Experiment set3IT076 for Agrobacterium fabrum C58

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu2791 -6.3 -9.6 3-isopropylmalate dehydrogenase compare
Atu0537 -5.7 -5.6 histidinol dehydrogenase compare
Atu0030 -5.7 -2.2 phosphocarrier protein HPr compare
Atu1845 -5.6 -5.9 phosphoribosylformylglycinamidine synthase I compare
Atu1687 -5.6 -13.5 anthranilate phosphoribosyltransferase compare
Atu2289 -5.5 -21.3 anthranilate synthase component I and II compare
Atu3740 -5.2 -13.0 fructose bisphosphate aldolase compare
Atu0035 -5.2 -11.9 phosphoenolpyruvate carboxykinase compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu1620 -5.1 -14.8 triosephosphate isomerase compare
Atu2264 -5.1 -16.9 2-isopropylmalate synthase compare
Atu4505 -5.0 -12.1 LacI family transcriptional regulator compare
Atu1750 -5.0 -4.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0099 -5.0 -11.8 prephenate dehydratase compare
Atu3469 -4.9 -3.4 phosphoglyceromutase compare
Atu2709 -4.9 -20.8 3-isopropylmalate dehydratase, large subunit compare
Atu0678 -4.8 -9.8 histidyl-tRNA synthetase compare
Atu3739 -4.8 -3.7 phosphoglycerate kinase compare
Atu0399 -4.6 -8.3 dihydroorotase compare
Atu2650 -4.6 -13.4 glycerol-3-phosphate dehydrogenase compare
Atu0679 -4.6 -8.7 ATP phosphoribosyltransferase compare
Atu2790 -4.5 -3.6 3-isopropylmalate dehydratase, small subunit compare
Atu2718 -4.5 -10.9 homoserine O-succinyltransferase compare
Atu2036 -4.4 -17.8 acetolactate synthase III, large subunit compare
Atu1205 -4.4 -15.8 threonine dehydratase compare
Atu1588 -4.4 -11.2 homoserine dehydrogenase compare
Atu0017 -4.4 -5.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -4.3 -8.0 indole-3-glycerol-phosphate synthase compare
Atu0432 -4.0 -9.4 O-succinylhomoserine sulfhydrylase compare
Atu3885 -4.0 -10.8 inositol monophosphatase compare
Atu1686 -3.9 -15.9 peptidyl-prolyl cis-trans isomerse D compare
Atu1141 -3.9 -6.8 Phosphoribosylglycinamide synthetase compare
Atu0400 -3.8 -5.2 orotate phosphoribosyltransferase compare
Atu3783 -3.8 -17.6 glutamate synthase subunit beta compare
Atu0043 -3.8 -4.4 imidazoleglycerol-phosphate dehydratase compare
Atu2015 -3.7 -15.5 aminotransferase compare
Atu0039 -3.7 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1850 -3.7 -5.3 phosphoribosylformylglycinamidine synthetase II compare
Atu3784 -3.6 -25.4 glutamate synthase large subunit compare
Atu2747 -3.6 -11.0 hypothetical protein compare
Atu0298 -3.6 -10.2 orotidine 5 compare
Atu3754 -3.5 -7.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1308 -3.5 -5.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0038 -3.5 -5.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1075 -3.5 -9.1 amidophosphoribosyltransferase compare
Atu1844 -3.5 -3.5 Phosphoribosylformylglycinamidine synthetase compare
Atu1307 -3.4 -9.2 dihydroorotase compare
Atu1685 -3.3 -1.8 hypothetical protein compare
Atu2115 -3.3 -11.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1589 -3.0 -8.3 aminotransferase, class I compare
Atu0332 -3.0 -13.8 RNA polymerase sigma-54 factor compare
Atu0647 -3.0 -8.9 phosphoribosylamine--glycine ligase compare
Atu0486 -3.0 -4.5 dihydroorotate dehydrogenase compare
Atu0040 -2.9 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1446 -2.7 -3.7 two component response regulator compare
Atu3755 -2.7 -5.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1140 -2.7 -4.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1445 -2.7 -5.8 two component sensor kinase compare
Atu1456 -2.6 -13.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1030 -2.4 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3706 -2.4 -7.0 D-3-phosphoglycerate dehydrogenase compare
Atu1759 -2.4 -10.4 L-serine dehydratase conserved
Atu0723 -2.2 -2.9 FAD dependent oxidoreductase compare
