Experiment set3IT075 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 6C2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF2808 -3.9 -9.6 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
GFF4355 -3.4 -1.8 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF20 -3.1 -8.4 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase (EC 3.1.1.-) compare
GFF1830 -2.9 -11.9 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF2436 -2.9 -3.4 Iron-sulfur cluster regulator IscR compare
GFF2213 -2.9 -7.0 Periplasmic thiol:disulfide interchange protein DsbA compare
GFF1832 -2.6 -13.1 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF2047 -2.5 -9.1 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
GFF4653 -2.1 -3.6 TolA protein compare
GFF4353 -1.9 -3.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF4158 -1.8 -1.3 tmRNA-binding protein SmpB compare
GFF1863 -1.7 -1.7 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF115 -1.7 -4.6 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF1440 -1.6 -10.0 FIG00638940: hypothetical protein compare
GFF1312 -1.5 -2.9 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 compare
GFF2845 -1.5 -3.3 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF1411 -1.4 -4.8 Diacylglycerol kinase (EC 2.7.1.107) compare
GFF4652 -1.4 -3.1 Tol biopolymer transport system, TolR protein compare
GFF2690 -1.4 -1.7 Peptide transport system permease protein SapC compare
GFF2409 -1.4 -4.9 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF121 -1.4 -4.0 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2276 -1.3 -1.1 Manganese superoxide dismutase (EC 1.15.1.1) compare
GFF4354 -1.3 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF1634 -1.3 -2.0 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF4598 -1.3 -2.6 Uncharacterized protein ybfE compare
GFF1497 -1.3 -1.9 Transcription termination protein NusA compare
GFF3364 -1.2 -2.6 Flagellar hook-associated protein FlgL compare
GFF2392 -1.2 -2.1 Peptide deformylase (EC 3.5.1.88) compare
GFF4175 -1.2 -2.4 Uncharacterized protein YfiR precursor compare
GFF4145 -1.2 -1.7 hypothetical protein compare
GFF4774 -1.2 -1.5 FIG074102: hypothetical protein compare
GFF4654 -1.2 -4.4 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF110 -1.2 -3.0 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF55 -1.1 -6.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF1234 -1.1 -1.7 hypothetical protein compare
GFF188 -1.1 -4.9 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF3558 -1.1 -2.0 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF4020 -1.1 -3.0 Flagellar hook-basal body complex protein FliE compare
GFF4417 -1.1 -2.2 Methionine ABC transporter ATP-binding protein compare
GFF2148 -1.0 -2.5 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF824 -1.0 -2.3 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF2758 -1.0 -1.4 FIG01045187: hypothetical protein compare
GFF2583 -1.0 -1.0 FIG00638150: hypothetical protein compare
GFF3355 -1.0 -3.1 Flagellar basal-body rod protein FlgC compare
GFF4624 -1.0 -1.0 Putative glycosyl transferase compare
GFF2431 -0.9 -1.6 Chaperone protein HscA compare
GFF1472 -0.9 -1.9 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF3063 -0.9 -3.3 FIG002060: uncharacterized protein YggL compare
GFF1356 -0.9 -1.6 Acetate operon repressor compare
GFF2178 -0.9 -1.7 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
GFF4575 -0.9 -2.3 Magnesium and cobalt efflux protein CorC compare
GFF267 -0.9 -4.4 Transcriptional activator RfaH compare
GFF3621 -0.9 -2.5 Glutaredoxin-related protein compare
GFF2858 -0.9 -1.1 G-nucleotide exchange factor SopE compare
GFF2433 -0.9 -3.6 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF1219 -0.9 -3.1 FIG01048676: hypothetical protein compare
GFF1408 -0.9 -3.5 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
GFF4314 -0.9 -0.8 hypothetical protein compare
GFF2907 -0.9 -4.9 HTH-type transcriptional regulator hdfR compare
GFF4007 -0.9 -2.7 Flagellar biosynthesis protein FliQ compare
GFF3722 -0.9 -1.1 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF1672 -0.9 -3.1 Flagellar transcriptional activator FlhC compare
GFF603 -0.9 -2.7 NfuA Fe-S protein maturation compare
GFF3248 -0.8 -2.5 Outer membrane protein A precursor compare
GFF2946 -0.8 -2.9 RNA polymerase sigma-54 factor RpoN compare
