Experiment set3IT083 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6C2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF2808 -4.9 -8.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF20 -3.6 -8.7 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF4355 -3.4 -1.9 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF2213 -2.7 -7.5 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF4010 -2.7 -3.5 Flagellar motor switch protein FliN compare
GFF1634 -2.6 -4.2 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF2436 -2.5 -4.1 Iron-sulfur cluster regulator IscR compare
GFF2047 -2.5 -9.9 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF384 -2.3 -5.9 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF873 -2.2 -2.1 hypothetical protein compare
GFF236 -1.8 -1.5 FIG00545237: hypothetical protein compare
GFF115 -1.8 -5.2 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF1832 -1.8 -10.5 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF4774 -1.7 -1.9 FIG074102: hypothetical protein compare
GFF1440 -1.7 -10.6 FIG00638940: hypothetical protein compare
GFF4653 -1.6 -3.2 TolA protein compare
GFF2119 -1.6 -2.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF3667 -1.5 -1.5 Cytidylate kinase (EC 2.7.4.25) compare
GFF4655 -1.5 -3.1 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1411 -1.5 -4.8 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF1934 -1.4 -4.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF629 -1.4 -2.2 Shikimate kinase I (EC 2.7.1.71) compare
GFF4145 -1.4 -1.7 hypothetical protein compare
GFF3603 -1.4 -2.0 Secretion system apparatus protein SsaM compare
GFF1830 -1.3 -6.9 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF267 -1.3 -6.2 Transcriptional activator RfaH compare
GFF121 -1.3 -3.0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2946 -1.3 -4.0 RNA polymerase sigma-54 factor RpoN compare
GFF341 -1.3 -1.2 RmbA compare
GFF55 -1.2 -6.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF4182 -1.2 -5.0 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF2845 -1.2 -2.7 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF1312 -1.1 -2.3 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF188 -1.1 -5.9 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF2392 -1.1 -2.0 Peptide deformylase (EC 3.5.1.88) compare
GFF1497 -1.1 -2.0 Transcription termination protein NusA compare
GFF1503 -1.1 -4.5 Lipoprotein nlpI precursor compare
GFF110 -1.1 -3.7 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF4387 -1.1 -2.5 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF3212 -1.1 -1.3 FIG01046763: hypothetical protein compare
GFF824 -1.1 -2.5 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1221 -1.0 -1.6 hypothetical protein compare
GFF4353 -1.0 -2.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF2537 -1.0 -1.6 hypothetical protein compare
GFF4020 -1.0 -2.9 Flagellar hook-basal body complex protein FliE compare
GFF2148 -1.0 -2.7 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF261 -1.0 -1.6 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes compare
GFF794 -1.0 -2.0 Phage holin compare
GFF4175 -0.9 -1.9 Uncharacterized protein YfiR precursor compare
GFF2398 -0.9 -1.1 FIG00640156: hypothetical protein compare
GFF4417 -0.9 -1.5 Methionine ABC transporter ATP-binding protein compare
GFF2517 -0.9 -1.0 [NiFe] hydrogenase nickel incorporation HybF-like protein compare
GFF3722 -0.9 -1.2 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF1114 -0.9 -2.1 FIG01200701: possible membrane protein compare
GFF2160 -0.9 -2.9 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF1660 -0.9 -3.8 Flagellar biosynthesis protein FlhA compare
GFF2409 -0.9 -3.8 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF587 -0.9 -3.7 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF2045 -0.9 -1.7 hypothetical protein compare
GFF4639 -0.9 -2.0 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF3506 -0.9 -1.5 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF2223 -0.9 -3.3 GTP-binding protein TypA/BipA compare
GFF3658 -0.9 -1.8 FIG01046987: hypothetical protein compare
GFF945 -0.9 -1.6 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF1678 -0.9 -1.6 Ferritin-like protein 2 compare