Atu1359 -2.2 -1.7 dnaK deletion suppressor protein compare
Atu2548 -2.2 -12.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3707 -2.1 -3.4 phosphoserine aminotransferase compare
Atu1457 -1.9 -2.5 hypothetical protein compare
Atu2067 -1.9 -1.4 hypothetical protein compare
Atu0769 -1.8 -2.4 protoheme IX farnesyltransferase compare
Atu0434 -1.7 -2.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1454 -1.7 -6.0 siroheme synthase compare
Atu0346 -1.7 -3.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu5045 -1.7 -1.3 hypothetical protein compare
Atu3298 -1.5 -10.1 C4-dicarboxylate transporter DctA compare
Atu4096 -1.5 -8.7 nicotinate-nucleotide pyrophosphorylase compare
Atu1577 -1.5 -6.0 ABC transporter, substrate binding protein (amino acid) conserved
Atu0641 -1.4 -3.7 hypothetical protein compare
Atu0029 -1.4 -5.3 S-adenosylhomocysteine hydrolase compare
Atu1580 -1.4 -8.2 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu8115 -1.4 -4.1 Hypothetical Protein compare
Atu1455 -1.4 -2.1 hypothetical protein compare
Atu1579 -1.4 -7.7 ABC transporter, membrane spanning protein (amino acid) conserved
Atu2155 -1.3 -10.0 methionine synthase compare
Atu0422 -1.3 -1.8 ABC transporter, membrane spanning protein compare
Atu2640 -1.2 -4.8 hypothetical protein compare
Atu1578 -1.2 -6.4 ABC transporter, membrane spanning protein (amino acid) compare
Atu5430 -1.2 -1.0 hypothetical protein compare
Atu6189 -1.2 -1.1 protein secretion chaperone compare
Atu3297 -1.2 -7.1 two component sensor kinase for C4-dicarboxylate transport compare
Atu3296 -1.2 -6.9 two component response regulator for C4-dicarboxylate transport compare
Atu3290 -1.2 -6.2 phosphomethylpyrimidine kinase compare
Atu2376 -1.2 -1.1 hypothetical protein compare
Atu0188 -1.2 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0291 -1.1 -5.7 hypothetical protein compare
Atu8159 -1.1 -2.6 hypothetical protein compare
Atu0677 -1.0 -1.8 hypothetical protein compare
Atu1372 -1.0 -3.5 hypothetical protein compare
Atu4098 -1.0 -5.9 quinolinate synthetase compare
Atu3763 -1.0 -1.8 hypothetical protein compare
Atu2684 -1.0 -1.2 hypothetical protein compare
Atu0025 -1.0 -1.2 hypothetical protein compare
Atu3289 -1.0 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu0189 -1.0 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu4540 -1.0 -2.9 protocatechuate 3,4-dioxygenase subunit beta compare
Atu1028 -1.0 -2.3 hypothetical protein compare
Atu8056 -1.0 -1.2 hypothetical protein compare
Atu0876 -1.0 -0.8 superoxide dismutase compare
Atu0842 -0.9 -1.8 hypothetical protein compare
Atu4217 -0.9 -2.0 TetR family transcriptional regulator compare
Atu0141 -0.9 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu0421 -0.9 -1.2 ABC transporter, membrane spanning protein compare
Atu1026 -0.9 -2.3 hypothetical protein compare
Atu3045 -0.9 -3.0 hypothetical protein compare
Atu0971 -0.9 -3.2 two component sensor kinase compare
Atu5088 -0.9 -1.4 hypothetical protein compare
Atu2800 -0.9 -2.3 precorrin-3B C17-methyltransferase compare
Atu1291 -0.9 -1.8 hypothetical protein compare
Atu0031 -0.9 -1.2 PTS system, IIA component compare
Atu3287 -0.9 -3.8 thiamine biosynthesis associated protein compare
Atu0190 -0.9 -3.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4166 -0.9 -1.8 UDP-glucose 4-epimerase compare
Atu6114 -0.9 -0.8 hypothetical protein compare
Atu0925 -0.9 -1.3 hypothetical protein compare
Atu4097 -0.8 -5.7 L-aspartate oxidase compare
Atu4317 -0.8 -2.7 TetR family transcriptional regulator compare
Atu2207 -0.8 -2.3 two component sensor kinase compare
Atu1774 -0.8 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu5427 -0.8 -1.3 hypothetical protein compare
Atu0895 -0.8 -1.9 ABC transporter, substrate binding protein compare
