Experiment set3IT077 for Pseudomonas sp. RS175

Compare to:

caffeic acid carbon source 2.5 mM

200 most important genes:

  gene name fitness t score description  
PFR28_02823 -7.0 -3.9 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_02824 -5.0 -9.1 3-isopropylmalate dehydratase large subunit compare
PFR28_03714 -4.9 -19.0 RNA polymerase-binding transcription factor DksA compare
PFR28_04929 -4.6 -9.1 Histidine biosynthesis bifunctional protein HisB compare
PFR28_02821 -4.4 -22.9 3-isopropylmalate dehydrogenase compare
PFR28_02719 -4.3 -5.1 Integration host factor subunit alpha compare
PFR28_01366 -4.2 -12.2 Sulfite reductase [ferredoxin] compare
PFR28_05244 -4.1 -20.4 Copper-exporting P-type ATPase compare
PFR28_00621 -4.0 -13.2 3-oxoadipate CoA-transferase subunit B compare
PFR28_02449 -4.0 -15.4 putative branched-chain-amino-acid aminotransferase compare
PFR28_04932 -3.9 -6.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_03657 -3.8 -6.9 Beta-barrel assembly-enhancing protease compare
PFR28_00626 -3.8 -3.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PFR28_04930 -3.8 -11.9 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03697 -3.7 -16.5 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_01930 -3.7 -5.6 HTH-type transcriptional regulator McbR compare
PFR28_02616 -3.7 -20.8 Isocitrate dehydrogenase [NADP] compare
PFR28_02608 -3.6 -3.5 DNA translocase FtsK compare
PFR28_02811 -3.6 -8.6 Amidophosphoribosyltransferase compare
PFR28_04832 -3.6 -15.6 putative phosphatase compare
PFR28_02810 -3.6 -16.9 O-succinylhomoserine sulfhydrylase compare
PFR28_04517 -3.5 -16.9 Oxaloacetate decarboxylase alpha chain compare
PFR28_04202 -3.5 -9.0 5,10-methylenetetrahydrofolate reductase compare
PFR28_03363 -3.5 -19.1 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_01365 -3.5 -7.6 hypothetical protein compare
PFR28_00851 -3.5 -4.3 Flagellum site-determining protein YlxH compare
PFR28_04564 -3.5 -14.8 Aspartate-semialdehyde dehydrogenase compare
PFR28_04565 -3.5 -17.3 Protein RarD compare
PFR28_04278 -3.4 -15.2 Dihydroxy-acid dehydratase compare
PFR28_03223 -3.4 -17.2 GTP pyrophosphokinase compare
PFR28_00188 -3.4 -12.8 Histidinol-phosphate aminotransferase compare
PFR28_01838 -3.4 -7.7 Vanillin dehydrogenase compare
PFR28_01839 -3.4 -15.9 Long-chain-fatty-acid--CoA ligase FadD15 compare
PFR28_04566 -3.4 -15.4 4-chloro-allylglycine synthase compare
PFR28_05078 -3.4 -4.8 hypothetical protein compare
PFR28_04246 -3.3 -11.4 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_00618 -3.3 -15.7 Pca regulon regulatory protein compare
PFR28_00186 -3.3 -7.5 ATP phosphoribosyltransferase compare
PFR28_01142 -3.3 -18.9 Transaldolase compare
PFR28_05015 -3.3 -23.2 Glutamate synthase [NADPH] large chain compare
PFR28_03699 -3.2 -8.8 Acetolactate synthase isozyme 3 large subunit compare
PFR28_04068 -3.2 -21.0 hypothetical protein compare
PFR28_01837 -3.2 -13.3 Hydroxycinnamoyl-CoA hydratase-lyase compare
PFR28_03552 -3.2 -13.7 hypothetical protein compare
PFR28_00624 -3.2 -7.9 Protocatechuate 3,4-dioxygenase alpha chain compare
PFR28_04308 -3.2 -4.3 Amino-acid acetyltransferase compare
PFR28_05067 -3.2 -6.1 hypothetical protein compare
