Experiment set3IT084 for Agrobacterium fabrum C58

Compare to:

spermidine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu3469 -4.2 -4.0 phosphoglyceromutase compare
Atu2040 -4.1 -7.8 phosphoserine phosphatase compare
Atu3707 -3.9 -5.0 phosphoserine aminotransferase compare
Atu0601 -3.8 -14.5 oxidoreductase compare
Atu1359 -3.5 -2.0 dnaK deletion suppressor protein compare
Atu0041 -3.5 -3.9 glutamine amidotransferase compare
Atu3706 -3.5 -8.9 D-3-phosphoglycerate dehydrogenase compare
Atu0043 -3.3 -4.5 imidazoleglycerol-phosphate dehydratase compare
Atu3739 -3.2 -3.4 phosphoglycerate kinase compare
Atu1030 -3.0 -3.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu5430 -2.9 -1.9 hypothetical protein compare
Atu2036 -2.9 -12.7 acetolactate synthase III, large subunit compare
Atu2790 -2.8 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu1750 -2.7 -5.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1446 -2.6 -3.6 two component response regulator compare
Atu0679 -2.6 -8.5 ATP phosphoribosyltransferase compare
Atu1688 -2.6 -8.0 indole-3-glycerol-phosphate synthase compare
Atu2718 -2.6 -7.4 homoserine O-succinyltransferase compare
Atu0039 -2.6 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0035 -2.5 -8.5 phosphoenolpyruvate carboxykinase compare
Atu1687 -2.5 -9.7 anthranilate phosphoribosyltransferase compare
Atu0099 -2.4 -8.1 prephenate dehydratase compare
Atu2650 -2.4 -12.4 glycerol-3-phosphate dehydrogenase compare
Atu2289 -2.3 -14.5 anthranilate synthase component I and II compare
Atu2791 -2.3 -7.5 3-isopropylmalate dehydrogenase compare
Atu3740 -2.1 -7.8 fructose bisphosphate aldolase compare
Atu3885 -2.0 -7.2 inositol monophosphatase compare
Atu3754 -2.0 -4.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0602 -2.0 -8.7 glutamine synthetase compare
Atu1620 -2.0 -10.2 triosephosphate isomerase compare
Atu1850 -2.0 -4.4 phosphoribosylformylglycinamidine synthetase II compare
Atu1205 -2.0 -10.3 threonine dehydratase compare
Atu3369 -2.0 -9.9 hypothetical protein compare
Atu1075 -1.9 -6.5 amidophosphoribosyltransferase compare
Atu1141 -1.9 -6.8 Phosphoribosylglycinamide synthetase compare
Atu1140 -1.9 -5.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2264 -1.8 -9.0 2-isopropylmalate synthase compare
Atu0086 -1.8 -1.7 ribosome-binding factor A compare
Atu0432 -1.8 -6.6 O-succinylhomoserine sulfhydrylase compare
Atu0298 -1.8 -7.5 orotidine 5 compare
Atu0322 -1.8 -5.3 enoyl CoA hydratase compare
Atu0537 -1.8 -5.6 histidinol dehydrogenase compare
Atu0486 -1.7 -4.4 dihydroorotate dehydrogenase compare
Atu0017 -1.7 -3.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0678 -1.7 -6.2 histidyl-tRNA synthetase compare
Atu4610 -1.7 -9.8 sugar nucleotide epimerase/dehydratase compare
Atu0332 -1.7 -9.0 RNA polymerase sigma-54 factor compare
Atu3755 -1.7 -4.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0399 -1.7 -6.9 dihydroorotase compare
Atu3763 -1.7 -1.6 hypothetical protein compare
Atu1588 -1.6 -9.2 homoserine dehydrogenase compare
Atu1845 -1.6 -4.7 phosphoribosylformylglycinamidine synthase I compare
Atu0030 -1.6 -1.8 phosphocarrier protein HPr compare
Atu2747 -1.6 -10.3 hypothetical protein compare
Atu0647 -1.6 -6.0 phosphoribosylamine--glycine ligase compare
Atu8054 -1.6 -0.6 hypothetical protein compare
Atu0610 -1.6 -7.5 ABC transporter, nucleotide binding/ATPase protein conserved
Atu2709 -1.5 -11.7 3-isopropylmalate dehydratase, large subunit compare
Atu3009 -1.5 -1.8 exopolysaccharide production protein compare
Atu4773 -1.5 -1.7 two component response regulator compare
Atu4711 -1.5 -5.7 two component sensor kinase compare