GFF3632 -0.9 -2.4 Transcriptional regulator SlyA compare
GFF1472 -0.9 -1.8 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF2690 -0.8 -1.3 Peptide transport system permease protein SapC compare
GFF2733 -0.8 -2.3 Membrane protein YciC, linked to IspA compare
GFF1808 -0.8 -2.5 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
GFF635 -0.8 -3.0 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF357 -0.8 -1.5 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF4126 -0.8 -0.7 FIG01047407: hypothetical protein compare
GFF3229 -0.8 -1.6 Secreted effector protein compare
GFF973 -0.8 -2.1 FIG074102: hypothetical protein compare
GFF3712 -0.8 -2.4 Cyclic AMP receptor protein compare
GFF1194 -0.8 -3.8 DNA replication protein compare
GFF3355 -0.8 -2.7 Flagellar basal-body rod protein FlgC compare
GFF2094 -0.8 -1.5 Putative outer membrane lipoprotein compare
GFF4652 -0.8 -1.9 Tol biopolymer transport system, TolR protein compare
GFF3461 -0.8 -0.7 hypothetical protein compare
GFF603 -0.8 -1.8 NfuA Fe-S protein maturation compare
GFF2906 -0.8 -2.0 Protein yifE compare
GFF2922 -0.7 -1.8 Transcription elongation factor GreA compare
GFF4337 -0.7 -1.4 FIG001943: hypothetical protein YajQ compare
GFF499 -0.7 -4.6 GGDEF/EAL domain protein YhjH compare
GFF2592 -0.7 -1.4 secreted effector protein compare
GFF3007 -0.7 -4.5 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) compare
GFF4601 -0.7 -3.9 Phosphoglucomutase (EC 5.4.2.2) compare
GFF2657 -0.7 -3.2 Universal stress protein E compare
GFF4018 -0.7 -1.5 Flagellar M-ring protein FliF compare
GFF3087 -0.7 -2.3 FIG074102: hypothetical protein compare
GFF339 -0.7 -2.9 YqeJ protein compare
GFF4675 -0.7 -2.4 putative RecA/RadA recombinase compare
GFF4288 -0.7 -4.3 AroM protein compare
GFF1781 -0.7 -1.5 Putative binding-protein-dependent transport system compare
GFF1950 -0.7 -2.3 Chorismate synthase (EC 4.2.3.5) compare
GFF1921 -0.7 -1.0 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF4017 -0.7 -4.2 Flagellar motor switch protein FliG compare
GFF352 -0.7 -1.1 FIG01048298: hypothetical protein compare
GFF1434 -0.7 -2.3 FIG00732228: membrane protein compare
GFF2466 -0.7 -0.8 Sialic acid utilization regulator, RpiR family compare
GFF190 -0.7 -2.7 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF1408 -0.7 -2.1 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF2008 -0.7 -1.5 probable membrane protein yjeI compare
GFF1334 -0.7 -0.8 Uncharacterized protein YohL compare
GFF2221 -0.7 -3.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF3426 -0.7 -1.3 Virulence protein MsgA compare
GFF3621 -0.7 -1.9 Glutaredoxin-related protein compare
GFF1281 -0.7 -0.9 Head decoration protein compare
GFF1235 -0.7 -2.1 27.5 kDa virulence protein compare
GFF1815 -0.7 -2.2 Electron transport complex protein RnfA compare
GFF2841 -0.7 -0.9 putative exported protein compare
GFF4683 -0.7 -2.0 Phage minor tail protein compare
GFF1785 -0.7 -2.4 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon compare
GFF1813 -0.6 -1.2 Cnu protein compare
GFF2562 -0.6 -3.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF4619 -0.6 -1.3 hypothetical protein compare
GFF1451 -0.6 -2.3 Putative membrane protein, clustering with ActP compare
GFF2389 -0.6 -1.0 Trk system potassium uptake protein TrkA compare
GFF2178 -0.6 -0.6 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
GFF3703 -0.6 -2.5 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
GFF2220 -0.6 -3.6 Nitrogen regulation protein NR(I) compare
GFF2290 -0.6 -1.1 Putative periplasmic protein compare
GFF192 -0.6 -3.2 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF2907 -0.6 -2.9 HTH-type transcriptional regulator hdfR compare
GFF3515 -0.6 -1.2 FIG00637864: hypothetical protein compare
GFF4192 -0.6 -2.0 DNA-binding protein HU-alpha compare
GFF881 -0.6 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
GFF3584 -0.6 -2.5 Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) compare
GFF2833 -0.6 -1.3 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF4015 -0.6 -3.0 Flagellum-specific ATP synthase FliI compare
GFF2110 -0.6 -1.7 Sigma factor RpoE regulatory protein RseC compare
