Experiment set3IT076 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6D2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF267 -5.3 -11.8 Transcriptional activator RfaH compare
GFF4601 -4.9 -4.7 Phosphoglucomutase (EC 5.4.2.2) compare
GFF2808 -4.7 -9.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF2213 -3.3 -9.1 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF1832 -2.9 -10.4 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF20 -2.8 -6.1 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF1830 -2.7 -12.7 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF1088 -2.7 -1.4 FIG01045785: hypothetical protein compare
GFF1634 -2.4 -4.0 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF2436 -2.2 -3.5 Iron-sulfur cluster regulator IscR compare
GFF2047 -2.2 -9.1 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF4355 -2.0 -1.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF4250 -1.9 -1.1 Putative copper chaperone compare
GFF4314 -1.8 -1.3 hypothetical protein compare
GFF388 -1.8 -8.6 Lipopolysaccharide 1,2-N-acetylglucosaminetransferase (EC 2.4.1.56) compare
GFF603 -1.8 -4.2 NfuA Fe-S protein maturation compare
GFF4158 -1.7 -1.8 tmRNA-binding protein SmpB compare
GFF3667 -1.7 -2.5 Cytidylate kinase (EC 2.7.4.25) compare
GFF2690 -1.5 -2.2 Peptide transport system permease protein SapC compare
GFF1334 -1.4 -1.4 Uncharacterized protein YohL compare
GFF4698 -1.3 -3.0 PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69) compare
GFF1884 -1.3 -1.6 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF1440 -1.3 -8.5 FIG00638940: hypothetical protein compare
GFF384 -1.3 -3.7 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF3943 -1.3 -1.1 Propanediol dehydratase small subunit (EC 4.2.1.28) compare
GFF1385 -1.3 -1.5 hypothetical protein compare
GFF115 -1.2 -3.5 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF2784 -1.2 -2.4 GTP-binding and nucleic acid-binding protein YchF compare
GFF2906 -1.2 -2.2 Protein yifE compare
GFF4353 -1.2 -2.5 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF925 -1.1 -1.8 hypothetical protein compare
GFF1356 -1.1 -2.3 Acetate operon repressor compare
GFF236 -1.1 -1.1 FIG00545237: hypothetical protein compare
GFF2392 -1.1 -1.9 Peptide deformylase (EC 3.5.1.88) compare
GFF4354 -1.1 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4652 -1.1 -2.8 Tol biopolymer transport system, TolR protein compare
GFF4615 -1.0 -1.5 FIG137478: Hypothetical protein YbgI compare
GFF3323 -1.0 -1.2 Putative curli production protein CsgC compare
GFF3618 -1.0 -4.5 Purine nucleotide synthesis repressor compare
GFF2148 -1.0 -3.1 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF3722 -1.0 -1.2 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF133 -1.0 -3.6 Type IV fimbrial assembly protein PilC compare
GFF1620 -1.0 -0.9 Copper resistance protein CopC compare
GFF4160 -0.9 -2.2 UPF0125 protein yfjF compare
GFF3324 -0.9 -0.9 putative periplasmic protein compare
GFF1219 -0.9 -2.3 FIG01048676: hypothetical protein compare
GFF4387 -0.9 -2.2 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF518 -0.9 -1.3 rRNA small subunit methyltransferase J compare
GFF2409 -0.9 -3.8 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF2907 -0.9 -4.1 HTH-type transcriptional regulator hdfR compare
GFF2698 -0.9 -5.3 Exoribonuclease II (EC 3.1.13.1) compare
GFF3772 -0.9 -1.2 1-phosphofructokinase (EC 2.7.1.56) compare
GFF3603 -0.9 -1.4 Secretion system apparatus protein SsaM compare
GFF218 -0.9 -2.0 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF2431 -0.9 -2.8 Chaperone protein HscA compare
GFF4655 -0.9 -2.0 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1768 -0.9 -1.0 hypothetical protein compare
GFF4455 -0.9 -4.1 Transcriptional regulator of fimbriae expression FimY compare
GFF4175 -0.9 -2.5 Uncharacterized protein YfiR precursor compare
GFF3044 -0.9 -1.9 hypothetical protein compare
GFF4537 -0.9 -1.8 CrcB protein compare
GFF255 -0.9 -1.9 hypothetical protein compare
GFF3364 -0.8 -2.1 Flagellar hook-associated protein FlgL compare
GFF3623 -0.8 -1.2 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF1503 -0.8 -3.6 Lipoprotein nlpI precursor compare
GFF4473 -0.8 -1.4 FIG01046818: hypothetical protein compare
GFF4126 -0.8 -0.7 FIG01047407: hypothetical protein compare
