Experiment set3IT077 for Pseudomonas putida KT2440

Compare to:

LB with Isobutyl alcohol 0.6 vol%

200 most important genes:

  gene name fitness t score description  
PP_0164 -3.5 -5.3 conserved protein of unknown function compare
PP_0218 -3.4 -10.4 Sensory box protein compare
PP_4937 -3.4 -4.0 toluene tolerance protein compare
PP_0345 -2.5 -4.9 putative Heptose kinase WapP compare
PP_4247 -2.4 -2.7 Exonuclease compare
PP_0846 -2.2 -2.5 DnaK-like molecular chaperone specific for IscU compare
PP_1994 -2.2 -3.1 tRNA pseudouridine (38-40)synthase compare
PP_1468 -2.1 -3.2 Tyrosine recombinase XerD compare
PP_5706 -2.0 -3.1 Sec translocation complex - SecG subunit compare
PP_2378 -1.9 -2.5 Fe/S biogenesis protein NfuA compare
PP_4362 -1.9 -3.1 conserved protein of unknown function compare
PP_5225 -1.9 -1.8 frataxin compare
PP_4130 -1.9 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4880 -1.8 -7.9 exoribonuclease R compare
PP_5329 -1.8 -4.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2136 -1.8 -3.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4131 -1.7 -5.5 NADH-quinone oxidoreductase subunit N compare
PP_3935 -1.7 -5.0 conserved protein of unknown function compare
PP_0719 -1.7 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0888 -1.7 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_4993 -1.7 -4.5 Glutathione synthetase compare
PP_0833 -1.7 -1.5 queuine tRNA-ribosyltransferase compare
PP_0276 -1.6 -1.6 Transcriptional regulator, Cro/CI family compare
PP_2144 -1.6 -4.0 Transcriptional regulator, TetR family compare
PP_4268 -1.6 -1.6 nucleoid-associated broad specificity regulator compare
PP_2000 -1.6 -2.8 amidophosphoribosyl transferase compare
PP_4199 -1.5 -1.2 putative Lipoprotein compare
PP_4999 -1.5 -1.4 dihydroorotase-like protein compare
PP_0872 -1.5 -5.6 Peptide chain release factor 3 compare
PP_4273 -1.5 -1.7 Transcriptional regulator, MerR family compare
PP_1783 -1.4 -1.8 dTDP-glucose pyrophosphorylase compare
PP_2356 -1.4 -6.2 putative Phytochrome family protein compare
PP_5146 -1.4 -6.9 RNA pyrophosphohydrolase compare
PP_1215 -1.4 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_4942 -1.4 -2.3 conserved protein of unknown function compare
PP_2884 -1.3 -5.2 XRE family transcriptional regulator compare
PP_4696 -1.3 -4.3 Nitrogen regulation protein NR(I) compare
PP_5017 -1.3 -1.7 Sec-independent protein translocase protein TatB compare
PP_1217 -1.3 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5486 -1.2 -2.3 conserved protein of unknown function compare
PP_2336 -1.2 -3.2 aconitate hydratase 1 compare
PP_4824 -1.2 -4.8 Sensor histidine kinase/response regulator compare
PP_1128 -1.2 -3.2 OmpA family protein compare
PP_4532 -1.1 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1366 -1.1 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_3539 -1.1 -2.5 putative Transcriptional regulator compare
PP_3487 -1.1 -2.9 conserved exported protein of unknown function compare
PP_4121 -1.1 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_0368 -1.1 -5.2 putative Acyl-CoA dehydrogenase compare
PP_5350 -1.1 -3.0 Transcriptional regulator, RpiR family compare
PP_0834 -1.1 -2.2 Sec translocation complex subunit YajC compare
PP_4944 -1.1 -3.9 Carbamoyltransferase compare
PP_2304 -1.1 -4.8 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_0063 -1.0 -3.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2684 -1.0 -3.1 conserved membrane protein of unknown function compare
PP_0832 -1.0 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5327 -1.0 -3.1 putative phosphate ABC transporter, permease subunit compare
PP_1736 -1.0 -2.4 conserved protein of unknown function compare
PP_4124 -1.0 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_4917 -1.0 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3580 -1.0 -1.0 conserved protein of unknown function compare
PP_2403 -1.0 -1.6 Chemotaxis protein CheY compare
PP_2475 -1.0 -3.4 Transcriptional regulator, TetR family compare
PP_5441 -1.0 -3.1 protein of unknown function compare
PP_1763 -1.0 -2.2 putative oxidoreductase compare
PP_1020 -1.0 -2.4 putative glucose-6-phosphate 1-epimerase compare
PP_1678 -1.0 -3.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2354 -1.0 -5.4 Sensory box histidine kinase/response regulator compare
