Experiment set3IT084 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6D2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF267 -4.7 -10.3 Transcriptional activator RfaH compare
GFF20 -3.7 -8.8 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF4601 -3.4 -8.4 Phosphoglucomutase (EC 5.4.2.2) compare
GFF2808 -3.1 -8.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF1832 -2.5 -9.9 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF388 -2.4 -8.5 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF4355 -2.2 -1.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF1830 -2.1 -8.7 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF2213 -2.0 -4.9 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF2047 -2.0 -7.7 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF1768 -2.0 -1.5 hypothetical protein compare
GFF2436 -2.0 -3.6 Iron-sulfur cluster regulator IscR compare
GFF341 -1.9 -1.3 RmbA compare
GFF1334 -1.9 -1.6 Uncharacterized protein YohL compare
GFF2845 -1.7 -4.8 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF4158 -1.7 -1.7 tmRNA-binding protein SmpB compare
GFF3603 -1.7 -3.0 Secretion system apparatus protein SsaM compare
GFF4653 -1.5 -3.2 TolA protein compare
GFF2119 -1.5 -2.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF3528 -1.5 -2.5 Integration host factor alpha subunit compare
GFF1497 -1.5 -2.0 Transcription termination protein NusA compare
GFF1411 -1.4 -5.0 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF4175 -1.4 -3.4 Uncharacterized protein YfiR precursor compare
GFF1584 -1.4 -2.5 Ribonucleotide reduction protein NrdI compare
GFF1502 -1.4 -5.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF4353 -1.4 -3.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF824 -1.3 -2.7 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1920 -1.3 -0.9 hypothetical protein compare
GFF1343 -1.2 -1.2 Attachment invasion locus protein precursor compare
GFF2758 -1.2 -1.5 FIG01045187: hypothetical protein compare
GFF115 -1.2 -3.8 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF4417 -1.2 -2.6 Methionine ABC transporter ATP-binding protein compare
GFF1440 -1.2 -7.7 FIG00638940: hypothetical protein compare
GFF110 -1.1 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF1312 -1.1 -1.7 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF4596 -1.1 -2.4 Ferric uptake regulation protein FUR compare
GFF1699 -1.1 -1.6 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF2906 -1.1 -3.1 Protein yifE compare
GFF2907 -1.1 -4.6 HTH-type transcriptional regulator hdfR compare
GFF4010 -1.0 -2.0 Flagellar motor switch protein FliN compare
GFF4473 -1.0 -1.4 FIG01046818: hypothetical protein compare
GFF746 -1.0 -1.7 Putative permease compare
GFF2220 -1.0 -4.9 Nitrogen regulation protein NR(I) compare
GFF4323 -1.0 -2.5 FIG00553873: hypothetical protein compare
GFF1503 -1.0 -2.7 Lipoprotein nlpI precursor compare
GFF3050 -1.0 -2.4 UPF0301 protein YqgE compare
GFF1869 -1.0 -1.9 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate synthase (EC 4.2.99.20) compare
GFF3248 -1.0 -3.2 Outer membrane protein A precursor compare
GFF1219 -1.0 -1.7 FIG01048676: hypothetical protein compare
GFF4652 -1.0 -1.6 Tol biopolymer transport system, TolR protein compare
GFF2698 -1.0 -5.2 Exoribonuclease II (EC 3.1.13.1) compare
GFF629 -0.9 -1.3 Shikimate kinase I (EC 2.7.1.71) compare
GFF2409 -0.9 -3.6 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF1221 -0.9 -1.4 hypothetical protein compare
GFF1808 -0.9 -3.6 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF4106 -0.9 -2.1 Protein with similarity to RtcB compare
GFF3308 -0.9 -2.6 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase compare
GFF255 -0.9 -1.8 hypothetical protein compare
GFF3618 -0.9 -3.6 Purine nucleotide synthesis repressor compare
GFF752 -0.9 -1.3 Inner membrane protein compare
GFF3324 -0.9 -0.9 putative periplasmic protein compare
GFF3658 -0.9 -2.4 FIG01046987: hypothetical protein compare
GFF2290 -0.9 -1.4 Putative periplasmic protein compare
GFF2311 -0.9 -1.0 Ribonuclease E inhibitor RraA compare
GFF1532 -0.9 -1.8 Transcriptional repressor of aga operon compare
GFF236 -0.9 -0.8 FIG00545237: hypothetical protein compare
GFF1035 -0.9 -4.3 Peptide chain release factor 3 compare