Atu1163 -1.5 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0346 -1.5 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu8162 -1.4 -2.1 hypothetical protein compare
Atu5501 -1.4 -1.9 hypothetical protein compare
Atu4346 -1.4 -5.4 hypothetical protein compare
Atu4505 -1.4 -7.2 LacI family transcriptional regulator compare
Atu1445 -1.4 -4.0 two component sensor kinase compare
Atu6114 -1.4 -1.5 hypothetical protein compare
Atu0769 -1.4 -1.3 protoheme IX farnesyltransferase compare
Atu1308 -1.3 -3.4 aspartate carbamoyl transferase catalytic subunit compare
Atu0038 -1.3 -5.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2379 -1.3 -6.9 phosphomannomutase compare
Atu5124 -1.3 -6.9 glutamate-1-semialdehyde aminotransferase compare
Atu3293 -1.2 -4.9 D-amino acid dehydrogenase small subunit compare
Atu3468 -1.2 -1.2 hypothetical protein compare
Atu0400 -1.2 -3.8 orotate phosphoribosyltransferase compare
Atu2140 -1.2 -2.8 hypothetical protein compare
Atu6123 -1.2 -2.6 conserved hypothetical protein compare
Atu1774 -1.2 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu0611 -1.2 -3.8 ABC transporter, membrane spanning protein conserved
Atu0609 -1.2 -6.3 ABC transporter, substrate binding protein (putrescine) compare
Atu1844 -1.2 -1.8 Phosphoribosylformylglycinamidine synthetase compare
Atu3496 -1.1 -3.7 hypothetical protein compare
Atu0361 -1.1 -1.7 transcriptional regulator compare
Atu3730 -1.1 -1.1 hypothetical protein compare
Atu5088 -1.1 -1.2 hypothetical protein compare
Atu1685 -1.1 -1.2 hypothetical protein compare
Atu0784 -1.1 -3.6 hypothetical protein compare
Atu1739 -1.1 -3.5 permease compare
Atu4173 -1.1 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu2376 -1.1 -1.3 hypothetical protein compare
Atu4317 -1.1 -2.8 TetR family transcriptional regulator compare
Atu2155 -1.0 -8.1 methionine synthase compare
Atu4890 -1.0 -1.8 IS426 transposase compare
Atu0194 -1.0 -6.0 oxidoreductase compare
Atu1307 -1.0 -4.0 dihydroorotase compare
Atu3505 -1.0 -4.9 3-hydroxyisobutyryl-CoA hydrolase compare
Atu4608 -1.0 -6.5 hypothetical protein compare
Atu1002 -1.0 -4.6 Aminotransferase class-III compare
Atu3329 -0.9 -6.3 beta alanine--pyruvate transaminase compare
Atu4873 -0.9 -4.6 TetR family transcriptional regulator compare
Atu2057 -0.9 -2.7 DNA helicase II compare
Atu5485 -0.9 -1.3 hypothetical protein compare
Atu4609 -0.9 -6.5 glycosyltransferase compare
Atu0040 -0.9 -0.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0612 -0.9 -2.1 ABC transporter, membrane spanning protein compare
Atu0036 -0.9 -2.2 hypothetical protein compare
Atu2207 -0.9 -2.9 two component sensor kinase compare
Atu0690 -0.9 -2.0 hypothetical protein compare
Atu0986 -0.9 -1.2 hypothetical protein compare
Atu0354 -0.9 -1.8 ferric uptake regulator compare
Atu3759 -0.8 -1.5 hypothetical protein compare
Atu0893 -0.8 -3.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu8087 -0.8 -0.6 putative peptidoglycan binding protein compare
Atu2554 -0.8 -1.1 lysyl-tRNA synthetase compare
Atu1629 -0.8 -1.1 transcriptional regulator, ArsR family compare
Atu3008 -0.8 -0.9 hypothetical protein compare
Atu2267 -0.8 -3.2 hypothetical protein compare
Atu0188 -0.8 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2335 -0.8 -1.7 hypothetical protein compare
Atu1810 -0.8 -1.1 hypothetical protein compare
Atu5169 -0.8 -1.4 type IV secretion protein AvhB8 compare
Atu2115 -0.8 -4.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu5115 -0.8 -1.0 hypothetical protein compare
Atu6159 -0.8 -1.1 hypothetical protein compare
Atu0026 -0.8 -0.9 hypothetical protein compare
Atu1714 -0.8 -1.4 exonuclease III compare
Atu2123 -0.8 -3.4 methylenetetrahydrofolate reductase compare
Atu3298 -0.8 -5.3 C4-dicarboxylate transporter DctA compare
Atu0912 -0.8 -1.1 Na+/H+ antiporter compare
