Experiment set3IT079 for Agrobacterium fabrum C58

Compare to:

2,6-diaminopimelic acid nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu1030 -5.3 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3706 -5.1 -11.0 D-3-phosphoglycerate dehydrogenase compare
Atu3469 -4.9 -3.4 phosphoglyceromutase compare
Atu0017 -4.7 -4.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0043 -4.4 -4.1 imidazoleglycerol-phosphate dehydratase compare
Atu3707 -4.3 -4.8 phosphoserine aminotransferase compare
Atu1688 -4.3 -9.5 indole-3-glycerol-phosphate synthase compare
Atu0679 -4.0 -8.0 ATP phosphoribosyltransferase compare
Atu3739 -3.9 -4.6 phosphoglycerate kinase compare
Atu2791 -3.9 -9.2 3-isopropylmalate dehydrogenase compare
Atu0035 -3.8 -12.5 phosphoenolpyruvate carboxykinase compare
Atu2289 -3.8 -17.8 anthranilate synthase component I and II compare
Atu0678 -3.7 -7.4 histidyl-tRNA synthetase compare
Atu0099 -3.5 -16.3 prephenate dehydratase compare
Atu1359 -3.5 -2.1 dnaK deletion suppressor protein compare
Atu1750 -3.5 -7.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu2040 -3.4 -7.9 phosphoserine phosphatase compare
Atu2718 -3.4 -8.2 homoserine O-succinyltransferase compare
Atu1308 -3.4 -6.1 aspartate carbamoyl transferase catalytic subunit compare
Atu4616 -3.4 -3.0 dTDP-4-dehydrorhamnose reductase compare
Atu2709 -3.4 -17.8 3-isopropylmalate dehydratase, large subunit compare
Atu1687 -3.3 -14.1 anthranilate phosphoribosyltransferase compare
Atu2036 -3.2 -15.9 acetolactate synthase III, large subunit compare
Atu1307 -3.2 -5.9 dihydroorotase compare
Atu1205 -3.2 -16.3 threonine dehydratase compare
Atu0041 -3.2 -3.7 glutamine amidotransferase compare
Atu3740 -3.0 -9.6 fructose bisphosphate aldolase compare
Atu0537 -3.0 -7.2 histidinol dehydrogenase compare
Atu1075 -2.9 -8.1 amidophosphoribosyltransferase compare
Atu1141 -2.9 -9.2 Phosphoribosylglycinamide synthetase compare
Atu1140 -2.8 -3.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1620 -2.8 -12.4 triosephosphate isomerase compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2264 -2.7 -11.2 2-isopropylmalate synthase compare
Atu4173 -2.7 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu2017 -2.6 -2.0 hypothetical protein compare
Atu4505 -2.6 -12.4 LacI family transcriptional regulator compare
Atu1577 -2.6 -7.2 ABC transporter, substrate binding protein (amino acid) compare
Atu0030 -2.6 -2.4 phosphocarrier protein HPr compare
Atu3754 -2.5 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0400 -2.4 -4.6 orotate phosphoribosyltransferase compare
Atu0399 -2.4 -7.4 dihydroorotase compare
Atu1579 -2.3 -11.0 ABC transporter, membrane spanning protein (amino acid) compare
Atu3885 -2.3 -8.3 inositol monophosphatase compare
Atu1588 -2.3 -9.3 homoserine dehydrogenase compare
Atu1850 -2.3 -3.6 phosphoribosylformylglycinamidine synthetase II compare
Atu0723 -2.3 -3.0 FAD dependent oxidoreductase compare
Atu4614 -2.3 -10.5 glycosyltransferase compare
Atu4617 -2.3 -7.8 dTDP-D-glucose-4,6-dehydratase compare
Atu0432 -2.2 -10.8 O-succinylhomoserine sulfhydrylase compare
Atu4346 -2.2 -6.6 hypothetical protein compare
Atu2650 -2.2 -10.0 glycerol-3-phosphate dehydrogenase compare
Atu0946 -2.2 -10.2 dehydrogenase compare
Atu2747 -2.2 -14.3 hypothetical protein compare
Atu0647 -2.2 -8.2 phosphoribosylamine--glycine ligase compare
Atu1580 -2.2 -11.7 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu2790 -2.1 -3.7 3-isopropylmalate dehydratase, small subunit compare
Atu4613 -2.1 -14.6 glycosyltransferase compare
Atu2115 -2.1 -9.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4615 -2.1 -8.8 glucose-1-phosphate thymidylyltransferase compare
Atu3755 -2.0 -6.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1578 -2.0 -8.5 ABC transporter, membrane spanning protein (amino acid) compare