Atu2569 -0.8 -5.5 thiamine biosynthesis protein compare
Atu1439 -0.8 -2.0 hypothetical protein compare
Atu1748 -0.8 -4.0 NIFU-like protein compare
Atu4469 -0.8 -2.3 iron ABC transporter permease compare
Atu1679 -0.8 -1.6 peptidyl prolyl cis-trans isomerase compare
Atu3288 -0.8 -3.0 hydroxyethylthiazole kinase compare
Atu4040 -0.8 -2.6 hypothetical protein compare
Atu4407 -0.7 -1.8 periplasmic nitrate reductase, NapD protein compare
Atu5513 -0.7 -0.9 cold shock protein compare
Atu2183 -0.7 -4.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4615 -0.7 -4.5 glucose-1-phosphate thymidylyltransferase compare
Atu4613 -0.7 -4.8 glycosyltransferase compare
Atu0533 -0.7 -1.3 putative inhibitor of septum formation compare
Atu4773 -0.7 -1.4 two component response regulator compare
Atu2710 -0.7 -3.6 hypothetical protein compare
Atu2020 -0.7 -2.6 transcriptional regulator, TetR family compare
Atu1339 -0.7 -2.4 ribonuclease E compare
Atu1904 -0.7 -2.0 transcriptional regulator compare
Atu3794 -0.7 -3.9 FadR family transcriptional regulator compare
Atu5444 -0.7 -2.5 short-chain dehydrogenase compare
Atu2379 -0.7 -4.0 phosphomannomutase compare
Atu0977 -0.7 -2.4 serine protease DO-like protease compare
Atu1503 -0.7 -0.9 hypothetical protein compare
Atu1163 -0.7 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu5517 -0.7 -1.5 hypothetical protein compare
Atu2442 -0.7 -1.7 hypothetical protein compare
Atu6149 -0.7 -2.2 hypothetical protein compare
Atu2433 -0.7 -1.0 hypothetical protein compare
Atu4346 -0.7 -2.6 hypothetical protein compare
Atu2797 -0.7 -2.7 cobalamin biosynthesis protein compare
Atu4819 -0.6 -2.8 hypothetical protein compare
Atu5142 -0.6 -1.0 hypothetical protein compare
Atu2140 -0.6 -2.2 hypothetical protein compare
Atu3009 -0.6 -0.7 exopolysaccharide production protein compare
Atu3120 -0.6 -1.0 hypothetical protein compare
Atu0861 -0.6 -2.5 hypothetical protein compare
Atu4608 -0.6 -4.4 hypothetical protein compare
Atu3730 -0.6 -1.1 hypothetical protein compare
Atu4618 -0.6 -4.8 dTDP-rhamnose-3,5-epimerase compare
Atu0777 -0.6 -0.7 hypothetical protein compare
Atu5114 -0.6 -1.2 hypothetical protein compare
Atu2209 -0.6 -1.4 pyrroline-5-carboxylate reductase compare
Atu3311 -0.6 -4.5 phosphomannose isomerase compare
Atu2083 -0.6 -1.8 DNA repair protein RecN compare
Atu4677 -0.6 -0.8 hypothetical protein compare
Atu0331 -0.6 -1.6 sigma-54 modulation protein compare
Atu6040 -0.6 -2.2 conjugal transfer protein compare
Atu4133 -0.6 -1.7 hypothetical protein compare
Atu2796 -0.6 -3.0 precorrin-4 C11-methyltransferase compare
Atu1804 -0.6 -2.8 hypothetical protein compare
Atu3579 -0.6 -2.6 lactoylglutathione lyase compare
Atu0859 -0.6 -2.2 hypothetical protein compare
Atu8138 -0.6 -1.1 hypothetical protein compare
Atu5437 -0.6 -2.0 hypothetical protein compare
Atu3324 -0.6 -1.8 hypothetical protein compare
Atu3032 -0.6 -1.8 hypothetical protein compare
Atu1462 -0.6 -4.2 glycine cleavage system protein P2 compare
Atu2239 -0.6 -2.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1970 -0.6 -1.4 hypothetical protein compare
Atu0845 -0.6 -1.7 hypothetical protein compare
Atu4614 -0.5 -3.3 glycosyltransferase compare
Atu8145 -0.5 -1.3 hypothetical protein compare
Atu4477 -0.5 -3.1 TetR family transcriptional regulator compare
Atu0463 -0.5 -2.9 hypothetical protein compare
Atu6098 -0.5 -0.4 transcriptional regulator, HTH family compare
Atu0986 -0.5 -0.8 hypothetical protein compare
Atu3750 -0.5 -1.5 thiamine-phosphate pyrophosphorylase compare
Atu4609 -0.5 -4.3 glycosyltransferase compare
Atu0101 -0.5 -1.0 cytochrome c compare
Atu4616 -0.5 -0.8 dTDP-4-dehydrorhamnose reductase compare
Atu1023 -0.5 -1.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source L-Serine in Agrobacterium fabrum C58

For nitrogen source L-Serine across organisms