GFF3362 -0.8 -2.0 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF2921 -0.8 -3.0 FIG004454: RNA binding protein compare
GFF1408 -0.8 -2.5 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF792 -0.8 -0.8 hypothetical protein compare
GFF597 -0.8 -3.2 DNA-damage-inducible protein J compare
GFF4337 -0.8 -1.4 FIG001943: hypothetical protein YajQ compare
GFF2539 -0.8 -1.5 putative phage-related secreted protein compare
GFF3931 -0.8 -3.0 Propanediol utilization polyhedral body protein PduT compare
GFF3355 -0.8 -2.4 Flagellar basal-body rod protein FlgC compare
GFF645 -0.8 -0.9 Membrane protein associated with oxaloacetate decarboxylase compare
GFF4417 -0.8 -2.5 Methionine ABC transporter ATP-binding protein compare
GFF1035 -0.8 -4.3 Peptide chain release factor 3 compare
GFF1662 -0.8 -2.1 Chemotaxis response - phosphatase CheZ compare
GFF2119 -0.8 -1.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF1781 -0.8 -1.5 Putative binding-protein-dependent transport system compare
GFF190 -0.8 -2.7 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF3417 -0.8 -2.9 FIG002903: a protein of unknown function perhaps involved in purine metabolism compare
GFF249 -0.8 -1.0 L-lysine permease compare
GFF4865 -0.7 -3.3 Glycine cleavage system transcriptional activator GcvA compare
GFF3183 -0.7 -1.1 FIG01046167: hypothetical protein compare
GFF4653 -0.7 -1.4 TolA protein compare
GFF110 -0.7 -2.5 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF2493 -0.7 -1.8 FIG01047459: hypothetical protein compare
GFF3506 -0.7 -1.2 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF633 -0.7 -2.8 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF3558 -0.7 -1.4 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF1660 -0.7 -2.5 Flagellar biosynthesis protein FlhA compare
GFF4575 -0.7 -2.7 Magnesium and cobalt efflux protein CorC compare
GFF2248 -0.7 -2.5 FIG00642734: hypothetical protein compare
GFF32 -0.7 -0.8 Rho-specific inhibitor of transcription termination (YaeO) compare
GFF3229 -0.7 -1.4 Secreted effector protein compare
GFF121 -0.7 -1.9 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3621 -0.7 -2.3 Glutaredoxin-related protein compare
GFF3063 -0.7 -1.8 FIG002060: uncharacterized protein YggL compare
GFF2733 -0.7 -2.0 Membrane protein YciC, linked to IspA compare
GFF705 -0.7 -2.2 Glutamate transport membrane-spanning protein compare
GFF4232 -0.7 -1.5 Putative fimbrial chaperone compare
GFF55 -0.7 -3.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF1411 -0.7 -2.7 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF3502 -0.7 -0.7 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF2864 -0.7 -1.0 Mobile element protein compare
GFF122 -0.7 -3.7 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF973 -0.7 -1.5 FIG074102: hypothetical protein compare
GFF75 -0.7 -0.9 Major fimbrial subunit StfA compare
GFF1695 -0.7 -1.6 Cystine ABC transporter, ATP-binding protein compare
GFF3837 -0.7 -1.9 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
GFF2223 -0.6 -3.8 GTP-binding protein TypA/BipA compare
GFF4774 -0.6 -0.9 FIG074102: hypothetical protein compare
GFF2154 -0.6 -1.1 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF748 -0.6 -1.7 Protein ybjI compare
GFF2640 -0.6 -0.6 probable lipoprotein YPO2331 compare
GFF1497 -0.6 -1.1 Transcription termination protein NusA compare
GFF4911 -0.6 -1.6 Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2) compare
GFF188 -0.6 -3.6 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF4288 -0.6 -2.3 AroM protein compare
GFF881 -0.6 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
GFF4270 -0.6 -0.5 FIG00637869: hypothetical protein compare
GFF192 -0.6 -2.9 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF1259 -0.6 -2.2 Error-prone repair protein UmuD compare
GFF4731 -0.6 -1.8 Type III secretion injected virulence protein (YopP,YopJ, induces apoptosis, prevents cytokine induction, inhibits NFkb activation) compare
GFF707 -0.6 -2.0 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
GFF3166 -0.6 -1.6 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF2083 -0.6 -1.5 Ethanolamine utilization protein EutQ compare
GFF2305 -0.6 -1.4 Ferredoxin--NADP(+) reductase (EC 1.18.1.2) compare
GFF680 -0.6 -1.5 Molybdenum cofactor biosynthesis protein MoaC compare
GFF2163 -0.6 -2.2 FIG01047222: hypothetical protein compare
