Experiment set3IT080 for Pseudomonas putida KT2440

Compare to:

LB with 1-Pentanol 0.3 vol%

200 most detrimental genes:

  gene name fitness t score description  
PP_1656 +6.1 20.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_4693 +5.2 25.4 RNA polymerase-binding transcription factor DksA compare
PP_4099 +3.9 33.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +3.9 35.9 Sensor protein GacS compare
PP_1655 +3.7 5.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1728 +3.7 22.5 conserved membrane protein of unknown function compare
PP_0406 +2.3 9.7 Nucleotidyltransferase family protein compare
PP_3024 +2.2 11.0 conserved protein of unknown function compare
PP_5551 +2.1 11.6 conserved protein of unknown function compare
PP_4390 +2.1 14.8 flagellar basal-body rod protein FlgC compare
PP_4356 +2.1 8.1 Flagellar protein FliO compare
PP_4341 +2.0 11.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4391 +2.0 12.4 flagellar basal-body rod protein FlgB compare
PP_4358 +1.9 13.3 flagellar synthesis, switching and energizing component compare
PP_4386 +1.9 8.8 flagellar basal-body rod protein FlgF compare
PP_4352 +1.9 16.3 flagellin export apparatus, substrate specificity protein compare
PP_4366 +1.9 15.4 flagellum-specific ATP synthase compare
PP_4365 +1.9 8.8 Flagellar protein FliJ compare
PP_4368 +1.9 11.3 flagellar motor switch protein compare
PP_4354 +1.9 7.0 flagellar export apparatus subunit compare
PP_4726 +1.8 5.2 Chaperone protein DnaJ compare
PP_4344 +1.8 14.6 flagellar export pore protein compare
PP_4367 +1.8 8.0 Flagellar assembly protein FliH compare
PP_4389 +1.8 12.8 Flagellar basal-body rod modification protein FlgD compare
PP_4385 +1.8 9.1 flagellar basal-body rod protein FlgG compare
PP_4384 +1.8 15.5 Flagellar L-ring protein compare
PP_1355 +1.8 15.3 Muropeptide permease AmpG compare
PP_0405 +1.8 15.0 conserved protein of unknown function compare
PP_4353 +1.8 10.0 Flagellar biosynthetic protein fliR compare
PP_4369 +1.8 12.6 Flagellar M-ring protein compare
PP_4383 +1.8 7.8 Flagellar P-ring protein compare
PP_0434 +1.8 10.9 Anhydro-N-acetylmuramic acid kinase compare
PP_2223 +1.8 12.2 conserved protein of unknown function compare
PP_4361 +1.8 10.8 Flagellar hook-length control protein FliK compare
PP_4388 +1.7 15.1 Flagellar hook protein FlgE compare
PP_2145 +1.7 9.8 beta-N-acetylglucosaminidase compare
PP_4331 +1.7 13.0 conserved protein of unknown function compare
PP_4394 +1.7 9.3 flagella basal body P-ring formation protein compare
PP_4355 +1.6 6.5 flagellar export apparatus subunit compare
PP_4373 +1.6 13.9 Transcriptional regulator FleQ compare
PP_4370 +1.6 8.1 Flagellar hook-basal body complex protein FliE compare
PP_1309 +1.6 9.6 conserved exported protein of unknown function compare
PP_4382 +1.5 10.7 Peptidoglycan hydrolase FlgJ compare
PP_3318 +1.5 3.1 conserved protein of unknown function compare
PP_4332 +1.5 5.6 Chemotaxis protein CheW compare
PP_3821 +1.5 9.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0789 +1.5 6.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_t12 +1.5 2.2 tRNA-Thr compare
PP_2299 +1.4 3.3 Trigger factor compare
PP_4477 +1.4 8.8 N-succinylarginine dihydrolase compare
PP_1729 +1.4 1.4 conserved protein of unknown function compare
PP_4392 +1.4 8.8 chemotaxis protein methyltransferase compare
PP_3627 +1.3 7.1 conserved protein of unknown function compare
PP_4724 +1.3 6.2 Carbamoyl-phosphate synthase small chain compare
PP_4359 +1.3 5.6 Flagellar protein FliL compare
PP_0393 +1.3 3.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2889 +1.3 4.0 putative Transmembrane regulator PrtR compare
PP_1764 +1.3 7.2 Phosphoglycolate phosphatase 2 compare
PP_4999 +1.2 2.0 dihydroorotase-like protein compare
PP_5546 +1.2 1.6 conserved protein of unknown function compare
PP_4333 +1.2 3.7 CheW domain protein compare
PP_2510 +1.2 1.6 conserved protein of unknown function compare
PP_4593 +1.2 3.1 conserved protein of unknown function compare
PP_4343 +1.1 4.9 Flagellar biosynthesis protein FlhF compare
PP_4334 +1.1 5.2 ParA family protein compare
PP_4710 +1.1 8.3 tRNA pseudouridine 55 synthase compare
