserved exported protein of unknown function compare
PP_4389 +2.3 12.2 Flagellar basal-body rod modification protein FlgD compare
PP_4332 +2.2 7.3 Chemotaxis protein CheW compare
PP_2889 +2.2 10.7 putative Transmembrane regulator PrtR compare
PP_4710 +2.2 15.6 tRNA pseudouridine 55 synthase compare
PP_2223 +2.2 16.2 conserved protein of unknown function compare
PP_4341 +2.2 16.5 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_3821 +2.0 13.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4331 +2.0 9.1 conserved protein of unknown function compare
PP_3627 +1.9 10.7 conserved protein of unknown function compare
PP_4373 +1.9 14.7 Transcriptional regulator FleQ compare
PP_2299 +1.9 5.7 Trigger factor compare
PP_4359 +1.8 6.7 Flagellar protein FliL compare
PP_4392 +1.8 11.5 chemotaxis protein methyltransferase compare
PP_1099 +1.8 6.8 Cold shock protein CapB compare
PP_4477 +1.8 11.0 N-succinylarginine dihydrolase compare
PP_4343 +1.8 5.7 Flagellar biosynthesis protein FlhF compare
PP_1729 +1.8 2.1 conserved protein of unknown function compare
PP_4333 +1.7 6.4 CheW domain protein compare
PP_2222 +1.6 5.4 conserved protein of unknown function compare
PP_0789 +1.6 8.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4334 +1.4 6.2 ParA family protein compare
PP_3957 +1.4 11.7 choline/carnitine/betaine transporter BetTC compare
PP_1075 +1.2 7.8 glycerol kinase compare
PP_0914 +1.2 8.5 GGDEF domain protein compare
PP_1770 +1.2 2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_5597 +1.2 1.8 conserved protein of unknown function compare
PP_4371 +1.2 6.6 two component system AtoC DNA-binding transcriptional activator compare
PP_0685 +1.1 1.9 conserved protein of unknown function compare
PP_1428 +1.1 3.7 Sigma factor AlgU negative regulatory protein compare
PP_4936 +1.1 5.4 O-antigen polymerase compare
PP_1122 +1.1 2.6 OmpA family protein compare
PP_5184 +1.1 6.5 glutamylpolyamine synthetase compare
PP_1780 +1.1 9.7 putative mannosyltransferase compare
PP_2220 +1.1 5.1 C4-type zinc finger protein, DksA/TraR family compare
PP_1799 +1.1 8.5 GDP-mannose 4,6-dehydratase compare
PP_5270 +1.0 4.9 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4338 +1.0 6.3 Chemotaxis histidine kinase CheA compare
PP_4171 +1.0 6.8 conserved exported protein of unknown function compare
PP_4381 +1.0 8.5 Flagellar hook-associated protein FlgK compare
PP_4136 +1.0 1.7 Transcriptional regulator, LuxR family compare
PP_2121 +1.0 2.0 putative Lipoprotein compare
PP_4654 +1.0 7.4 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_4874 +1.0 1.9 50S ribosomal protein L9 compare
PP_3760 +1.0 5.5 putative methyltransferase compare
PP_0232 +1.0 2.0 ATP-binding taurine transporter subunit compare
PP_1204 +1.0 4.2 putative Lipoprotein compare
PP_5546 +1.0 2.5 conserved protein of unknown function compare
PP_1528 +1.0 1.3 conserved protein of unknown function compare
PP_1022 +1.0 3.9 glucose 6-phosphate-1-dehydrogenase compare
PP_4787 +1.0 1.6 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1664 +0.9 3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_0128 +0.9 5.3 conserved protein of unknown function compare
PP_5058 +0.9 5.0 Carboxy-terminal-processing protease compare
PP_3761 +0.9 7.3 Sensor histidine kinase/response regulator compare
PP_0959 +0.9 1.6 phospholipid ABC transporter compare