Atu4618 -2.0 -12.7 dTDP-rhamnose-3,5-epimerase compare
Atu3353 -2.0 -12.0 mannose-1-phosphate guanylyltransferase compare
Atu0038 -2.0 -5.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1446 -1.9 -3.6 two component response regulator compare
Atu0486 -1.9 -5.7 dihydroorotate dehydrogenase compare
Atu4711 -1.9 -8.4 two component sensor kinase compare
Atu1844 -1.9 -2.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0039 -1.8 -2.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0298 -1.8 -7.0 orotidine 5 compare
Atu0769 -1.7 -2.8 protoheme IX farnesyltransferase compare
Atu2710 -1.7 -6.4 hypothetical protein compare
Atu0947 -1.7 -5.1 transcriptional regulator, AsnC family compare
Atu1364 -1.7 -5.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3908 -1.7 -10.9 GntR family transcriptional regulator compare
Atu1845 -1.6 -4.9 phosphoribosylformylglycinamidine synthase I compare
Atu3001 -1.6 -2.4 hypothetical protein compare
Atu0346 -1.6 -4.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4153 -1.6 -9.5 aldehyde dehydrogenase compare
Atu2207 -1.6 -2.7 two component sensor kinase compare
Atu2183 -1.6 -7.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3311 -1.6 -10.5 phosphomannose isomerase compare
Atu4166 -1.5 -2.7 UDP-glucose 4-epimerase compare
Atu3912 -1.4 -6.1 hypothetical protein compare
Atu0837 -1.4 -4.7 transcriptional regulator, MarR family compare
Atu3910 -1.4 -6.5 LamB/YcsF family protein compare
Atu0086 -1.3 -1.6 ribosome-binding factor A compare
Atu3017 -1.2 -1.4 phosphoglyceromutase compare
Atu1456 -1.2 -6.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3913 -1.2 -6.3 biotin carboxylase compare
Atu4608 -1.2 -8.7 hypothetical protein compare
Atu3014 -1.2 -1.9 hypothetical protein compare
Atu4609 -1.2 -8.9 glycosyltransferase compare
Atu2113 -1.1 -3.4 N-acetylmuramoyl-L-alanine amidase compare
Atu4418 -1.1 -5.6 glutaryl-CoA dehydrogenase compare
Atu1774 -1.1 -5.3 ABC transporter, substrate binding protein (peptide) compare
Atu3009 -1.1 -1.4 exopolysaccharide production protein compare
Atu2128 -1.1 -7.7 acetolactate synthase large subunit compare
Atu1589 -1.1 -5.6 aminotransferase, class I compare
Atu2127 -1.0 -6.8 L-carnitine dehydratase compare
Atu6114 -1.0 -2.4 hypothetical protein compare
Atu0361 -1.0 -2.3 transcriptional regulator compare
Atu1846 -1.0 -1.9 hypothetical protein compare
Atu0941 -1.0 -1.1 hypothetical protein compare
Atu2376 -1.0 -0.9 hypothetical protein compare
Atu1714 -1.0 -1.7 exonuclease III compare
Atu4610 -0.9 -5.7 sugar nucleotide epimerase/dehydratase compare
Atu2155 -0.9 -7.2 methionine synthase compare
Atu3028 -0.9 -5.2 hypothetical protein compare
Atu4773 -0.9 -1.4 two component response regulator compare
Atu3012 -0.9 -1.5 hypothetical protein compare
Atu1463 -0.9 -4.3 glycine cleavage system component H compare
Atu4469 -0.9 -2.1 iron ABC transporter permease compare
Atu8054 -0.9 -0.6 hypothetical protein compare
Atu0953 -0.9 -0.9 hypothetical protein compare
Atu3763 -0.8 -1.2 hypothetical protein compare
Atu6189 -0.8 -1.0 protein secretion chaperone compare
Atu1686 -0.8 -6.1 peptidyl-prolyl cis-trans isomerse D compare
Atu1457 -0.8 -2.1 hypothetical protein compare
Atu1754 -0.8 -1.6 hypothetical protein compare
Atu0190 -0.8 -4.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1445 -0.8 -3.7 two component sensor kinase compare
Atu8088 -0.8 -1.7 hypothetical protein compare
Atu0107 -0.8 -1.8 hypothetical protein compare
Atu1028 -0.8 -2.3 hypothetical protein compare
Atu1062 -0.8 -1.5 phosphatidylserine synthase compare
Atu4873 -0.8 -4.1 TetR family transcriptional regulator compare
Atu8115 -0.8 -4.3 Hypothetical Protein compare
Atu0566 -0.8 -1.4 hypothetical protein compare
Atu1737 -0.8 -1.7 hypothetical protein compare
Atu3572 -0.8 -3.8 transcriptional regulator compare
