Experiment set3IT078 for Pseudomonas putida KT2440

Compare to:

LB with Butanol 0.6 vol%

200 most important genes:

  gene name fitness t score description  
PP_0164 -3.5 -4.2 conserved protein of unknown function compare
PP_1215 -3.0 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4122 -2.8 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4268 -2.8 -1.5 nucleoid-associated broad specificity regulator compare
PP_5350 -2.5 -3.7 Transcriptional regulator, RpiR family compare
PP_0218 -2.3 -6.5 Sensory box protein compare
PP_0246 -2.2 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_0065 -2.2 -3.6 NAD-binding component of TrK potassium transporter compare
PP_3840 -2.1 -1.8 conserved protein of unknown function compare
PP_0719 -2.1 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4993 -1.9 -4.8 Glutathione synthetase compare
PP_2304 -1.9 -7.1 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_5329 -1.8 -3.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4874 -1.7 -2.1 50S ribosomal protein L9 compare
PP_5483 -1.7 -2.0 conserved protein of unknown function compare
PP_2336 -1.7 -3.6 aconitate hydratase 1 compare
PP_2087 -1.6 -2.9 CmpX protein compare
PP_4129 -1.6 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4804 -1.6 -2.6 RlpA-like lipoprotein compare
PP_3052 -1.6 -1.4 conserved protein of unknown function compare
PP_4880 -1.6 -7.2 exoribonuclease R compare
PP_4054 -1.5 -1.7 conserved protein of unknown function compare
PP_2137 -1.5 -2.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_5706 -1.5 -2.7 Sec translocation complex - SecG subunit compare
PP_2356 -1.5 -6.6 putative Phytochrome family protein compare
PP_4937 -1.5 -3.4 toluene tolerance protein compare
PP_1783 -1.5 -1.9 dTDP-glucose pyrophosphorylase compare
PP_5093 -1.4 -0.9 twitching motility protein compare
PP_0393 -1.4 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5146 -1.4 -6.0 RNA pyrophosphohydrolase compare
PP_1186 -1.4 -1.9 two component system DNA-binding transcriptional dual regulator compare
PP_2370 -1.3 -2.0 conserved protein of unknown function compare
PP_2884 -1.3 -5.5 XRE family transcriptional regulator compare
PP_4989 -1.3 -2.9 Protein PilJ compare
PP_2144 -1.3 -2.7 Transcriptional regulator, TetR family compare
PP_0855 -1.3 -2.0 conserved protein of unknown function compare
PP_0848 -1.3 -2.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4799 -1.3 -2.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0035 -1.3 -2.3 putative bactoprenol-linked glycose transferase compare
PP_0888 -1.3 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_4696 -1.3 -3.2 Nitrogen regulation protein NR(I) compare
PP_1493 -1.3 -3.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0593 -1.3 -0.9 putative ribosome-binding factor compare
PP_2107 -1.3 -1.8 conserved protein of unknown function compare
PP_2196 -1.2 -2.4 agmatinase compare
PP_t49 -1.2 -4.1 tRNA-Met compare
PP_5609 -1.2 -3.5 conserved protein of unknown function compare
PP_0048 -1.2 -1.4 conserved protein of unknown function compare
PP_5248 -1.2 -1.4 putative hydrolase compare
PP_0781 -1.2 -2.9 conserved protein of unknown function compare
PP_1898 -1.2 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_2337 -1.2 -1.8 aconitate isomerase compare
PP_0834 -1.1 -1.3 Sec translocation complex subunit YajC compare
PP_t29 -1.1 -1.6 tRNA-Ala compare
PP_4018 -1.1 -2.6 Acetyltransferase, GNAT family compare
PP_5571 -1.1 -1.2 conserved protein of unknown function compare
PP_1629 -1.1 -4.3 Protein RecA compare
PP_0007 -1.1 -1.5 conserved hypothetical protein compare
PP_2309 -1.1 -1.3 conserved protein of unknown function compare
PP_3814 -1.1 -3.8 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_2378 -1.1 -1.7 Fe/S biogenesis protein NfuA compare
PP_3971 -1.1 -1.1 conserved protein of unknown function compare
PP_4961 -1.1 -1.7 putative Lipoprotein compare
PP_3384 -1.1 -2.7 gluconate 2-dehydrogenase gamma subunit compare
PP_3365 -1.1 -1.2 Acetolactate synthase compare
PP_5225 -1.1 -1.1 frataxin compare
PP_5393 -1.1 -1.1 putative metal-binding chaperone compare
PP_0775 -1.1 -1.6 conserved protein of unknown function compare