PP_0058 +1.0 9.0 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_3810 +1.0 2.4 conserved protein of unknown function compare
PP_1664 +1.0 3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_4329 +1.0 2.7 FlhB domain protein compare
PP_5058 +1.0 5.0 Carboxy-terminal-processing protease compare
PP_5198 +1.0 3.4 conserved protein of unknown function compare
PP_1371 +0.9 5.7 Methyl-accepting chemotaxis protein PctA compare
PP_4723 +0.9 6.3 Carbamoyl-phosphate synthase large chain compare
PP_2222 +0.9 2.4 conserved protein of unknown function compare
PP_2668 +0.9 2.2 ABC efflux transporter, ATP-binding protein compare
PP_2520 +0.8 2.9 conserved protein of unknown function compare
PP_4396 +0.8 2.8 conserved protein of unknown function compare
PP_1562 +0.8 1.6 putative Phage terminase, small subunit compare
PP_3880 +0.8 1.6 conserved exported protein of unknown function compare
PP_3715 +0.8 3.3 Muconate cycloisomerase 1 compare
PP_4701 +0.8 1.1 glucose-6-phosphate isomerase compare
PP_5745 +0.8 5.6 paraquat-inducible protein A compare
PP_3034 +0.8 1.2 putative Regulator protein compare
PP_4940 +0.8 4.3 Putative glycosyltransferase compare
PP_4406 +0.8 1.2 conserved protein of unknown function compare
PP_2121 +0.8 1.5 putative Lipoprotein compare
PP_1544 +0.8 2.6 conserved protein of unknown function compare
PP_t29 +0.8 1.7 tRNA-Ala compare
PP_1697 +0.8 2.8 transcriptional regulator, GntR family compare
PP_4338 +0.8 4.4 Chemotaxis histidine kinase CheA compare
PP_3098 +0.8 1.2 conserved protein of unknown function compare
PP_4504 +0.8 1.7 conserved exported protein of unknown function compare
PP_3957 +0.8 6.3 choline/carnitine/betaine transporter BetTC compare
PP_2417 +0.8 2.4 putative Iron ABC transporter, permease protein compare
PP_4981 +0.8 1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_4171 +0.8 5.8 conserved exported protein of unknown function compare
PP_4478 +0.8 4.4 N-succinylglutamate 5-semialdehyde dehydrogenase compare
PP_3883 +0.8 2.6 putative Phage holin compare
PP_2526 +0.8 1.8 conserved membrane protein of unknown function compare
PP_2595 +0.8 2.9 putative ABC transporter, permease/ATP-binding protein compare
PP_3097 +0.8 5.3 conserved protein of unknown function compare
PP_4939 +0.8 2.8 conserved protein of unknown function compare
PP_2231 +0.7 1.1 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_2429 +0.7 1.6 putative Membrane protein compare
PP_4371 +0.7 4.6 two component system AtoC DNA-binding transcriptional activator compare
PP_1234 +0.7 5.2 putative permease compare
PP_1099 +0.7 2.5 Cold shock protein CapB compare
PP_1568 +0.7 1.2 conserved protein of unknown function compare
PP_2581 +0.7 1.4 conserved protein of unknown function compare
PP_0914 +0.7 5.1 GGDEF domain protein compare
PP_3447 +0.7 1.1 conserved membrane protein of unknown function compare
PP_1679 +0.7 2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4179 +0.7 4.9 Chaperone protein HtpG compare
PP_2900 +0.7 1.0 conserved protein of unknown function compare
PP_1780 +0.7 6.3 putative mannosyltransferase compare
PP_5008 +0.7 1.2 Poly granule-associated protein compare
PP_2516 +0.7 2.7 HTH-type transcriptional regulator GalR compare
PP_2226 +0.7 2.5 putative K(+)/H(+) antiporter subunit F compare
PP_5475 +0.7 1.4 conserved protein of unknown function compare
PP_5270 +0.7 3.0 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_0872 +0.7 3.5 Peptide chain release factor 3 compare
PP_0848 +0.7 1.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3760 +0.7 3.5 putative methyltransferase compare
PP_5248 +0.7 1.5 putative hydrolase compare
PP_5453 +0.7 2.0 conserved protein of unknown function compare
PP_2220 +0.7 2.1 C4-type zinc finger protein, DksA/TraR family compare
PP_2416 +0.7 1.2 putative Iron ABC transporter, ATP-binding protein compare
PP_0599 +0.7 5.3 paraquat-inducible protein B compare
PP_5575 +0.7 1.6 conserved protein of unknown function compare
PP_0150 +0.7 1.8 conserved exported protein of unknown function compare
PP_5644 +0.7 2.3 conserved membrane protein of unknown function compare
PP_3682 +0.7 2.0 conserved protein of unknown function compare