GFF3659 -0.6 -1.4 FIG01045244: hypothetical protein compare
GFF2601 -0.6 -2.8 Ribosomal-protein-L7p-serine acetyltransferase compare
GFF945 -0.6 -1.4 Aspartate N-acetyltransferase (EC 2.3.1.17) compare
GFF850 -0.6 -2.0 3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D) compare
GFF3706 -0.6 -0.8 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
GFF1270 -0.6 -1.3 DNA polymerase III theta subunit (EC 2.7.7.7) compare
GFF1672 -0.6 -1.5 Flagellar transcriptional activator FlhC compare
GFF1312 -0.6 -1.2 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF2635 -0.6 -0.7 Putative uncharacterized protein ydbL, may be related to amine metabolism compare
GFF3743 -0.6 -1.9 FIG01046717: hypothetical protein compare
GFF4519 -0.6 -1.2 Universal stress protein G compare
GFF3990 -0.6 -0.5 hypothetical protein compare
GFF4407 -0.6 -3.0 Putative stomatin/prohibitin-family membrane protease subunit YbbK compare
GFF3881 -0.6 -2.1 Colanic acid biosynthsis UDP-glucose lipid carrier transferase WcaJ compare
GFF2948 -0.6 -1.8 PTS system nitrogen-specific IIA component, PtsN compare
GFF2573 -0.6 -1.4 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF773 -0.6 -0.8 probable lipoprotein compare
GFF4386 -0.6 -1.8 FIG039061: hypothetical protein related to heme utilization compare
GFF2537 -0.6 -0.9 hypothetical protein compare
GFF4055 -0.6 -1.9 Uncharacterized protein ImpB compare
GFF1234 -0.6 -0.9 hypothetical protein compare
GFF2755 -0.6 -2.0 UPF0225 protein YchJ compare
GFF4465 -0.6 -1.0 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA compare
GFF2012 -0.6 -2.1 FxsA protein compare
GFF2630 -0.5 -2.4 Cytochrome b(561) compare
GFF3356 -0.5 -2.4 Flagellar basal-body rod modification protein FlgD compare
GFF1855 -0.5 -1.8 Uncharacterized protein YfaZ precursor compare
GFF2657 -0.5 -2.5 Universal stress protein E compare
GFF3007 -0.5 -3.2 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) compare
GFF1221 -0.5 -0.9 hypothetical protein compare
GFF775 -0.5 -2.9 putative excisionase compare
GFF1065 -0.5 -2.0 Conserved uncharacterized protein CreA compare
GFF2147 -0.5 -1.4 probable exported protein YPO3518 compare
GFF3830 -0.5 -0.5 Uncharacterized protein YehA precursor compare
GFF3258 -0.5 -2.0 LSU m5C1962 methyltransferase RlmI compare
GFF1194 -0.5 -2.5 DNA replication protein compare
GFF2719 -0.5 -2.0 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF3538 -0.5 -0.6 hypothetical protein compare
GFF3769 -0.5 -1.1 hypothetical protein compare
GFF2220 -0.5 -2.7 Nitrogen regulation protein NR(I) compare
GFF3484 -0.5 -1.1 FIG002003: Protein YdjA compare
GFF2068 -0.5 -2.0 FIG01045300: hypothetical protein compare
GFF975 -0.5 -1.4 FIG074102: hypothetical protein compare
GFF3071 -0.5 -1.1 hypothetical protein compare
GFF1033 -0.5 -2.0 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
GFF3358 -0.5 -2.7 Flagellar basal-body rod protein FlgF compare
GFF2615 -0.5 -1.7 LysR family transcriptional regulator YdcI compare
GFF2565 -0.5 -2.3 Methyl viologen resistance protein smvA compare
GFF3909 -0.5 -1.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
GFF1174 -0.5 -2.0 FIG00642834: hypothetical protein compare
GFF2039 -0.5 -2.1 Putative cytochrome oxidase compare
GFF2946 -0.5 -1.9 RNA polymerase sigma-54 factor RpoN compare
GFF4296 -0.5 -1.6 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
GFF2145 -0.5 -0.6 probable ribonuclease inhibitor YPO3690 compare
GFF1389 -0.5 -2.3 FIG074102: hypothetical protein compare
GFF1425 -0.5 -1.6 FIG004064: hypothetical protein compare
GFF3495 -0.5 -2.4 Succinylarginine dihydrolase (EC 3.5.3.23) compare
GFF540 -0.5 -2.7 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
GFF2313 -0.5 -3.1 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF4057 -0.5 -2.9 putative cytoplasmic protein compare
GFF3584 -0.5 -1.9 Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) compare
GFF4438 -0.5 -2.1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
GFF4007 -0.5 -1.9 Flagellar biosynthesis protein FliQ compare
GFF4611 -0.5 -0.9 FIG01200701: possible membrane protein compare
GFF371 -0.5 -2.7 DNA repair protein RadC compare
GFF374 -0.5 -1.9 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) compare
GFF4916 -0.5 -0.7 FIG00639119: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6D2_phage across organisms