Experiment set3IT080 for Pseudomonas putida KT2440

Compare to:

LB with 1-Pentanol 0.3 vol%

200 most important genes:

  gene name fitness t score description  
PP_4874 -3.3 -2.2 50S ribosomal protein L9 compare
PP_0345 -3.1 -5.9 putative Heptose kinase WapP compare
PP_0164 -2.9 -6.2 conserved protein of unknown function compare
PP_0888 -2.8 -2.7 Photosynthetic apparatus regulatory protein RegA compare
PP_4937 -2.1 -3.8 toluene tolerance protein compare
PP_4799 -2.1 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2337 -2.1 -2.8 aconitate isomerase compare
PP_5328 -2.1 -3.8 putative phosphate transport system permease protein compare
PP_1216 -2.0 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1217 -1.9 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2336 -1.8 -2.9 aconitate hydratase 1 compare
PP_2378 -1.8 -2.0 Fe/S biogenesis protein NfuA compare
PP_5110 -1.7 -3.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_1898 -1.7 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_0063 -1.6 -3.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5109 -1.6 -7.4 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_1322 -1.6 -2.0 putative Lipoprotein compare
PP_1224 -1.6 -4.7 periplasmic subunit of the TolQRA transport system compare
PP_4994 -1.6 -4.9 conserved protein of unknown function compare
PP_1994 -1.6 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_1176 -1.6 -2.7 conserved protein of unknown function compare
PP_1097 -1.6 -1.7 Methionine--tRNA ligase compare
PP_0218 -1.6 -6.5 Sensory box protein compare
PP_4941 -1.6 -5.7 conserved exported protein of unknown function compare
PP_0753 -1.6 -5.4 putative Lipoprotein compare
PP_5338 -1.6 -2.7 aspartate ammonia-lyase compare
PP_4682 -1.5 -4.5 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_5146 -1.5 -5.5 RNA pyrophosphohydrolase compare
PP_5017 -1.5 -1.8 Sec-independent protein translocase protein TatB compare
PP_0346 -1.5 -6.3 putative Heptose kinase WapQ compare
PP_4122 -1.4 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1512 -1.4 -3.4 conserved protein of unknown function compare
PP_2345 -1.4 -3.4 conserved exported protein of unknown function compare
PP_1384 -1.4 -6.3 Probable efflux pump outer membrane protein TtgC compare
PP_1598 -1.4 -3.8 regulatory intramembrane protein RIP zinc protease compare
PP_4129 -1.4 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0938 -1.3 -6.6 conserved protein of unknown function compare
PP_5571 -1.3 -1.6 conserved protein of unknown function compare
PP_4897 -1.3 -4.8 N-acetylmuramoyl-L-alanine amidase compare
PP_1733 -1.3 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_1734 -1.3 -1.7 Probable septum site-determining protein MinC compare
PP_0001 -1.3 -1.8 probable chromosome-partitioning protein compare
PP_2144 -1.3 -2.4 Transcriptional regulator, TetR family compare
PP_2720 -1.2 -1.4 conserved protein of unknown function compare
PP_4532 -1.2 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0643 -1.2 -2.1 protein of unknown function compare
PP_2028 -1.2 -3.1 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3938 -1.2 -1.9 conserved protein of unknown function compare
PP_0126 -1.2 -3.5 Cytochrome c4 compare
PP_5014 -1.2 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2309 -1.2 -1.5 conserved protein of unknown function compare
PP_4378 -1.1 -8.3 flagellin, filament structural protein compare
PP_0339 -1.1 -2.5 Pyruvate dehydrogenase E1 component compare
PP_1385 -1.1 -8.2 Probable efflux pump membrane transporter TtgB compare
PP_4803 -1.1 -5.5 D-alanyl-D-alanine carboxypeptidase compare
PP_4836 -1.1 -3.9 conserved exported protein of unknown function compare
PP_4482 -1.1 -2.6 Transcriptional regulator, AraC family compare
PP_4247 -1.1 -1.3 Exonuclease compare
PP_5057 -1.0 -3.6 Peptidase, M23/M37 family compare
PP_4880 -1.0 -5.3 exoribonuclease R compare
PP_1215 -1.0 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_1386 -1.0 -4.3 Probable efflux pump periplasmic linker TtgA compare
PP_5161 -1.0 -4.5 putative lysophospholipase compare
PP_2304 -1.0 -4.7 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_5310 -1.0 -3.8 junction-specific ATP-dependent DNA helicase compare