PFR28_01040 -3.2 -11.4 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PFR28_03282 -3.2 -12.1 Arginine N-succinyltransferase subunit alpha compare
PFR28_04933 -3.2 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_04518 -3.1 -11.9 2-oxoglutarate carboxylase small subunit compare
PFR28_04986 -3.1 -7.9 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_01113 -3.1 -4.7 DNA topoisomerase 1 compare
PFR28_00627 -3.1 -10.9 3-oxoadipate enol-lactonase 2 compare
PFR28_04485 -3.1 -5.0 Phosphate-specific transport system accessory protein PhoU compare
PFR28_04070 -3.1 -19.3 hypothetical protein compare
PFR28_00187 -3.1 -14.3 Histidinol dehydrogenase compare
PFR28_05125 -3.1 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_03635 -3.0 -7.0 Malate:quinone oxidoreductase compare
PFR28_00628 -3.0 -3.6 hypothetical protein compare
PFR28_03724 -3.0 -11.7 Glucose-6-phosphate isomerase compare
PFR28_00193 -3.0 -15.6 Sulfate adenylyltransferase subunit 2 compare
PFR28_00305 -3.0 -11.9 2-isopropylmalate synthase compare
PFR28_04245 -3.0 -13.6 Homoserine O-succinyltransferase compare
PFR28_05016 -3.0 -15.2 Glutamate synthase [NADPH] small chain compare
PFR28_00620 -2.9 -11.2 3-oxoadipate CoA-transferase subunit A compare
PFR28_04834 -2.9 -15.8 L-threonine dehydratase biosynthetic IlvA compare
PFR28_03698 -2.9 -10.8 Acetolactate synthase isozyme 3 small subunit compare
PFR28_02603 -2.9 -8.3 Siroheme synthase compare
PFR28_00403 -2.9 -8.4 Regulator of sigma-E protease RseP compare
PFR28_01118 -2.8 -4.8 hypothetical protein compare
PFR28_04985 -2.8 -5.0 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04071 -2.8 -2.0 Multifunctional CCA protein compare
PFR28_00194 -2.7 -14.0 Bifunctional enzyme CysN/CysC compare
PFR28_00547 -2.7 -5.8 hypothetical protein compare
PFR28_00913 -2.7 -7.7 Integration host factor subunit beta compare
PFR28_04830 -2.7 -16.2 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00069 -2.7 -7.9 Outer membrane protein assembly factor BamE compare
PFR28_03837 -2.7 -8.6 Leucine-responsive regulatory protein compare
PFR28_01265 -2.7 -12.6 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_04069 -2.7 -15.7 hypothetical protein compare
PFR28_05105 -2.6 -10.1 Phosphoserine phosphatase SerB2 compare
PFR28_00983 -2.6 -11.2 Protease HtpX compare
PFR28_00633 -2.6 -13.8 HTH-type transcriptional regulator TtgR compare
PFR28_00427 -2.6 -16.5 RNA polymerase sigma factor RpoS compare
PFR28_04208 -2.6 -7.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_03860 -2.6 -4.7 putative murein peptide carboxypeptidase compare
PFR28_00623 -2.5 -6.0 Protocatechuate 3,4-dioxygenase beta chain compare
PFR28_03653 -2.5 -5.3 Molybdopterin-synthase adenylyltransferase compare
PFR28_00170 -2.5 -7.4 RNase adapter protein RapZ compare
PFR28_00730 -2.5 -4.6 5-oxoprolinase subunit C compare
PFR28_04423 -2.5 -4.2 DNA-directed RNA polymerase subunit omega compare
PFR28_00695 -2.5 -2.2 Sulfur carrier protein TusA compare
PFR28_00976 -2.4 -12.0 hypothetical protein compare
PFR28_04569 -2.4 -8.1 HTH-type transcriptional regulator CdhR compare
PFR28_04380 -2.4 -3.2 Transcriptional regulator SutA compare