GFF2431 -0.9 -2.0 Chaperone protein HscA compare
GFF3822 -0.8 -2.5 FIG00545237: hypothetical protein compare
GFF3990 -0.8 -1.2 hypothetical protein compare
GFF1076 -0.8 -1.6 Aerobic respiration control protein arcA compare
GFF2733 -0.8 -1.9 Membrane protein YciC, linked to IspA compare
GFF3628 -0.8 -2.3 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
GFF2663 -0.8 -1.0 Thiol peroxidase, Tpx-type (EC 1.11.1.15) compare
GFF4311 -0.8 -2.2 hypothetical protein compare
GFF1662 -0.8 -2.1 Chemotaxis response - phosphatase CheZ compare
GFF3845 -0.8 -2.0 putative cytoplasmic protein compare
GFF2433 -0.8 -3.1 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF1600 -0.8 -2.0 HAD-superfamily hydrolase, subfamily IA compare
GFF4865 -0.8 -3.2 Glycine cleavage system transcriptional activator GcvA compare
GFF3154 -0.8 -2.3 Zinc transporter ZupT compare
GFF3617 -0.8 -1.9 LysR-family transcriptional regulator YdhB compare
GFF4354 -0.8 -1.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF2756 -0.8 -3.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF2200 -0.8 -1.8 Phage CI-like repressor compare
GFF384 -0.8 -1.4 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF4635 -0.8 -1.9 Succinate dehydrogenase cytochrome b-556 subunit compare
GFF3985 -0.8 -0.6 Integrase compare
GFF2952 -0.8 -1.9 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) compare
GFF4519 -0.8 -1.3 Universal stress protein G compare
GFF4096 -0.8 -1.0 FIG01047254: hypothetical protein compare
GFF1977 -0.8 -2.6 Manganese transport protein MntH compare
GFF4766 -0.8 -0.9 Invasion protein invH precursor compare
GFF4806 -0.8 -1.1 FIG01045727: hypothetical protein compare
GFF1234 -0.7 -1.2 hypothetical protein compare
GFF1857 -0.7 -0.9 Polymyxin resistance protein PmrG; Ais protein compare
GFF156 -0.7 -0.9 rRNA small subunit methyltransferase H compare
GFF3819 -0.7 -3.7 Autolysis histidine kinase LytS compare
GFF992 -0.7 -1.3 hypothetical protein compare
GFF4027 -0.7 -0.8 Flagellar biosynthesis protein FliS compare
GFF4683 -0.7 -1.3 Phage minor tail protein compare
GFF1303 -0.7 -0.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF2717 -0.7 -1.9 YciK-like oxidoreductase compare
GFF4798 -0.7 -2.0 Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF2784 -0.7 -1.4 GTP-binding and nucleic acid-binding protein YchF compare
GFF1558 -0.7 -1.2 Tricarboxylate transport transcriptional regulator TctD compare
GFF3848 -0.7 -3.4 Putative inner membrane protein compare
GFF825 -0.7 -1.9 RNA-binding protein Hfq compare
GFF1079 -0.7 -0.7 Homoserine kinase (EC 2.7.1.39) compare
GFF540 -0.7 -3.0 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
GFF517 -0.7 -4.7 Oligopeptidase A (EC 3.4.24.70) compare
GFF1005 -0.7 -1.5 FIG00638610: hypothetical protein compare
GFF1554 -0.7 -1.9 Putative transcriptional regulator compare
GFF3570 -0.7 -0.7 FIG074102: hypothetical protein compare
GFF2607 -0.7 -2.2 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF55 -0.7 -3.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF2937 -0.7 -3.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
GFF121 -0.7 -1.6 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3321 -0.7 -0.9 Minor curlin subunit CsgB, nucleation component of curlin monomers compare
GFF1863 -0.7 -0.8 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF308 -0.7 -2.3 probable membrane protein YPO2654 compare
GFF826 -0.7 -3.0 GTP-binding protein HflX compare
GFF3621 -0.7 -3.1 Glutaredoxin-related protein compare
GFF360 -0.7 -0.9 hypothetical protein compare
GFF2655 -0.7 -1.3 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
GFF4039 -0.7 -2.4 LysR family transcriptional regulator YafC compare
GFF1690 -0.7 -1.2 RNA polymerase sigma factor for flagellar operon compare
GFF2928 -0.7 -2.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF2313 -0.7 -4.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF1072 -0.7 -2.6 Putative fimbrial chaperone protein compare
GFF4140 -0.7 -1.1 putative cytoplasmic protein compare
GFF1885 -0.7 -2.8 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF3444 -0.7 -2.5 Nickel transport ATP-binding protein nikE2 (TC 3.A.1.5.3) compare