PP_5604 +0.6 0.7 putative subtilisin-like serine protease compare
PP_3339 +0.6 2.7 conserved exported protein of unknown function compare
PP_1799 +0.6 5.1 GDP-mannose 4,6-dehydratase compare
PP_5553 +0.6 3.2 conserved protein of unknown function compare
PP_3026 +0.6 4.9 putative Phage recombinase compare
PP_3876 +0.6 1.1 conserved protein of unknown function compare
PP_5185 +0.6 2.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4964 +0.6 2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_3094 +0.6 2.3 conserved exported protein of unknown function compare
PP_2002 +0.6 1.3 putative enzyme compare
PP_1632 +0.6 1.3 conserved protein of unknown function compare
PP_4262 +0.6 1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1663 +0.6 3.8 conserved exported protein of unknown function compare
PP_3037 +0.6 2.0 C4-type zinc finger protein, DksA/TraR family compare
PP_4679 +0.6 2.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2705 +0.6 1.2 conserved protein of unknown function compare
PP_1310 +0.6 1.1 conserved hypothetical protein compare
PP_5184 +0.6 2.9 glutamylpolyamine synthetase compare
PP_5143 +0.6 1.5 conserved membrane protein of unknown function compare
PP_1366 +0.6 1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_2980 +0.6 3.0 conserved protein of unknown function compare
PP_2124 +0.6 2.4 putative Glycosyl transferase compare
PP_4848 +0.6 1.2 Curved DNA-binding protein compare
PP_0398 +0.6 2.5 Thiosulfate sulfurtransferase GlpE compare
PP_2546 +0.6 3.3 conserved membrane protein of unknown function compare
PP_5225 +0.6 1.1 frataxin compare
PP_5582 +0.6 1.0 conserved protein of unknown function compare
PP_3022 +0.6 3.8 Transcriptional regulator, AraC family compare
PP_4734 +0.6 3.3 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0306 +0.6 2.5 conserved protein of unknown function compare
PP_2217 +0.6 1.7 enoyl-CoA hydratase compare
PP_1691 +0.6 1.6 conserved protein of unknown function compare
PP_4162 +0.6 2.1 conserved membrane protein of unknown function compare
PP_3091 +0.6 4.4 conserved membrane protein of unknown function compare
PP_5054 +0.6 0.8 glutaredoxin 3 compare
PP_3089 +0.6 2.7 conserved protein of unknown function compare
PP_1803 +0.6 4.2 UDP-sugar epimerase compare
PP_4895 +0.6 1.6 tRNA dimethylallyltransferase compare
PP_3625 +0.6 1.9 Transporter, LysE family compare
PP_2939 +0.6 1.9 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_4138 +0.6 2.1 Chromate reductase compare
PP_1654 +0.6 2.0 cysteine synthase B compare
PP_4829 +0.5 2.2 putative precorrin-3B synthase compare
PP_1075 +0.5 3.4 glycerol kinase compare
PP_2496 +0.5 2.6 conserved protein of unknown function compare
PP_3137 +0.5 3.0 Glycosyl transferase, group 2 family protein compare
PP_3285 +0.5 2.6 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_3434 +0.5 1.2 conserved protein of unknown function compare
PP_0749 +0.5 2.3 conserved exported protein of unknown function compare
PP_2622 +0.5 1.6 conserved protein of unknown function compare
PP_2545 +0.5 2.3 trans-aconitate methyltransferase compare
PP_0673 +0.5 1.3 conserved protein of unknown function compare
PP_5258 +0.5 2.5 L-piperidine-6-carboxylate dehydrogenase compare
PP_4556 +0.5 1.7 conserved protein of unknown function compare
PP_1428 +0.5 1.1 Sigma factor AlgU negative regulatory protein compare
PP_1218 +0.5 2.1 putative acyl-CoA thioesterase compare
PP_0422 +0.5 2.3 Indole-3-glycerol phosphate synthase compare
PP_4700 +0.5 0.4 pantothenate synthetase compare
PP_2999 +0.5 0.9 Glyoxalase family protein compare
PP_1038 +0.5 1.5 conserved protein of unknown function compare
PP_4980 +0.5 3.1 ATP-dependent RNA helicase compare
PP_1501 +0.5 2.0 conserved protein of unknown function compare
PP_1131 +0.5 2.4 outer membrane lipoprotein compare
PP_4426 +0.5 1.2 Amino acid ABC transporter, permease protein compare
PP_3096 +0.5 3.2 conserved protein of unknown function compare
PP_4817 +0.5 2.2 MaoC domain protein compare
PP_4015 +0.5 2.4 HflD-like high frequency lysogenization protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress 1-Pentanol in Pseudomonas putida KT2440

For stress 1-Pentanol across organisms