PP_4993 -1.0 -2.9 Glutathione synthetase compare
PP_1633 -1.0 -2.3 conserved exported protein of unknown function compare
PP_3649 -1.0 -2.9 Transcriptional regulator, GntR family compare
PP_4910 -1.0 -1.9 conserved protein of unknown function compare
PP_2291 -1.0 -2.5 conserved protein of unknown function compare
PP_1187 -1.0 -4.5 sensor protein compare
PP_1503 -1.0 -2.1 conserved protein of unknown function compare
PP_0948 -1.0 -1.5 Phosphocarrier protein HPr compare
PP_1716 -0.9 -2.6 Transcriptional regulator, Cro/CI family compare
PP_2884 -0.9 -3.2 XRE family transcriptional regulator compare
PP_3926 -0.9 -1.2 short-chain dehydrogenase compare
PP_3312 -0.9 -1.3 putative Heat shock protein compare
PP_5007 -0.9 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_3833 -0.9 -2.8 Response regulator compare
PP_4804 -0.9 -2.0 RlpA-like lipoprotein compare
PP_5533 -0.9 -1.1 conserved protein of unknown function compare
PP_2196 -0.9 -2.1 agmatinase compare
PP_1670 -0.9 -5.6 putative Lipoprotein compare
PP_3930 -0.9 -2.3 conserved exported protein of unknown function compare
PP_0850 -0.8 -3.9 Dual-specificity RNA methyltransferase RlmN compare
PP_2773 -0.8 -1.4 conserved protein of unknown function compare
PP_2633 -0.8 -1.5 conserved protein of unknown function compare
PP_0937 -0.8 -2.6 endoribonuclease G (RNAse G) compare
PP_0435 -0.8 -5.2 Peptidase, M23/M37 family compare
PP_3726 -0.8 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_4004 -0.8 -2.7 DNA translocase FtsK compare
PP_4236 -0.8 -3.0 putative Thiol:disulfide interchange protein dsbE compare
PP_2356 -0.8 -4.7 putative Phytochrome family protein compare
PP_1669 -0.8 -4.0 NLP/P60 family protein compare
PP_4131 -0.8 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_2136 -0.8 -2.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4936 -0.8 -3.4 O-antigen polymerase compare
PP_1188 -0.8 -3.9 C4-dicarboxylate transport protein compare
PP_5329 -0.8 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4377 -0.8 -3.0 putative Flagellin FlaG compare
PP_0166 -0.8 -5.1 HlyD family secretion protein compare
PP_0959 -0.8 -1.7 phospholipid ABC transporter compare
PP_4697 -0.8 -1.4 poly(A) polymerase compare
PP_5324 -0.8 -1.7 Response regulator compare
PP_4120 -0.8 -1.6 NADH-quinone oxidoreductase subunit B compare
PP_1683 -0.8 -1.8 Transcriptional regulator, MarR family compare
PP_2067 -0.8 -2.5 putative EmrB/QacA family drug resistance transporter compare
PP_0504 -0.8 -3.9 Outer membrane protein OprG compare
PP_0182 -0.8 -2.1 conserved protein of unknown function compare
PP_0989 -0.8 -2.1 glycine cleavage system H protein 1 compare
PP_0719 -0.8 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1489 -0.8 -1.7 CheW domain protein compare
PP_4835 -0.7 -1.4 conserved exported protein of unknown function compare
PP_0757 -0.7 -2.3 conserved protein of unknown function compare
PP_0685 -0.7 -1.3 conserved protein of unknown function compare
PP_1836 -0.7 -2.2 putative metal transporter, ZIP family compare
PP_5557 -0.7 -1.2 protein of unknown function compare
PP_4560 -0.7 -2.5 putative Ribonuclease BN compare
PP_4707 -0.7 -2.1 OsmY-related protein compare
PP_1515 -0.7 -2.6 Transcriptional regulator, tetR family compare
PP_2693 -0.7 -2.7 putative Dipeptidase compare
PP_1214 -0.7 -1.2 putative transcriptional regulatory protein compare
PP_4824 -0.7 -2.9 Sensor histidine kinase/response regulator compare
PP_2031 -0.7 -1.8 conserved protein of unknown function compare
PP_1036 -0.7 -3.4 membrane-bound lytic murein transglycosylase F compare
PP_0540 -0.7 -2.6 conserved inner membrane protein compare
PP_1556 -0.7 -1.4 conserved protein of unknown function compare
PP_4215 -0.7 -2.2 pyoverdine biosynthesis related protein compare
PP_1208 -0.7 -1.3 conserved protein of unknown function, SlyX family compare
PP_3481 -0.7 -1.8 conserved exported protein of unknown function compare
PP_0274 -0.7 -0.7 putative transcriptional regulator containing HTH domain compare
PP_0246 -0.7 -1.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_4814 -0.7 -1.6 ATP-dependent protease La domain protein compare
PP_1736 -0.7 -1.9 conserved protein of unknown function compare
PP_2087 -0.7 -1.6 CmpX protein compare