Atu3034 -0.7 -2.7 ROK family transcriptional regulator compare
Atu2606 -0.7 -4.2 transcriptional regulator, GntR family compare
Atu2015 -0.7 -4.3 aminotransferase compare
Atu1219 -0.7 -1.0 hypothetical protein compare
Atu1848 -0.7 -3.1 transcriptional regulator, GntR family compare
Atu8034 -0.7 -3.4 hypothetical protein compare
Atu0322 -0.7 -3.8 enoyl CoA hydratase compare
Atu4887 -0.7 -3.1 hypothetical protein compare
Atu2800 -0.7 -1.6 precorrin-3B C17-methyltransferase compare
Atu4875 -0.7 -2.6 hypothetical protein compare
Atu1454 -0.7 -3.5 siroheme synthase compare
Atu1464 -0.7 -2.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu2352 -0.7 -1.3 hypothetical protein compare
Atu2235 -0.7 -1.8 hypothetical protein compare
Atu8096 -0.7 -1.5 hypothetical protein compare
Atu0722 -0.7 -2.4 hypothetical protein compare
Atu0895 -0.7 -1.7 ABC transporter, substrate binding protein compare
Atu3784 -0.7 -5.7 glutamate synthase large subunit compare
Atu3008 -0.7 -0.7 hypothetical protein compare
Atu3783 -0.7 -5.2 glutamate synthase subunit beta compare
Atu4232 -0.7 -3.1 GntR family transcriptional regulator compare
Atu4866 -0.6 -2.3 hypothetical protein compare
Atu5166 -0.6 -3.2 type IV secretion protein AvhB5 compare
Atu2796 -0.6 -2.7 precorrin-4 C11-methyltransferase compare
Atu1952 -0.6 -1.2 hypothetical protein compare
Atu4869 -0.6 -2.7 hypothetical protein compare
Atu0925 -0.6 -2.6 hypothetical protein compare
Atu2678 -0.6 -3.4 2'-5' RNA ligase compare
Atu2436 -0.6 -2.9 hypothetical protein compare
Atu4897 -0.6 -0.9 hypothetical protein compare
Atu2824 -0.6 -3.0 hypothetical protein compare
Atu4306 -0.6 -2.7 two component response regulator compare
Atu5035 -0.6 -2.7 hypothetical protein compare
Atu3010 -0.6 -3.1 hypothetical protein compare
Atu0029 -0.6 -2.3 S-adenosylhomocysteine hydrolase compare
Atu4151 -0.6 -2.8 LysR family transcriptional regulator compare
Atu4724 -0.6 -1.5 hypothetical protein compare
Atu4686 -0.6 -1.2 hypothetical protein compare
Atu3429 -0.6 -1.0 hypothetical protein compare
Atu1971 -0.6 -2.2 hypothetical protein compare
Atu2035 -0.6 -3.9 acetolactate synthase, small subunit compare
Atu4576 -0.6 -3.7 ROK family transcriptional regulator compare
Atu3032 -0.6 -2.7 hypothetical protein compare
Atu0885 -0.6 -1.8 hypothetical protein compare
Atu0211 -0.6 -2.8 hypothetical protein compare
Atu8093 -0.6 -2.6 hypothetical protein compare
Atu2209 -0.6 -1.8 pyrroline-5-carboxylate reductase compare
Atu0533 -0.6 -1.2 putative inhibitor of septum formation compare
Atu4864 -0.6 -2.9 MarR family transcriptional regulator compare
Atu3030 -0.6 -2.6 hypothetical protein compare
Atu3264 -0.5 -2.4 IclR family transcriptional regulator compare
Atu3024 -0.5 -3.7 sugar ABC transporter permease compare
Atu1470 -0.5 -0.7 Camphor resistance protein compare
Atu1031 -0.5 -1.6 hypothetical protein compare
Atu4880 -0.5 -3.5 AraC family transcriptional regulator compare
Atu6106 -0.5 -1.3 conserved hypothetical protein compare
Atu4419 -0.5 -3.2 LysR family transcriptional regulator compare
Atu2633 -0.5 -0.9 RhtB family transporter compare
Atu1462 -0.5 -3.7 glycine cleavage system protein P2 compare
Atu2140 -0.5 -1.5 hypothetical protein compare
Atu0189 -0.5 -1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu1372 -0.5 -2.4 hypothetical protein compare
Atu4868 -0.5 -3.8 oxidoreductase compare
Atu0926 -0.5 -2.3 hypothetical protein compare
Atu3015 -0.5 -2.2 hypothetical protein compare
Atu4502 -0.5 -3.2 cobalamin synthesis protein compare
Atu0846 -0.5 -1.2 transcriptional regulator, MarR family compare
Atu4391 -0.5 -2.1 nitric oxide reductase NorE protein compare


Specific Phenotypes

For 9 genes in this experiment

For nitrogen source 2,6-diaminopimelic acid in Agrobacterium fabrum C58

For nitrogen source 2,6-diaminopimelic acid across organisms