Experiment set3IT082 for Agrobacterium fabrum C58

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1446 -4.5 -3.8 two component response regulator compare
Atu3707 -4.2 -4.2 phosphoserine aminotransferase compare
Atu5045 -2.9 -1.8 hypothetical protein compare
Atu0035 -2.6 -7.6 phosphoenolpyruvate carboxykinase compare
Atu4773 -2.6 -3.0 two component response regulator compare
Atu5142 -2.6 -2.1 hypothetical protein compare
Atu2040 -2.5 -6.3 phosphoserine phosphatase compare
Atu3706 -2.4 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu6153 -2.1 -2.8 conserved hypothetical protein compare
Atu0039 -2.0 -2.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu2650 -2.0 -10.7 glycerol-3-phosphate dehydrogenase compare
Atu0099 -2.0 -9.8 prephenate dehydratase compare
Atu0017 -2.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3469 -2.0 -2.5 phosphoglyceromutase compare
Atu0876 -1.9 -2.4 superoxide dismutase compare
Atu1359 -1.9 -1.5 dnaK deletion suppressor protein compare
Atu1688 -1.8 -5.6 indole-3-glycerol-phosphate synthase compare
Atu1687 -1.8 -6.4 anthranilate phosphoribosyltransferase compare
Atu0030 -1.7 -1.7 phosphocarrier protein HPr compare
Atu0679 -1.7 -5.5 ATP phosphoribosyltransferase compare
Atu3739 -1.7 -3.6 phosphoglycerate kinase compare
Atu2289 -1.7 -11.9 anthranilate synthase component I and II compare
Atu0040 -1.7 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0422 -1.6 -1.8 ABC transporter, membrane spanning protein compare
Atu2207 -1.6 -3.0 two component sensor kinase compare
Atu0678 -1.6 -4.5 histidyl-tRNA synthetase compare
Atu1750 -1.6 -5.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1620 -1.5 -7.4 triosephosphate isomerase compare
Atu0611 -1.5 -5.4 ABC transporter, membrane spanning protein conserved
Atu2286 -1.4 -1.9 hypothetical protein compare
Atu1219 -1.4 -1.4 hypothetical protein compare
Atu0610 -1.4 -8.9 ABC transporter, nucleotide binding/ATPase protein conserved
Atu6098 -1.4 -0.5 transcriptional regulator, HTH family compare
Atu8087 -1.4 -1.3 putative peptidoglycan binding protein compare
Atu3121 -1.3 -1.8 cold shock protein compare
Atu1445 -1.3 -3.9 two component sensor kinase compare
Atu0609 -1.3 -7.3 ABC transporter, substrate binding protein (putrescine) conserved
Atu1140 -1.3 -4.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2036 -1.3 -7.6 acetolactate synthase III, large subunit compare
Atu1030 -1.3 -1.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu5163 -1.2 -1.8 type IV secretion protein AvhB2 compare
Atu2718 -1.2 -5.1 homoserine O-succinyltransferase compare
Atu5115 -1.2 -1.2 hypothetical protein compare
Atu3012 -1.2 -2.0 hypothetical protein compare
Atu0346 -1.2 -2.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3740 -1.2 -5.4 fructose bisphosphate aldolase compare
Atu6107 -1.2 -2.2 hypothetical protein compare
Atu0601 -1.2 -4.6 oxidoreductase compare
Atu0332 -1.2 -6.4 RNA polymerase sigma-54 factor compare
Atu4869 -1.1 -4.0 hypothetical protein compare
Atu4711 -1.1 -3.7 two component sensor kinase compare
Atu0025 -1.1 -1.4 hypothetical protein compare
Atu2264 -1.1 -6.8 2-isopropylmalate synthase compare
Atu2709 -1.1 -8.5 3-isopropylmalate dehydratase, large subunit compare
Atu0193 -1.1 -3.1 glutamine synthetase compare
Atu0043 -1.1 -2.2 imidazoleglycerol-phosphate dehydratase compare
Atu0031 -1.1 -1.2 PTS system, IIA component compare
Atu0194 -1.1 -6.2 oxidoreductase conserved
Atu0225 -1.1 -0.9 hypothetical protein compare
Atu2791 -1.0 -5.1 3-isopropylmalate dehydrogenase compare
Atu5493 -1.0 -2.4 hypothetical protein compare
Atu3755 -1.0 -3.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1463 -1.0 -5.0 glycine cleavage system component H compare