PP_5603 -0.7 -2.7 putative FAD dependent oxidoreductase compare
PP_3233 -0.7 -1.6 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_1690 -0.7 -2.3 conserved protein of unknown function compare
PP_0832 -0.7 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5253 -0.7 -1.9 Arylesterase compare
PP_1692 -0.7 -1.5 conserved protein of unknown function compare
PP_1468 -0.7 -1.1 Tyrosine recombinase XerD compare
PP_4387 -0.7 -1.5 conserved exported protein of unknown function compare
PP_0251 -0.7 -3.0 conserved membrane protein of unknown function compare
PP_1646 -0.7 -2.4 putative Thioredoxin compare
PP_5543 -0.6 -1.7 protein of unknown function compare
PP_0240 -0.6 -1.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_2032 -0.6 -2.4 putative ATPase compare
PP_2723 -0.6 -2.3 Uncharacterized oxidoreductase YhdF compare
PP_4811 -0.6 -1.7 Gamma-glutamyl phosphate reductase compare
PP_1757 -0.6 -2.5 DNA-binding transcriptional dual regulator compare
PP_2724 -0.6 -2.3 conserved protein of unknown function compare
PP_4529 -0.6 -2.3 conserved protein of unknown function compare
PP_4143 -0.6 -1.9 conserved protein of unknown function compare
PP_4738 -0.6 -2.0 conserved exported protein of unknown function compare
PP_3400 -0.6 -2.8 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_2005 -0.6 -3.0 conserved exported protein of unknown function compare
PP_2750 -0.6 -1.8 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4018 -0.6 -2.0 Acetyltransferase, GNAT family compare
PP_0220 -0.6 -2.3 methionine import ATP-binding protein metN2 compare
PP_5267 -0.6 -1.3 putative cytochrome c5 compare
PP_4227 -0.6 -0.9 conserved protein of unknown function compare
PP_3766 -0.6 -1.1 Lactoylglutathione lyase compare
PP_1528 -0.6 -1.1 conserved protein of unknown function compare
PP_3814 -0.6 -2.6 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_1570 -0.6 -2.5 Head-tail adaptor compare
PP_3474 -0.6 -2.6 putative Curli fiber protein CsgE compare
PP_0250 -0.6 -1.1 heat shock protein Hsp15 involved in ribosome recycling compare
PP_3798 -0.6 -2.3 conserved protein of unknown function compare
PP_3110 -0.6 -1.0 protein of unknown function compare
PP_0167 -0.6 -4.8 Toxin secretion ATP-binding protein compare
PP_5621 -0.6 -0.7 protein of unknown function compare
PP_4845 -0.6 -1.7 putative Urea ABC transporter, ATP-binding protein compare
PP_4911 -0.6 -2.9 conserved protein of unknown function compare
PP_4009 -0.6 -1.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_5689 -0.6 -2.6 conserved protein of unknown function compare
PP_5224 -0.6 -2.1 conserved protein of unknown function compare
PP_1739 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_4904 -0.6 -3.2 Flagellar motor rotation protein compare
PP_1233 -0.6 -1.8 sulfurtransferase compare
PP_5423 -0.6 -1.2 conserved membrane protein of unknown function compare
PP_5284 -0.6 -3.0 UPF0758 protein PP_5284 compare
PP_5486 -0.6 -1.2 conserved protein of unknown function compare
PP_4818 -0.6 -2.0 ribosomal protein L11 methyltransferase compare
PP_1346 -0.6 -2.6 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_1319 -0.6 -2.4 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4916 -0.6 -2.4 putative esterase compare
PP_0855 -0.6 -1.0 conserved protein of unknown function compare
PP_4251 -0.6 -1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_1903 -0.6 -1.2 putative phosphotyrosine-protein phosphatase compare
PP_3141 -0.6 -2.2 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_3409 -0.6 -1.4 putative Cobalamin biosynthesis protein cobE compare
PP_3637 -0.6 -0.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5227 -0.6 -2.5 diaminopimelate decarboxylase compare
PP_2280 -0.5 -0.6 conserved protein of unknown function compare
PP_4946 -0.5 -3.5 sodium/L-proline transporter compare
PP_4754 -0.5 -2.7 Transcriptional regulator, TetR family compare
PP_5015 -0.5 -1.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1269 -0.5 -0.8 Universal stress protein family compare
PP_4797 -0.5 -1.4 conserved protein of unknown function compare


Specific Phenotypes

For 7 genes in this experiment

For stress 1-Pentanol in Pseudomonas putida KT2440

For stress 1-Pentanol across organisms