GFF2833 -0.7 -1.8 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF3632 -0.6 -1.6 Transcriptional regulator SlyA compare
GFF2563 -0.6 -1.8 Outer membrane porin protein NmpC precursor compare
GFF3311 -0.6 -2.7 FIG00553873: hypothetical protein compare
GFF2430 -0.6 -0.9 Ferredoxin, 2Fe-2S compare
GFF1259 -0.6 -1.8 Error-prone repair protein UmuD compare
GFF3391 -0.6 -2.0 YcfP protein: probably an esterase that is part of a salvage cluster compare
GFF1781 -0.6 -1.5 Putative binding-protein-dependent transport system compare
GFF1256 -0.6 -1.6 Chromosome (plasmid) partitioning protein ParA compare
GFF796 -0.6 -1.2 Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-) compare
GFF2638 -0.6 -1.3 D-lactate dehydrogenase (EC 1.1.1.28) compare
GFF4004 -0.6 -1.4 DsrB protein compare
GFF2028 -0.6 -0.9 Type III secretion and flagellar regulator RtsA compare
GFF2565 -0.6 -2.8 Methyl viologen resistance protein smvA compare
GFF794 -0.6 -1.1 Phage holin compare
GFF1408 -0.6 -1.8 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF3026 -0.6 -2.7 ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter compare
GFF3362 -0.6 -2.2 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF4655 -0.6 -0.9 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF4288 -0.6 -3.7 AroM protein compare
GFF3355 -0.6 -2.0 Flagellar basal-body rod protein FlgC compare
GFF691 -0.6 -3.6 ABC transport system, permease component YbhR compare
GFF1884 -0.6 -1.0 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF4161 -0.6 -2.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
GFF1385 -0.6 -0.8 hypothetical protein compare
GFF2564 -0.6 -1.2 Gfa-like protein compare
GFF3323 -0.6 -0.9 Putative curli production protein CsgC compare
GFF2223 -0.6 -2.0 GTP-binding protein TypA/BipA compare
GFF3150 -0.6 -3.2 UPF0441 protein ygiB compare
GFF2592 -0.6 -1.1 secreted effector protein compare
GFF482 -0.6 -1.6 FIG01047459: hypothetical protein compare
GFF1889 -0.6 -4.0 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF400 -0.6 -0.9 Glutaredoxin 3 (Grx3) compare
GFF2639 -0.6 -1.1 Heat shock protein hslJ compare
GFF753 -0.6 -1.4 Glutaredoxin 1 compare
GFF1416 -0.6 -3.5 Zinc uptake regulation protein ZUR compare
GFF3315 -0.6 -0.9 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF3832 -0.6 -1.1 FIG01045739: hypothetical protein compare
GFF2954 -0.6 -3.8 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF4038 -0.6 -2.6 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
GFF4243 -0.6 -0.5 Probable secreted protein compare
GFF4822 -0.6 -1.1 Queuosine biosynthesis QueD, PTPS-I compare
GFF1806 -0.6 -1.8 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF3825 -0.6 -2.9 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
GFF3252 -0.6 -1.4 Inner membrane protein YccF compare
GFF133 -0.6 -1.9 Type IV fimbrial assembly protein PilC compare
GFF1233 -0.6 -2.7 Transposase compare
GFF3601 -0.6 -2.1 Type III secretion protein SsaK compare
GFF4575 -0.6 -1.3 Magnesium and cobalt efflux protein CorC compare
GFF831 -0.6 -1.6 Nitrite-sensitive transcriptional repressor NsrR compare
GFF3151 -0.6 -2.6 Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1 compare
GFF4042 -0.6 -2.8 SAM-dependent methyltransferase YafE (UbiE paralog) compare
GFF2094 -0.6 -0.7 Putative outer membrane lipoprotein compare
GFF492 -0.6 -3.4 Endoglucanase precursor (EC 3.2.1.4) compare
GFF2045 -0.6 -1.0 hypothetical protein compare
GFF2669 -0.6 -1.9 Putative outer membrane lipoprotein compare
GFF3576 -0.6 -1.6 Tetrathionate reductase two-component response regulator compare
GFF3515 -0.6 -1.0 FIG00637864: hypothetical protein compare
GFF3659 -0.6 -1.2 FIG01045244: hypothetical protein compare
GFF3039 -0.5 -1.3 Putative outer membrane lipoprotein compare
GFF3183 -0.5 -0.8 FIG01046167: hypothetical protein compare
GFF2178 -0.5 -0.9 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
GFF3316 -0.5 -1.4 Inner membrane protein YcdZ compare
GFF2351 -0.5 -3.5 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) compare
GFF3305 -0.5 -2.9 Sialic acid utilization regulator, RpiR family compare
GFF3787 -0.5 -0.7 Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator compare
GFF3417 -0.5 -1.8 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6D2_phage across organisms