PP_1912 +0.9 4.1 Phosphate acyltransferase compare
PP_1917 +0.9 3.5 4-amino-4-deoxychorismate lyase compare
PP_4393 +0.9 4.0 putative chemotaxis protein compare
PP_0725 +0.9 3.7 conserved hypothetical TPR repeat protein compare
PP_2249 +0.9 5.6 Methyl-accepting chemotaxis protein PctB compare
PP_1918 +0.9 7.3 septation protein compare
PP_1800 +0.9 5.9 Oxidoreductase Rmd compare
PP_5198 +0.9 1.9 conserved protein of unknown function compare
PP_4939 +0.9 2.8 conserved protein of unknown function compare
PP_4179 +0.9 5.9 Chaperone protein HtpG compare
PP_4478 +0.9 3.9 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_1371 +0.9 4.0 Methyl-accepting chemotaxis protein PctA compare
PP_4551 +0.9 3.2 Hydrolase, alpha/beta fold family compare
PP_4701 +0.8 1.2 glucose-6-phosphate isomerase compare
PP_2864 +0.8 1.9 conserved protein of unknown function compare
PP_3052 +0.8 1.1 conserved protein of unknown function compare
PP_4217 +0.8 7.5 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_0127 +0.8 2.9 Thiol:disulfide interchange protein compare
PP_3434 +0.8 2.5 conserved protein of unknown function compare
PP_4938 +0.8 4.6 putative Glycosyl transferase compare
PP_1110 +0.8 2.7 serine acetyltransferase compare
PP_5053 +0.8 4.5 Protein-export protein SecB compare
PP_1779 +0.8 3.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3374 +0.8 2.9 conserved protein of unknown function compare
PP_0674 +0.8 5.4 ADP/ATP ratio sensor and inhibitor of translation compare
PP_1076 +0.8 3.5 aquaglyceroporin compare
PP_5145 +0.8 6.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3527 +0.8 5.5 Transcriptional regulator, TetR family compare
PP_4785 +0.8 3.2 conserved exported protein of unknown function compare
PP_4798 +0.8 5.8 putative Membrane-bound lytic murein transglycosylase compare
PP_0355 +0.8 2.2 Response regulator compare
PP_5177 +0.8 4.4 spermidine/putrescine ABC transporter - permease subunit compare
PP_5600 +0.8 1.4 conserved protein of unknown function compare
PP_2858 +0.8 2.4 conserved exported protein of unknown function compare
PP_1778 +0.8 3.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1654 +0.8 2.6 cysteine synthase B compare
PP_0340 +0.8 6.0 Glutamate-ammonia-ligase adenylyltransferase compare
PP_1381 +0.8 1.5 4-carboxymuconolactone decarboxylase compare
PP_5491 +0.8 1.9 conserved protein of unknown function with SEC-C motif domain compare
PP_5582 +0.8 1.4 conserved protein of unknown function compare
PP_3002 +0.7 2.8 shikimate dehydrogenase-related enzyme compare
PP_0352 +0.7 3.2 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1789 +0.7 3.1 Hydrolase, haloacid dehalogenase-like family compare
PP_0058 +0.7 6.4 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_0749 +0.7 3.4 conserved exported protein of unknown function compare
PP_1783 +0.7 1.2 dTDP-glucose pyrophosphorylase compare
PP_0484 +0.7 3.1 transporter of an unknown substrate compare
PP_5000 +0.7 1.6 peptidase component of the ATP-dependent HslVU protease compare
PP_4372 +0.7 2.6 Sensory box histidine kinase FleS compare
PP_2046 +0.7 2.7 Transcriptional regulator, LysR family compare
PP_4835 +0.7 1.1 conserved exported protein of unknown function compare
PP_4054 +0.7 2.0 conserved protein of unknown function compare
PP_3415 +0.7 3.9 Transcriptional regulator, LacI family compare