PP_1096 -0.9 -1.6 putative electron transport complex protein compare
PP_4196 -0.9 -1.3 conserved exported protein of unknown function compare
PP_2572 -0.9 -3.1 conserved protein of unknown function compare
PP_4236 -0.9 -2.8 putative Thiol:disulfide interchange protein dsbE compare
PP_0339 -0.9 -2.4 Pyruvate dehydrogenase E1 component compare
PP_1045 -0.9 -2.1 Type II secretion pathway protein XcpP compare
PP_2908 -0.9 -3.0 DNA-binding transcriptional repressor compare
PP_0346 -0.9 -4.2 putative Heptose kinase WapQ compare
PP_2907 -0.9 -1.9 DNA-binding response regulator compare
PP_0001 -0.9 -1.1 probable chromosome-partitioning protein compare
PP_3307 -0.9 -1.7 conserved protein of unknown function compare
PP_1004 -0.9 -2.6 conserved protein of unknown function compare
PP_5227 -0.9 -4.6 diaminopimelate decarboxylase compare
PP_5338 -0.9 -1.5 aspartate ammonia-lyase compare
PP_3726 -0.9 -1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_4342 -0.8 -2.0 flagellar synthesis regulator, putative ATPase compare
PP_1186 -0.8 -1.3 two component system DNA-binding transcriptional dual regulator compare
PP_4837 -0.8 -1.6 conserved protein of unknown function compare
PP_2379 -0.8 -2.2 putative cytochrome oxidase biogenesis protein compare
PP_4004 -0.8 -2.4 DNA translocase FtsK compare
PP_5157 -0.8 -2.4 conserved exported protein of unknown function compare
PP_t49 -0.8 -2.6 tRNA-Met compare
PP_4226 -0.8 -2.9 conserved protein of unknown function compare
PP_0377 -0.8 -1.3 coenzyme PQQ synthesis protein D compare
PP_4529 -0.8 -2.1 conserved protein of unknown function compare
PP_5045 -0.8 -2.4 tRNA sulfurtransferase compare
PP_2718 -0.8 -1.3 arsenic resistance transcriptional regulator compare
PP_1454 -0.8 -1.8 conserved protein of unknown function compare
PP_3192 -0.8 -2.8 conserved protein of unknown function compare
PP_1528 -0.8 -1.3 conserved protein of unknown function compare
PP_1733 -0.8 -1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4666 -0.8 -3.6 3-hydroxyisobutyrate dehydrogenase compare
PP_2370 -0.7 -2.1 conserved protein of unknown function compare
PP_3649 -0.7 -1.9 Transcriptional regulator, GntR family compare
PP_4699 -0.7 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1216 -0.7 -1.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4770 -0.7 -4.2 conserved protein of unknown function compare
PP_3899 -0.7 -1.7 conserved protein of unknown function, hicB family compare
PP_2665 -0.7 -2.9 Glycerol metabolism activator compare
PP_2677 -0.7 -1.5 conserved exported protein of unknown function compare
PP_3035 -0.7 -1.4 conserved protein of unknown function compare
PP_1564 -0.7 -2.7 conserved exported protein of unknown function compare
PP_1598 -0.7 -2.5 regulatory intramembrane protein RIP zinc protease compare
PP_3476 -0.7 -3.5 Type II secretion system protein G compare
PP_0691 -0.7 -1.6 Glutamate 5-kinase compare
PP_5748 -0.7 -1.5 cytochrome c heme lyase subunit compare
PP_1493 -0.7 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5093 -0.7 -1.1 twitching motility protein compare
PP_5090 -0.7 -1.0 putative cell division protein compare
PP_3662 -0.7 -3.4 conserved protein of unknown function compare
PP_3333 -0.7 -2.0 conserved protein of unknown function compare
PP_3411 -0.7 -1.2 conserved protein of unknown function compare
PP_4143 -0.7 -1.8 conserved protein of unknown function compare
PP_1788 -0.7 -2.0 conserved protein of unknown function compare
PP_2309 -0.7 -1.0 conserved protein of unknown function compare
PP_1864 -0.7 -1.5 conserved protein of unknown function compare
PP_4799 -0.7 -1.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4136 -0.7 -0.9 Transcriptional regulator, LuxR family compare
PP_4168 -0.7 -2.5 conserved protein of unknown function compare
PP_1976 -0.7 -2.9 HlyD family secretion protein compare
PP_2337 -0.7 -1.1 aconitate isomerase compare
PP_3232 -0.7 -2.8 Acetyltransferase, GNAT family compare
PP_4517 -0.7 -1.0 conserved protein of unknown function compare
PP_1513 -0.7 -0.8 Ribosomal RNA small subunit methyltransferase J compare
PP_4204 -0.6 -1.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4575 -0.6 -1.5 Urea amidolyase-related protein compare
PP_2848 -0.6 -2.2 urease accessory protein compare