PFR28_00729 -2.4 -13.1 5-oxoprolinase subunit B compare
PFR28_00839 -2.4 -7.0 hypothetical protein compare
PFR28_02831 -2.4 -9.6 hypothetical protein compare
PFR28_04103 -2.4 -9.4 Biotin synthase compare
PFR28_03883 -2.4 -8.6 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_02446 -2.3 -13.8 2-oxoisovalerate dehydrogenase subunit beta compare
PFR28_02727 -2.3 -3.4 Cold shock protein CapB compare
PFR28_04936 -2.3 -5.5 Carboxy-terminal processing protease CtpB compare
PFR28_04903 -2.3 -7.7 hypothetical protein compare
PFR28_01114 -2.3 -7.1 hypothetical protein compare
PFR28_00980 -2.3 -3.0 ATP-dependent RNA helicase DeaD compare
PFR28_00068 -2.3 -1.8 hypothetical protein compare
PFR28_00405 -2.3 -3.1 hypothetical protein compare
PFR28_04842 -2.3 -7.3 D-3-phosphoglycerate dehydrogenase compare
PFR28_02484 -2.3 -7.6 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_00690 -2.2 -7.7 RNA polymerase sigma-H factor compare
PFR28_02613 -2.2 -12.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_02127 -2.2 -1.5 hypothetical protein compare
PFR28_01370 -2.2 -21.1 hypothetical protein compare
PFR28_03217 -2.2 -3.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_03721 -2.2 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_03169 -2.2 -9.5 Tail-specific protease compare
PFR28_03237 -2.2 -12.9 Inner membrane protein YohC compare
PFR28_04567 -2.1 -11.4 hypothetical protein compare
PFR28_04377 -2.1 -7.4 hypothetical protein compare
PFR28_04628 -2.1 -3.6 Thiol:disulfide interchange protein DsbA compare
PFR28_00728 -2.1 -9.0 5-oxoprolinase subunit A 3 compare
PFR28_02960 -2.1 -7.9 hypothetical protein compare
PFR28_03266 -2.1 -4.3 hypothetical protein compare
PFR28_05139 -2.1 -3.5 hypothetical protein compare
PFR28_00098 -2.1 -8.0 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03413 -2.1 -4.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_01258 -2.1 -5.2 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
PFR28_05062 -2.1 -11.9 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_00602 -2.0 -1.9 hypothetical protein compare
PFR28_02925 -2.0 -12.6 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) compare
PFR28_05068 -2.0 -5.8 hypothetical protein compare
PFR28_02445 -2.0 -9.4 2-oxoisovalerate dehydrogenase subunit alpha compare
PFR28_04102 -2.0 -9.5 8-amino-7-oxononanoate synthase compare
PFR28_03427 -2.0 -7.9 Sensor histidine kinase RcsC compare
PFR28_04481 -2.0 -9.8 hypothetical protein compare
PFR28_00493 -2.0 -7.5 hypothetical protein compare
PFR28_03846 -1.9 -6.6 hypothetical protein compare
PFR28_00179 -1.9 -8.3 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_03388 -1.9 -11.0 Quinolinate synthase A compare
PFR28_00926 -1.9 -2.8 hypothetical protein compare
PFR28_03086 -1.9 -12.5 Chaperone protein HtpG compare
PFR28_01460 -1.9 -1.7 Glutamine transport ATP-binding protein GlnQ compare
PFR28_03718 -1.9 -4.6 Transcriptional regulatory protein ZraR compare
PFR28_02447 -1.9 -6.6 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PFR28_03420 -1.9 -4.9 hypothetical protein compare
PFR28_01362 -1.9 -3.3 hypothetical protein compare
PFR28_00975 -1.9 -7.7 HTH-type transcriptional regulator HdfR compare