Atu0188 -1.0 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu1205 -1.0 -6.2 threonine dehydratase compare
Atu3908 -1.0 -6.1 GntR family transcriptional regulator compare
Atu1464 -1.0 -4.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu2790 -1.0 -2.2 3-isopropylmalate dehydratase, small subunit compare
Atu0912 -1.0 -1.0 Na+/H+ antiporter compare
Atu0141 -1.0 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu5026 -1.0 -2.4 hypothetical protein compare
Atu4890 -1.0 -1.6 IS426 transposase compare
Atu0824 -1.0 -1.0 hypothetical protein compare
Atu0486 -0.9 -3.1 dihydroorotate dehydrogenase compare
Atu6114 -0.9 -1.0 hypothetical protein compare
Atu0142 -0.9 -1.6 cytochrome o ubiquinol oxidase subunit II compare
Atu3264 -0.9 -3.4 IclR family transcriptional regulator compare
Atu0537 -0.9 -3.4 histidinol dehydrogenase compare
Atu6179 -0.9 -2.1 virA/G regulated protein compare
Atu2710 -0.9 -4.9 hypothetical protein compare
Atu3912 -0.9 -5.0 hypothetical protein compare
Atu1462 -0.9 -5.5 glycine cleavage system protein P2 compare
Atu1308 -0.9 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu6113 -0.9 -1.7 conserved hypothetical protein compare
Atu3369 -0.9 -3.9 hypothetical protein compare
Atu0836 -0.9 -1.4 Glutathione-S-transferase compare
Atu1307 -0.9 -4.2 dihydroorotase compare
Atu5429 -0.9 -1.4 transcriptional regulator compare
Atu0434 -0.9 -1.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4061 -0.8 -2.9 exopolysaccharide production repressor protein compare
Atu5475 -0.8 -0.9 hypothetical protein compare
Atu1588 -0.8 -3.8 homoserine dehydrogenase compare
Atu3293 -0.8 -4.9 D-amino acid dehydrogenase small subunit compare
Atu3910 -0.8 -3.0 LamB/YcsF family protein compare
Atu6156 -0.8 -2.1 virA/G regulated gene compare
Atu1850 -0.8 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu0886 -0.8 -0.6 hypothetical protein compare
Atu5088 -0.8 -1.2 hypothetical protein compare
Atu1844 -0.8 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu2352 -0.8 -1.7 hypothetical protein compare
Atu2057 -0.8 -1.8 DNA helicase II compare
Atu1075 -0.8 -2.9 amidophosphoribosyltransferase compare
Atu1714 -0.8 -1.3 exonuclease III compare
Atu2140 -0.8 -1.7 hypothetical protein compare
Atu1737 -0.8 -2.3 hypothetical protein compare
Atu2777 -0.8 -3.9 hypothetical protein compare
Atu2155 -0.8 -6.2 methionine synthase compare
Atu0026 -0.8 -0.8 hypothetical protein compare
Atu3885 -0.8 -3.3 inositol monophosphatase compare
Atu3018 -0.7 -1.9 hypothetical protein compare
Atu5010 -0.7 -0.9 hypothetical protein compare
Atu3008 -0.7 -0.7 hypothetical protein compare
Atu2633 -0.7 -1.3 RhtB family transporter compare
Atu1774 -0.7 -3.8 ABC transporter, substrate binding protein (peptide) compare
Atu1141 -0.7 -3.0 Phosphoribosylglycinamide synthetase compare
Atu2077 -0.7 -1.4 DNA polymerase III, epsilon subunit compare
Atu8062 -0.7 -2.2 hypothetical protein compare
Atu4873 -0.7 -4.0 TetR family transcriptional regulator compare
Atu3913 -0.7 -3.1 biotin carboxylase compare
Atu3400 -0.7 -3.4 hypothetical protein compare
Atu5124 -0.7 -3.3 glutamate-1-semialdehyde aminotransferase compare
Atu0357 -0.7 -3.8 phosphate starvation inducible protein compare
Atu0041 -0.7 -1.0 glutamine amidotransferase compare
Atu6053 -0.7 -1.8 conserved hypothetical protein compare
Atu1592 -0.7 -2.3 hypothetical protein compare
Atu8036 -0.7 -2.0 protein YBGT-like protein compare
Atu4173 -0.7 -1.7 phosphoenolpyruvate-protein phosphotransferase compare
Atu0399 -0.7 -2.3 dihydroorotase compare
Atu0971 -0.7 -2.4 two component sensor kinase compare
Atu5095 -0.7 -2.1 hypothetical protein compare
Atu0189 -0.7 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu3011 -0.7 -1.2 ArsR family transcriptional regulator compare