GFF825 -0.8 -1.7 RNA-binding protein Hfq compare
GFF787 -0.8 -1.6 FIG00642546: hypothetical protein compare
GFF4017 -0.8 -5.2 Flagellar motor switch protein FliG compare
GFF1888 -0.8 -1.5 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
GFF540 -0.8 -4.4 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) compare
GFF4288 -0.8 -4.0 AroM protein compare
GFF848 -0.8 -1.7 Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69) compare
GFF2906 -0.8 -1.7 Protein yifE compare
GFF1035 -0.8 -5.3 Peptide chain release factor 3 compare
GFF2119 -0.8 -1.4 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF3362 -0.8 -1.7 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF3628 -0.8 -1.9 Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) compare
GFF4010 -0.8 -1.4 Flagellar motor switch protein FliN compare
GFF3212 -0.8 -0.9 FIG01046763: hypothetical protein compare
GFF1259 -0.8 -2.6 Error-prone repair protein UmuD compare
GFF2513 -0.8 -1.8 FIG00637950: hypothetical protein compare
GFF629 -0.8 -0.9 Shikimate kinase I (EC 2.7.1.71) compare
GFF122 -0.8 -4.2 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF2973 -0.8 -3.6 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF1660 -0.8 -1.9 Flagellar biosynthesis protein FlhA compare
GFF3229 -0.8 -1.5 Secreted effector protein compare
GFF2220 -0.8 -4.2 Nitrogen regulation protein NR(I) compare
GFF2063 -0.8 -1.0 Inner membrane protein YfeZ compare
GFF748 -0.7 -1.8 Protein ybjI compare
GFF3618 -0.7 -3.5 Purine nucleotide synthesis repressor compare
GFF192 -0.7 -4.2 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF3506 -0.7 -1.2 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF1503 -0.7 -3.4 Lipoprotein nlpI precursor compare
GFF2698 -0.7 -3.8 Exoribonuclease II (EC 3.1.13.1) compare
GFF4337 -0.7 -1.3 FIG001943: hypothetical protein YajQ compare
GFF261 -0.7 -1.2 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes compare
GFF1383 -0.7 -1.7 FIG00639790: hypothetical protein compare
GFF1076 -0.7 -2.2 Aerobic respiration control protein arcA compare
GFF657 -0.7 -3.5 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
GFF2430 -0.7 -1.1 Ferredoxin, 2Fe-2S compare
GFF2454 -0.7 -2.9 Nitrogen regulatory protein P-II compare
GFF4601 -0.7 -3.5 Phosphoglucomutase (EC 5.4.2.2) compare
GFF4387 -0.7 -1.6 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF2221 -0.7 -3.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF2208 -0.7 -2.2 DNA-damage-inducible protein I compare
GFF3439 -0.7 -1.3 hypothetical protein compare
GFF3329 -0.7 -4.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
GFF873 -0.7 -0.9 hypothetical protein compare
GFF3356 -0.7 -2.8 Flagellar basal-body rod modification protein FlgD compare
GFF1033 -0.7 -2.4 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
GFF2413 -0.7 -1.3 FIG021952: putative membrane protein compare
GFF3328 -0.7 -4.1 Glucans biosynthesis protein G precursor compare
GFF2833 -0.7 -1.5 PTS system, mannose-specific IID component (EC 2.7.1.69) compare
GFF2991 -0.7 -1.5 Tyrosine recombinase XerD compare
GFF4797 -0.7 -2.1 Putative cytochrome oxidase subunit compare
GFF3518 -0.7 -0.9 putative outer membrane protein compare
GFF3323 -0.7 -0.9 Putative curli production protein CsgC compare
GFF4234 -0.7 -1.1 Possible transmembrane regulator compare
GFF1502 -0.7 -4.0 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
GFF3358 -0.7 -2.4 Flagellar basal-body rod protein FlgF compare
GFF2358 -0.7 -1.9 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
GFF2500 -0.6 -1.5 C-terminal domain of CinA paralog, YdeJ compare
GFF4865 -0.6 -3.0 Glycine cleavage system transcriptional activator GcvA compare
GFF4473 -0.6 -1.1 FIG01046818: hypothetical protein compare
GFF1934 -0.6 -2.4 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF1194 -0.6 -3.5 DNA replication protein compare
GFF1679 -0.6 -1.0 predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) compare
GFF2954 -0.6 -3.3 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF2634 -0.6 -1.3 Gfa-like protein compare
GFF2948 -0.6 -1.7 PTS system nitrogen-specific IIA component, PtsN compare
GFF1559 -0.6 -1.5 hypothetical protein compare
GFF4869 -0.6 -3.1 FIG00761799: membrane protein compare
GFF3359 -0.6 -2.3 Flagellar basal-body rod protein FlgG compare