GFF2640 -0.6 -0.9 probable lipoprotein YPO2331 compare
GFF338 -0.6 -4.1 Putative sensory transducer compare
GFF3625 -0.6 -1.0 Transcriptional regulator, TetR family compare
GFF4473 -0.6 -1.2 FIG01046818: hypothetical protein compare
GFF848 -0.6 -1.6 Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69) compare
GFF466 -0.6 -2.3 Chaperone protein lpfB precursor compare
GFF992 -0.6 -1.0 hypothetical protein compare
GFF4128 -0.6 -2.5 hypothetical protein compare
GFF3395 -0.6 -0.7 Putative outer membrane protein compare
GFF2427 -0.6 -2.3 Protein SseB compare
GFF3248 -0.6 -1.8 Outer membrane protein A precursor compare
GFF4087 -0.6 -0.9 Mobile element protein compare
GFF2864 -0.6 -1.0 Mobile element protein compare
GFF3037 -0.6 -1.1 hypothetical protein compare
GFF4042 -0.6 -2.9 SAM-dependent methyltransferase YafE (UbiE paralog) compare
GFF1090 -0.6 -1.1 Chaperone protein DnaJ compare
GFF3362 -0.6 -1.5 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF2948 -0.6 -1.8 PTS system nitrogen-specific IIA component, PtsN compare
GFF1259 -0.6 -2.6 Error-prone repair protein UmuD compare
GFF4598 -0.6 -1.7 Uncharacterized protein ybfE compare
GFF4013 -0.6 -3.8 Flagellar hook-length control protein FliK compare
GFF626 -0.6 -0.7 Type IV pilus biogenesis protein PilO compare
GFF1195 -0.6 -2.6 hypothetical protein compare
GFF2124 -0.6 -2.2 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
GFF3618 -0.6 -2.5 Purine nucleotide synthesis repressor compare
GFF3154 -0.6 -1.6 Zinc transporter ZupT compare
GFF197 -0.6 -1.4 Probable secreted protein compare
GFF2573 -0.6 -1.2 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF201 -0.5 -0.9 Ferredoxin-like protein FixX compare
GFF3356 -0.5 -2.0 Flagellar basal-body rod modification protein FlgD compare
GFF3789 -0.5 -1.4 Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17) compare
GFF1205 -0.5 -1.5 hypothetical protein compare
GFF2954 -0.5 -3.3 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF1554 -0.5 -2.0 Putative transcriptional regulator compare
GFF1641 -0.5 -0.9 hypothetical protein compare
GFF2441 -0.5 -2.0 Anaerobic sulfite reductase subunit B compare
GFF3196 -0.5 -0.8 Inner membrane protein YqjE compare
GFF1219 -0.5 -1.8 FIG01048676: hypothetical protein compare
GFF3071 -0.5 -1.3 hypothetical protein compare
GFF2593 -0.5 -1.4 FIG00639831: hypothetical protein compare
GFF1303 -0.5 -0.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF910 -0.5 -2.5 Putative inner membrane protein compare
GFF4460 -0.5 -1.3 Putative inner membrane protein compare
GFF1750 -0.5 -1.6 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF4722 -0.5 -1.0 [NiFe] hydrogenase metallocenter assembly protein HypC compare
GFF744 -0.5 -1.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
GFF1233 -0.5 -2.6 Transposase compare
GFF540 -0.5 -2.4 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
GFF2638 -0.5 -1.3 D-lactate dehydrogenase (EC 1.1.1.28) compare
GFF2200 -0.5 -1.8 Phage CI-like repressor compare
GFF4343 -0.5 -2.1 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
GFF1076 -0.5 -1.2 Aerobic respiration control protein arcA compare
GFF2966 -0.5 -1.5 Transcriptional regulator NanR compare
GFF125 -0.5 -1.1 hypothetical protein compare
GFF3062 -0.5 -2.0 FIG004016: Uncharacterized protein YggN compare
GFF3749 -0.5 -2.3 Nucleoid-associated protein NdpA compare
GFF2801 -0.5 -1.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
GFF2063 -0.5 -0.8 Inner membrane protein YfeZ compare
GFF2937 -0.5 -2.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
GFF2201 -0.5 -1.8 putative DNA-binding protein compare
GFF975 -0.5 -1.5 FIG074102: hypothetical protein compare
GFF3315 -0.5 -0.8 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF1882 -0.5 -1.7 NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) compare
GFF1885 -0.5 -2.2 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF2539 -0.5 -1.1 putative phage-related secreted protein compare
GFF1887 -0.5 -2.3 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF3684 -0.5 -1.0 Hypothetical metal-binding enzyme, YcbL homolog compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6C2_phage across organisms