PP_0856 -1.1 -2.1 conserved lipoprotein of unknown function compare
PP_0063 -1.1 -2.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2000 -1.0 -2.0 amidophosphoribosyl transferase compare
PP_4296 -1.0 -1.5 conserved exported protein of unknown function compare
PP_0276 -1.0 -1.1 Transcriptional regulator, Cro/CI family compare
PP_0691 -1.0 -1.5 Glutamate 5-kinase compare
PP_0345 -1.0 -1.5 putative Heptose kinase WapP compare
PP_2345 -1.0 -2.6 conserved exported protein of unknown function compare
PP_0152 -1.0 -1.2 conserved exported protein of unknown function compare
PP_3637 -1.0 -1.2 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1214 -1.0 -2.3 putative transcriptional regulatory protein compare
PP_1455 -1.0 -1.9 conserved protein of unknown function compare
PP_5045 -1.0 -2.7 tRNA sulfurtransferase compare
PP_1759 -1.0 -2.9 conserved exported protein of unknown function compare
PP_1322 -1.0 -1.3 putative Lipoprotein compare
PP_3597 -1.0 -2.1 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_2720 -0.9 -1.0 conserved protein of unknown function compare
PP_4808 -0.9 -1.6 23S rRNA m3psi1915 methyltransferase compare
PP_2475 -0.9 -3.1 Transcriptional regulator, TetR family compare
PP_1233 -0.9 -2.0 sulfurtransferase compare
PP_4124 -0.9 -3.0 NADH-quinone oxidoreductase subunit G compare
PP_5054 -0.9 -1.6 glutaredoxin 3 compare
PP_5212 -0.9 -3.6 Oxidoreductase, iron-sulfur-binding compare
PP_3825 -0.9 -2.8 conserved protein of unknown function compare
PP_0087 -0.9 -1.5 conserved exported protein of unknown function compare
PP_1097 -0.9 -1.1 Methionine--tRNA ligase compare
PP_1045 -0.9 -1.2 Type II secretion pathway protein XcpP compare
PP_5240 -0.9 -1.9 Response regulator compare
PP_0319 -0.9 -1.4 conserved protein of unknown function compare
PP_1207 -0.9 -2.2 conserved protein of unknown function compare
PP_1598 -0.9 -2.5 regulatory intramembrane protein RIP zinc protease compare
PP_5486 -0.9 -1.5 conserved protein of unknown function compare
PP_4824 -0.9 -3.6 Sensor histidine kinase/response regulator compare
PP_1564 -0.9 -4.2 conserved exported protein of unknown function compare
PP_4342 -0.9 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_3398 -0.9 -2.0 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2403 -0.8 -0.7 Chemotaxis protein CheY compare
PP_5390 -0.8 -2.8 conserved hypothetical protein compare
PP_5230 -0.8 -2.0 Tyrosine recombinase XerC compare
PP_4204 -0.8 -2.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5247 -0.8 -2.5 conserved protein of unknown function compare
PP_5095 -0.8 -0.6 pyrroline-5-carboxylate reductase compare
PP_5015 -0.8 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1300 -0.8 -1.9 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0086 -0.8 -1.4 conserved protein of unknown function compare
PP_1513 -0.8 -1.3 Ribosomal RNA small subunit methyltransferase J compare
PP_0949 -0.8 -2.8 putative ATP-binding protein UPF0042 compare
PP_0905 -0.8 -1.0 conserved exported protein of unknown function compare
PP_2520 -0.8 -2.1 conserved protein of unknown function compare
PP_3800 -0.8 -3.4 conserved protein of unknown function compare
PP_2530 -0.8 -1.2 conserved protein of unknown function compare
PP_4817 -0.8 -1.5 MaoC domain protein compare
PP_5155 -0.8 -2.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1633 -0.8 -1.9 conserved exported protein of unknown function compare
PP_2253 -0.8 -1.3 Transcriptional regulator, GntR family compare
PP_3877 -0.8 -2.9 conserved protein of unknown function compare
PP_4131 -0.8 -2.7 NADH-quinone oxidoreductase subunit N compare
PP_2071 -0.8 -3.2 conserved protein of unknown function compare
PP_1255 -0.8 -1.6 putative cis-4-hydroxy-D-proline oxidase compare
PP_1812 -0.8 -1.4 conserved protein of unknown function compare
PP_2625 -0.7 -1.8 conserved exported protein of unknown function compare
PP_5073 -0.7 -1.0 conserved exported protein of unknown function compare
PP_1584 -0.7 -3.4 conserved protein of unknown function compare
PP_2031 -0.7 -1.6 conserved protein of unknown function compare
PP_0801 -0.7 -0.9 conserved exported protein of unknown function compare