GFF3058 -0.6 -2.0 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
GFF517 -0.6 -3.6 Oligopeptidase A (EC 3.4.24.70) compare
GFF1353 -0.6 -1.1 hypothetical protein compare
GFF587 -0.6 -2.5 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF4192 -0.6 -3.6 DNA-binding protein HU-alpha compare
GFF1758 -0.6 -2.8 Putative LysR family transcriptional regulator compare
GFF2881 -0.6 -3.6 WzxE protein compare
GFF3009 -0.6 -2.7 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
GFF3015 -0.6 -1.5 Chromosome initiation inhibitor compare
GFF499 -0.6 -2.8 GGDEF/EAL domain protein YhjH compare
GFF4585 -0.6 -2.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
GFF3361 -0.6 -3.6 Flagellar P-ring protein FlgI compare
GFF597 -0.6 -1.3 DNA-damage-inducible protein J compare
GFF2639 -0.6 -1.1 Heat shock protein hslJ compare
GFF4161 -0.6 -3.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
GFF3154 -0.6 -1.1 Zinc transporter ZupT compare
GFF2043 -0.6 -3.0 Sulfate transporter, CysZ-type compare
GFF3007 -0.6 -3.5 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-) compare
GFF2031 -0.6 -0.8 FIG01046611: hypothetical protein compare
GFF2646 -0.6 -0.9 FIG01046477: hypothetical protein compare
GFF236 -0.6 -0.6 FIG00545237: hypothetical protein compare
GFF4060 -0.6 -0.5 putative cytoplasmic protein compare
GFF4465 -0.6 -1.1 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA compare
GFF2313 -0.6 -3.3 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF4790 -0.5 -1.6 FIG01047833: hypothetical protein compare
GFF772 -0.5 -2.4 Arginine ABC transporter, ATP-binding protein ArtP compare
GFF384 -0.5 -1.0 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF1914 -0.5 -0.9 Cell division inhibitor compare
GFF1343 -0.5 -0.6 Attachment invasion locus protein precursor compare
GFF4013 -0.5 -3.7 Flagellar hook-length control protein FliK compare
GFF2573 -0.5 -1.4 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF775 -0.5 -1.8 putative excisionase compare
GFF3874 -0.5 -1.7 Colanic acid biosynthesis acetyltransferase WcaF (EC 2.3.1.-) compare
GFF773 -0.5 -0.7 probable lipoprotein compare
GFF925 -0.5 -1.0 hypothetical protein compare
GFF1662 -0.5 -1.0 Chemotaxis response - phosphatase CheZ compare
GFF2466 -0.5 -0.6 Sialic acid utilization regulator, RpiR family compare
GFF975 -0.5 -1.8 FIG074102: hypothetical protein compare
GFF4806 -0.5 -1.0 FIG01045727: hypothetical protein compare
GFF1961 -0.5 -2.4 Phosphoglycerate transport system transcriptional regulatory protein PgtA compare
GFF4911 -0.5 -1.6 Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2) compare
GFF4322 -0.5 -2.4 Phosphatidylglycerophosphatase A (EC 3.1.3.27) compare
GFF1114 -0.5 -0.7 FIG01200701: possible membrane protein compare
GFF3484 -0.5 -1.1 FIG002003: Protein YdjA compare
GFF1174 -0.5 -1.9 FIG00642834: hypothetical protein compare
GFF1747 -0.5 -0.9 putative inner membrane protein compare
GFF4006 -0.5 -2.5 Flagellar biosynthesis protein FliR compare
GFF1221 -0.5 -0.8 hypothetical protein compare
GFF3753 -0.5 -2.2 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) compare
GFF2638 -0.5 -1.0 D-lactate dehydrogenase (EC 1.1.1.28) compare
GFF969 -0.5 -0.9 FIG007491: hypothetical protein YeeN compare
GFF1334 -0.5 -0.6 Uncharacterized protein YohL compare
GFF852 -0.5 -2.1 L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) (L-ascorbate utilization protein F) compare
GFF2518 -0.5 -2.2 Putative dehydrogenase protein compare
GFF1670 -0.5 -2.0 Flagellar motor rotation protein MotB compare
GFF356 -0.5 -1.1 'tRNA (guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34)' transl_table=11 compare
GFF4184 -0.5 -3.3 ClpB protein compare
GFF4861 -0.5 -1.0 L-fucose mutarotase compare
GFF1884 -0.5 -0.9 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF1661 -0.5 -3.3 Flagellar biosynthesis protein FlhB compare
GFF1072 -0.5 -2.5 Putative fimbrial chaperone protein compare
GFF4311 -0.5 -1.2 hypothetical protein compare
GFF2733 -0.5 -1.7 Membrane protein YciC, linked to IspA compare
GFF103 -0.5 -2.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
GFF2937 -0.5 -2.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
GFF2316 -0.5 -2.9 Transcriptional (co)regulator CytR compare
GFF1734 -0.5 -1.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 6C2_phage across organisms