Atu0795 -0.8 -1.1 hypothetical protein compare
Atu5451 -0.8 -0.5 hypothetical protein compare
Atu1149 -0.8 -1.3 adenylate cyclase compare
Atu2827 -0.7 -1.7 hypothetical protein compare
Atu1009 -0.7 -1.8 hypothetical protein compare
Atu0193 -0.7 -2.7 glutamine synthetase compare
Atu1028 -0.7 -1.8 hypothetical protein compare
Atu0524 -0.7 -2.7 transcriptional regulator, LuxR family compare
Atu1737 -0.7 -1.8 hypothetical protein compare
Atu5429 -0.7 -1.9 transcriptional regulator compare
Atu3572 -0.7 -3.5 transcriptional regulator compare
Atu8161 -0.7 -1.0 hypothetical protein compare
Atu1462 -0.7 -5.2 glycine cleavage system protein P2 compare
Atu5517 -0.7 -1.1 hypothetical protein compare
Atu2139 -0.7 -3.2 aldehyde dehydrogenase compare
Atu8138 -0.7 -1.3 hypothetical protein compare
Atu3032 -0.7 -1.6 hypothetical protein compare
Atu0660 -0.7 -3.2 hydrolase compare
Atu3016 -0.7 -2.8 phosphoglyceromutase compare
Atu2439 -0.7 -1.1 hypothetical protein compare
Atu1457 -0.7 -1.4 hypothetical protein compare
Atu4881 -0.7 -3.3 hypothetical protein compare
Atu2812 -0.7 -3.6 hypothetical protein compare
Atu2800 -0.7 -0.9 precorrin-3B C17-methyltransferase compare
Atu3036 -0.7 -2.7 dipeptide ABC transporter permease compare
Atu8082 -0.7 -1.2 hypothetical protein compare
Atu2452 -0.7 -2.2 hypothetical protein compare
Atu0340 -0.7 -1.1 SAM dependent methyltransferase compare
Atu0971 -0.7 -2.6 two component sensor kinase compare
Atu5444 -0.7 -1.6 short-chain dehydrogenase compare
Atu0225 -0.6 -0.7 hypothetical protein compare
Atu3075 -0.6 -4.1 TetR family transcriptional regulator compare
Atu1455 -0.6 -2.4 hypothetical protein compare
Atu3121 -0.6 -0.7 cold shock protein compare
Atu1679 -0.6 -1.5 peptidyl prolyl cis-trans isomerase compare
Atu3353 -0.6 -3.8 mannose-1-phosphate guanylyltransferase compare
Atu0142 -0.6 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu5157 -0.6 -1.0 hypothetical protein compare
Atu1754 -0.6 -1.6 hypothetical protein compare
Atu1456 -0.6 -3.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3023 -0.6 -3.3 sugar ABC transporter permease compare
Atu4615 -0.6 -3.5 glucose-1-phosphate thymidylyltransferase compare
Atu4075 -0.6 -2.6 glycogen synthase compare
Atu0357 -0.6 -3.6 phosphate starvation inducible protein compare
Atu2141 -0.6 -1.7 hypothetical protein compare
Atu0876 -0.6 -0.9 superoxide dismutase compare
Atu2432 -0.6 -0.7 hypothetical protein compare
Atu0533 -0.6 -1.8 putative inhibitor of septum formation compare
Atu6072 -0.6 -2.0 thermophilic desulfurizing enzyme compare
Atu2772 -0.6 -2.7 Invasion protein A compare
Atu6064 -0.6 -2.2 haloalkane dehalogenase compare
Atu3311 -0.6 -4.4 phosphomannose isomerase compare
Atu1748 -0.6 -3.0 NIFU-like protein compare
Atu3017 -0.6 -0.7 phosphoglyceromutase compare
Atu6165 -0.6 -0.3 hypothetical protein compare
Atu0421 -0.6 -0.8 ABC transporter, membrane spanning protein compare
Atu2138 -0.6 -2.6 dehydrogenase compare
Atu3292 -0.6 -3.5 alanine racemase compare
Atu2428 -0.6 -3.0 exopolysaccharide production protein PssB compare
Atu0977 -0.6 -1.8 serine protease DO-like protease compare
Atu2710 -0.6 -2.2 hypothetical protein compare
Atu4893 -0.5 -2.3 hypothetical protein compare
Atu3908 -0.5 -3.9 GntR family transcriptional regulator compare
Atu1619 -0.5 -1.7 protein-export membrane protein SECG compare
Atu5449 -0.5 -1.6 heat-shock protein compare
Atu0939 -0.5 -1.0 PemI protein compare
Atu0723 -0.5 -0.9 FAD dependent oxidoreductase compare
Atu3799 -0.5 -3.8 GntR family transcriptional regulator compare
Atu4866 -0.5 -2.7 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source spermidine in Agrobacterium fabrum C58

For nitrogen source spermidine across organisms