PP_4156 -0.7 -1.1 Transcriptional regulator, LysR family compare
PP_0770 -0.7 -1.8 PemI-like protein compare
PP_2409 -0.7 -2.1 cobalt-zinc-cadmium resistance protein compare
PP_4982 -0.7 -2.9 putative cytochrome b561, iron-regulated compare
PP_1561 -0.7 -3.1 putative Phage holin compare
PP_2254 -0.7 -2.8 Transcriptional regulator, GntR family compare
PP_3043 -0.7 -1.5 conserved protein of unknown function compare
PP_0001 -0.7 -1.3 probable chromosome-partitioning protein compare
PP_2350 -0.7 -2.9 LysR family transcriptional regulator compare
PP_1062 -0.7 -1.5 MutT/nudix family protein compare
PP_4168 -0.7 -1.9 conserved protein of unknown function compare
PP_1269 -0.7 -0.8 Universal stress protein family compare
PP_2118 -0.7 -1.6 conserved protein of unknown function compare
PP_4843 -0.7 -3.3 putative Urea ABC transporter, permease protein compare
PP_5712 -0.7 -1.8 conserved protein of unknown function compare
PP_0022 -0.7 -0.7 hypothetical protein compare
PP_0989 -0.7 -0.8 glycine cleavage system H protein 1 compare
PP_2152 -0.7 -1.6 glycerophosphoryl diester phosphodiesterase compare
PP_0676 -0.7 -2.3 putative Transcription elongation factor compare
PP_5569 -0.7 -1.4 protein of unknown function of phage origin compare
PP_5686 -0.7 -1.2 protein of unknown function compare
PP_0630 -0.7 -0.7 DNA gyrase inhibitor YacG compare
PP_4528 -0.7 -1.4 conserved protein of unknown function compare
PP_4546 -0.7 -1.9 ATP-dependent helicase HrpA compare
PP_3204 -0.7 -1.2 conserved protein of unknown function compare
PP_5227 -0.7 -3.0 diaminopimelate decarboxylase compare
PP_5176 -0.7 -1.7 conserved protein of unknown function compare
PP_0262 -0.7 -1.8 conserved protein of unknown function compare
PP_4121 -0.7 -2.2 NADH-quinone oxidoreductase subunit C/D compare
PP_4697 -0.7 -1.4 poly(A) polymerase compare
PP_2611 -0.7 -1.2 membrane protein of unknown function compare
PP_3621 -0.7 -2.6 vanillin dehydrogenase, iorA-like component (from data) compare
PP_0425 -0.7 -1.4 conserved protein of unknown function compare
PP_1713 -0.7 -0.8 Transcriptional regulator PcaQ compare
PP_2723 -0.6 -1.7 Uncharacterized oxidoreductase YhdF compare
PP_1193 -0.6 -2.3 conserved membrane protein of unknown function compare
PP_0244 -0.6 -1.8 conserved protein of unknown function compare
PP_4444 -0.6 -1.4 transposase compare
PP_1548 -0.6 -1.0 conserved protein of unknown function compare
PP_3722 -0.6 -3.3 Alanine racemase compare
PP_4943 -0.6 -1.4 putative Glycosyl transferase compare
PP_3935 -0.6 -1.8 conserved protein of unknown function compare
PP_2846 -0.6 -2.2 urease accessory protein compare
PP_0368 -0.6 -3.1 putative Acyl-CoA dehydrogenase compare
PP_1258 -0.6 -1.8 4-hydroxyproline epimerase compare
PP_1176 -0.6 -1.3 conserved protein of unknown function compare
PP_2217 -0.6 -1.4 enoyl-CoA hydratase compare
PP_3640 -0.6 -1.8 Transcriptional regulator, AraC family compare
PP_4471 -0.6 -1.9 Magnesium transporter compare
PP_5717 -0.6 -0.9 conserved protein of unknown function compare
PP_1524 -0.6 -3.0 23S rRNA m1G745 methyltransferase compare
PP_1860 -0.6 -1.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_1353 -0.6 -1.0 conserved membrane protein of unknown function compare
PP_3662 -0.6 -3.1 conserved protein of unknown function compare
PP_3933 -0.6 -2.3 conserved membrane protein of unknown function compare
PP_2174 -0.6 -3.0 conserved protein of unknown function compare
PP_3017 -0.6 -2.4 O6-methylguanine-DNA methyltransferase compare
PP_1702 -0.6 -1.6 Recombination-associated protein RdgC compare
PP_0361 -0.6 -1.4 putative Competence protein ComF compare
PP_1325 -0.6 -2.8 putative lipoprotein compare
PP_4835 -0.6 -1.7 conserved exported protein of unknown function compare
PP_0937 -0.6 -2.1 endoribonuclease G (RNAse G) compare
PP_0401 -0.6 -1.2 Ribosomal RNA small subunit methyltransferase A compare
PP_1734 -0.6 -1.6 Probable septum site-determining protein MinC compare
PP_5658 -0.6 -1.0 protein of unknown function compare
PP_0916 -0.6 -1.3 Amino acid transporter LysE compare
PP_2215 -0.6 -1.6 acetyl-CoA acetyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Butanol in Pseudomonas putida KT2440

For stress Butanol across organisms