Atu0400 -0.6 -2.1 orotate phosphoribosyltransferase compare
Atu0894 -0.6 -1.2 ABC transporter, membrane spanning protein compare
Atu0647 -0.6 -2.3 phosphoribosylamine--glycine ligase compare
Atu5540 -0.6 -0.3 hypothetical protein compare
Atu1456 -0.6 -4.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0636 -0.6 -3.1 hypothetical protein compare
Atu0298 -0.6 -3.2 orotidine 5 compare
Atu4317 -0.6 -2.1 TetR family transcriptional regulator compare
Atu8012 -0.6 -1.0 hypothetical protein compare
Atu0972 -0.6 -2.3 lipA protein compare
Atu8047 -0.6 -1.2 hypothetical protein compare
Atu0206 -0.6 -1.9 hypothetical protein compare
Atu4897 -0.6 -0.9 hypothetical protein compare
Atu2757 -0.6 -2.4 nitrogen regulatory protein PII compare
Atu5531 -0.6 -3.0 ABC transporter substrate binding protein compare
Atu2606 -0.6 -3.2 transcriptional regulator, GntR family compare
Atu3075 -0.6 -3.4 TetR family transcriptional regulator compare
Atu2812 -0.6 -3.3 hypothetical protein compare
Atu8195 -0.6 -1.2 hypothetical protein compare
Atu4677 -0.6 -1.0 hypothetical protein compare
Atu1302 -0.6 -1.9 hypothetical protein compare
Atu0093 -0.6 -1.9 Recombination protein compare
Atu2163 -0.6 -0.9 hypothetical protein compare
Atu6188 -0.6 -2.1 virA/G regulated protein compare
Atu5513 -0.6 -0.5 cold shock protein compare
Atu0190 -0.6 -3.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3754 -0.6 -2.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0432 -0.6 -2.4 O-succinylhomoserine sulfhydrylase compare
Atu5492 -0.6 -1.8 hypothetical protein compare
Atu5149 -0.6 -1.6 acetyltransferase compare
Atu0977 -0.6 -1.4 serine protease DO-like protease compare
Atu0280 -0.6 -1.1 hypothetical protein compare
Atu6120 -0.6 -1.4 HNS-type DNA binding protein compare
Atu4610 -0.6 -3.9 sugar nucleotide epimerase/dehydratase compare
Atu6149 -0.5 -1.2 hypothetical protein compare
Atu5517 -0.5 -0.8 hypothetical protein compare
Atu1325 -0.5 -0.5 acetyltransferase compare
Atu3497 -0.5 -1.6 hypothetical protein compare
Atu1444 -0.5 -2.0 nitrogen regulation protein compare
Atu2796 -0.5 -2.9 precorrin-4 C11-methyltransferase compare
Atu4505 -0.5 -3.3 LacI family transcriptional regulator compare
Atu3028 -0.5 -3.2 hypothetical protein compare
Atu5450 -0.5 -1.2 hypothetical protein compare
Atu5508 -0.5 -2.3 glutathione S-transferase compare
Atu4872 -0.5 -3.5 LysR family transcriptional regulator compare
Atu0331 -0.5 -1.2 sigma-54 modulation protein compare
Atu4502 -0.5 -2.6 cobalamin synthesis protein compare
Atu8088 -0.5 -0.8 hypothetical protein compare
Atu2678 -0.5 -2.3 2'-5' RNA ligase compare
Atu0907 -0.5 -1.6 Phosphinothricin acetyltransferase compare
Atu2248 -0.5 -0.8 hypothetical protein compare
Atu0769 -0.5 -1.0 protoheme IX farnesyltransferase compare
Atu0885 -0.5 -1.3 hypothetical protein compare
Atu2746 -0.5 -1.1 hypothetical protein compare
Atu6122 -0.5 -2.2 nuclease compare
Atu0036 -0.5 -1.6 hypothetical protein compare
Atu2267 -0.5 -2.2 hypothetical protein compare
Atu1846 -0.5 -0.9 hypothetical protein compare
Atu3246 -0.5 -2.0 amino acid ABC transporter substrate-binding protein compare
Atu1522 -0.5 -2.4 transcriptional regulator, LacI family compare
Atu0941 -0.5 -0.5 hypothetical protein compare
Atu2807 -0.5 -2.7 cob(I)alamin adenosyltransferase compare
Atu1683 -0.5 -1.0 hypothetical protein compare
Atu2799 -0.5 -2.2 precorrin-6x reductase compare
Atu2827 -0.5 -2.2 hypothetical protein compare
Atu2786 -0.5 -1.8 hypothetical protein compare
Atu3507 -0.5 -2.2 hypothetical protein compare
Atu3015 -0.5 -2.4 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Agrobacterium fabrum C58

For nitrogen source Putrescine Dihydrochloride across organisms