PP_5422 -0.6 -1.3 hypothetical protein compare
PP_3451 -0.6 -2.7 conserved exported protein of unknown function compare
PP_5557 -0.6 -1.6 protein of unknown function compare
PP_5328 -0.6 -1.3 putative phosphate transport system permease protein compare
PP_3806 -0.6 -1.1 Hydrolase, isochorismatase family compare
PP_3237 -0.6 -1.7 Universal stress protein family compare
PP_1054 -0.6 -1.1 Type II secretion pathway protein XcpZ compare
PP_3040 -0.6 -2.1 Pyocin R2_PP, holin compare
PP_2060 -0.6 -1.6 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1629 -0.6 -2.7 Protein RecA compare
PP_4818 -0.6 -1.9 ribosomal protein L11 methyltransferase compare
PP_2396 -0.6 -2.3 conserved exported protein of unknown function compare
PP_3621 -0.6 -3.0 vanillin dehydrogenase, iorA-like component (from data) compare
PP_4613 -0.6 -4.2 outer membrane ferric citrate porin compare
PP_1214 -0.6 -1.1 putative transcriptional regulatory protein compare
PP_4471 -0.6 -2.1 Magnesium transporter compare
PP_0627 -0.6 -1.6 conserved protein of unknown function compare
PP_0938 -0.6 -3.4 conserved protein of unknown function compare
PP_4251 -0.6 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_4953 -0.6 -2.0 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_t10 -0.6 -1.1 tRNA-Pro compare
PP_5674 -0.6 -1.4 conserved protein of unknown function compare
PP_3384 -0.6 -1.9 gluconate 2-dehydrogenase gamma subunit compare
PP_1963 -0.6 -2.3 conserved protein of unknown function compare
PP_1088 -0.6 -3.1 Argininosuccinate synthase compare
PP_3813 -0.6 -2.9 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_1716 -0.6 -0.7 Transcriptional regulator, Cro/CI family compare
PP_4129 -0.6 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2207 -0.6 -2.1 conserved membrane protein of unknown function compare
PP_5339 -0.6 -1.8 transcriptional regulator, ornithine utilization compare
PP_1036 -0.6 -3.2 membrane-bound lytic murein transglycosylase F compare
PP_4766 -0.6 -2.8 ATP-dependent RNA helicase compare
PP_2031 -0.6 -0.9 conserved protein of unknown function compare
PP_0855 -0.6 -1.3 conserved protein of unknown function compare
PP_2032 -0.6 -2.1 putative ATPase compare
PP_3002 -0.6 -2.0 shikimate dehydrogenase-related enzyme compare
PP_3017 -0.6 -2.4 O6-methylguanine-DNA methyltransferase compare
PP_5331 -0.6 -1.1 Long-chain acyl-CoA thioester hydrolase compare
PP_2087 -0.6 -1.3 CmpX protein compare
PP_0781 -0.6 -1.9 conserved protein of unknown function compare
PP_3946 -0.6 -0.6 HTH-type transcriptional repressor NicR compare
PP_1515 -0.6 -2.5 Transcriptional regulator, tetR family compare
PP_1644 -0.6 -2.6 NAD(P)H dehydrogenase (quinone) compare
PP_4479 -0.6 -2.1 arginine N-succinyltransferase, subunit beta compare
PP_5689 -0.6 -2.2 conserved protein of unknown function compare
PP_3315 -0.6 -1.4 conserved membrane protein of unknown function compare
PP_2330 -0.6 -2.0 conserved protein of unknown function compare
PP_4452 -0.6 -2.3 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_4264 -0.6 -3.2 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2533 -0.6 -2.2 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_2023 -0.6 -1.2 Glutathione S-transferase family protein compare
PP_0321 -0.6 -2.8 low specificity L-threonine aldolase compare
PP_4838 -0.6 -4.1 Outer membrane copper receptor OprC compare
PP_2499 -0.5 -0.5 conserved protein of unknown function compare
PP_3707 -0.5 -2.3 conserved protein of unknown function compare
PP_2762 -0.5 -2.9 acyl-CoA dehydrogenase/oxidase family protein compare
PP_5543 -0.5 -2.4 protein of unknown function compare
PP_4271 -0.5 -0.7 conserved protein of unknown function compare
PP_2959 -0.5 -1.8 Alkylhydroperoxidase AhpD domain protein compare
PP_2490 -0.5 -2.2 Flavoprotein compare
PP_5295 -0.5 -1.1 conserved protein of unknown function compare
PP_0042 -0.5 -2.3 conserved exported protein of unknown function compare
PP_3551 -0.5 -0.9 DNA-binding response regulator, LuxR family compare
PP_2327 -0.5 -1.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0236 -0.5 -1.6 NAD(P)H-dependent FMN reductase subunit compare


Specific Phenotypes

For 1 genes in this experiment

For stress Isobutyl alcohol in Pseudomonas putida KT2440

For stress Isobutyl alcohol across organisms