PP_4896 +0.7 4.7 DNA mismatch repair protein MutL compare
PP_2898 +0.7 1.6 conserved exported protein of unknown function compare
PP_2958 +0.7 2.6 Glutaredoxin compare
PP_5674 +0.7 1.3 conserved protein of unknown function compare
PP_5489 +0.7 1.9 conserved protein of unknown function compare
PP_0351 +0.7 3.1 putative Transmembrane sensor protein compare
PP_5106 +0.7 2.8 conserved inner membrane protein compare
PP_0133 +0.7 5.0 Alginate biosynthesis transcriptional regulatory protein AlgB compare
PP_5701 +0.7 1.1 conserved protein of unknown function compare
PP_5381 +0.7 1.8 hypothetical protein compare
PP_2403 +0.7 1.2 Chemotaxis protein CheY compare
PP_0001 +0.6 1.4 probable chromosome-partitioning protein compare
PP_4396 +0.6 1.7 conserved protein of unknown function compare
PP_4980 +0.6 3.9 ATP-dependent RNA helicase compare
PP_2219 +0.6 2.3 conserved protein of unknown function compare
PP_1310 +0.6 1.2 conserved hypothetical protein compare
PP_1871 +0.6 2.4 Protease HtpX compare
PP_3238 +0.6 2.5 putative Transcriptional regulator PyrR compare
PP_2231 +0.6 1.0 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4827 +0.6 4.4 Precorrin-2 C(20)-methyltransferase compare
PP_4829 +0.6 2.4 putative precorrin-3B synthase compare
PP_0697 +0.6 4.6 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_1677 +0.6 2.4 Adenosyl-cobyric acid synthase compare
PP_3766 +0.6 2.4 Lactoylglutathione lyase compare
PP_4555 +0.6 1.1 conserved protein of unknown function compare
PP_4198 +0.6 2.7 OmpA family protein compare
PP_1265 +0.6 1.7 conserved protein of unknown function compare
PP_3758 +0.6 2.6 Response regulator/sensor histidine kinase compare
PP_0591 +0.6 3.4 Adenine deaminase compare
PP_1788 +0.6 1.4 conserved protein of unknown function compare
PP_2740 +0.6 1.8 Transcriptional regulator, MerR family compare
PP_5427 +0.6 2.2 conserved exported protein of unknown function compare
PP_4340 +0.6 1.5 response regulator for chemotactic signal transduction compare
PP_1074 +0.6 1.8 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_3022 +0.6 3.5 Transcriptional regulator, AraC family compare
PP_0048 +0.6 1.1 conserved protein of unknown function compare
PP_4940 +0.6 3.5 Putative glycosyltransferase compare
PP_3693 +0.6 2.6 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0238 +0.6 2.6 alkanesulfonate monooxygenase compare
PP_3026 +0.6 4.7 putative Phage recombinase compare
PP_0117 +0.6 2.7 Zn(2+) ABC transporter - permease subunit compare
PP_3476 +0.6 3.0 Type II secretion system protein G compare
PP_3408 +0.6 1.6 cobalt transporter subunit A compare
PP_5178 +0.6 3.6 spermidine/putrescine ABC transporter - inner membrane subunit compare
PP_0905 +0.6 1.1 conserved exported protein of unknown function compare
PP_4653 +0.6 3.4 adenine:H+ symporter compare
PP_4870 +0.6 1.8 Azurin compare
PP_1113 +0.6 4.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2773 +0.6 0.6 conserved protein of unknown function compare
PP_4406 +0.6 1.6 conserved protein of unknown function compare
PP_1775 +0.6 3.3 Metallo-beta-lactamase family protein compare
PP_3495 +0.6 2.3 tRNA (adenine(22)-N(1))-methyltransferase compare
PP_5322 +0.6 2.7 putative metal ion transporter compare


Specific Phenotypes

For 14 genes in this experiment

For stress 3-methyl-1-butanol in Pseudomonas putida KT2440

For stress 3-methyl-1-butanol across organisms