PFR28_04345 -1.9 -13.0 Polyphosphate kinase compare
PFR28_03130 -1.9 -3.6 Streptothricin hydrolase compare
PFR28_03227 -1.9 -6.7 Signal transduction histidine-protein kinase BarA compare
PFR28_03414 -1.8 -3.5 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_03704 -1.8 -11.6 hypothetical protein compare
PFR28_03696 -1.8 -10.7 hypothetical protein compare
PFR28_02506 -1.8 -11.1 'Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase' transl_table=11 compare
PFR28_01233 -1.8 -5.8 hypothetical protein compare
PFR28_03151 -1.8 -2.4 Septum site-determining protein MinC compare
PFR28_03493 -1.8 -13.2 hypothetical protein compare
PFR28_00371 -1.7 -6.2 hypothetical protein compare
PFR28_00837 -1.7 -6.0 hypothetical protein compare
PFR28_00169 -1.7 -4.8 Phosphocarrier protein NPr compare
PFR28_00622 -1.7 -1.9 Beta-ketoadipyl-CoA thiolase compare
PFR28_04052 -1.7 -13.0 hypothetical protein compare
PFR28_03412 -1.7 -5.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_04902 -1.7 -6.7 Inner membrane protein YgaZ compare
PFR28_00688 -1.7 -2.1 hypothetical protein compare
PFR28_01855 -1.6 -1.9 Hypoxic response protein 1 compare
PFR28_04100 -1.6 -7.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_03719 -1.6 -5.7 Poly(A) polymerase I compare
PFR28_04958 -1.6 -2.2 hypothetical protein compare
PFR28_03784 -1.6 -7.4 Energy-dependent translational throttle protein EttA compare
PFR28_00271 -1.6 -3.5 hypothetical protein compare
PFR28_01410 -1.6 -6.0 Response regulator GacA compare
PFR28_05204 -1.6 -3.5 Sulfite reductase [ferredoxin] compare
PFR28_03779 -1.6 -11.8 hypothetical protein compare
PFR28_01259 -1.6 -7.9 Methylmalonyl-CoA carboxyltransferase 12S subunit compare
PFR28_00277 -1.6 -2.1 Queuine tRNA-ribosyltransferase compare
PFR28_01260 -1.6 -9.7 Acyl-CoA dehydrogenase compare
PFR28_01914 -1.6 -5.5 HTH-type transcriptional repressor RspR compare
PFR28_04054 -1.6 -8.1 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_04691 -1.5 -8.7 hypothetical protein compare
PFR28_00988 -1.5 -7.6 Sensor histidine kinase RcsC compare
PFR28_00615 -1.5 -6.7 hypothetical protein compare
PFR28_02510 -1.5 -2.0 Chemotaxis protein CheY compare
PFR28_00625 -1.5 -9.3 Alpha-ketoglutarate permease compare
PFR28_00802 -1.5 -7.4 Phenylalanine-4-hydroxylase compare
PFR28_03959 -1.5 -9.4 Outer membrane protein W compare
PFR28_04435 -1.5 -7.1 ATP-dependent DNA helicase RecG compare
PFR28_03102 -1.5 -10.2 Cation/acetate symporter ActP compare
PFR28_02924 -1.5 -3.0 2-methyl-aconitate isomerase compare
PFR28_04753 -1.5 -8.9 hypothetical protein compare
PFR28_01257 -1.5 -8.3 Acetyl-/propionyl-coenzyme A carboxylase alpha chain compare
PFR28_04171 -1.5 -6.3 putative transport protein HsrA compare
PFR28_01313 -1.5 -4.5 hypothetical protein compare
PFR28_03856 -1.5 -4.3 LPS-assembly lipoprotein LptE compare
PFR28_01672 -1.4 -3.9 hypothetical protein compare
PFR28_04965 -1.4 -10.0 Urocanate hydratase compare
PFR28_01378 -1.4 -4.2 Magnesium-chelatase 38 kDa subunit compare
PFR28_00425 -1.4 -9.0 Protein-L-isoaspartate O-methyltransferase compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source caffeic acid in Pseudomonas sp. RS175

For carbon source caffeic acid across organisms