Experiment set3IT074 for Variovorax sp. OAS795

Compare to:

R2A outgrowth control

200 most important genes:

  gene name fitness t score description  
ABID97_RS04765 -4.5 -3.1 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS05275 -4.4 -3.0 anthranilate phosphoribosyltransferase compare
ABID97_RS23425 -4.1 -3.9 tRNA-Pro compare
ABID97_RS05280 -4.0 -2.8 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS20425 -3.9 -4.3 DUF2818 family protein compare
ABID97_RS05750 -3.8 -3.7 glycosyltransferase compare
ABID97_RS05250 -3.8 -13.4 anthranilate synthase component I compare
ABID97_RS05765 -3.8 -2.6 UDP-glucose 4-epimerase GalE compare
ABID97_RS08425 -3.8 -7.1 tryptophan synthase subunit alpha compare
ABID97_RS01565 -3.7 -14.0 DNA starvation/stationary phase protection protein compare
ABID97_RS09180 -3.7 -8.2 DNA polymerase I compare
ABID97_RS05670 -3.7 -2.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS23320 -3.7 -12.8 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS23665 -3.6 -2.9 DNA-directed RNA polymerase subunit omega compare
ABID97_RS03800 -3.6 -2.5 O-antigen ligase family protein compare
ABID97_RS08435 -3.6 -2.4 phosphoribosylanthranilate isomerase compare
ABID97_RS05260 -3.4 -2.3 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS23450 -3.4 -8.2 MBOAT family protein compare
ABID97_RS23220 -3.3 -3.1 glutamate synthase subunit beta compare
ABID97_RS05365 -3.3 -6.7 DUF4390 domain-containing protein compare
ABID97_RS23325 -3.3 -11.3 cytochrome c biogenesis protein ResB compare
ABID97_RS12180 -3.3 -3.1 hypothetical protein compare
ABID97_RS05755 -3.2 -4.2 glycosyltransferase compare
ABID97_RS23455 -3.2 -5.2 hypothetical protein compare
ABID97_RS04500 -3.1 -2.1 HPr(Ser) kinase/phosphatase compare
ABID97_RS17850 -3.0 -1.3 tetratricopeptide repeat protein compare
ABID97_RS05370 -2.8 -9.0 ATP-binding protein compare
ABID97_RS03805 -2.8 -2.8 ATP-binding protein compare
ABID97_RS08480 -2.8 -3.2 citrate synthase compare
ABID97_RS06450 -2.8 -2.6 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS13860 -2.7 -10.3 hypothetical protein compare
ABID97_RS23225 -2.6 -18.1 glutamate synthase-related protein compare
ABID97_RS00255 -2.6 -16.0 type IV pilus twitching motility protein PilT compare
ABID97_RS06520 -2.5 -2.9 SAM-dependent methyltransferase compare
ABID97_RS21150 -2.5 -13.8 FAD-dependent oxidoreductase compare
ABID97_RS02060 -2.4 -14.3 TonB-dependent siderophore receptor compare
ABID97_RS06575 -2.4 -8.0 trehalose-phosphatase compare
ABID97_RS20020 -2.3 -4.4 LacI family DNA-binding transcriptional regulator compare
ABID97_RS07500 -2.2 -4.2 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS01650 -2.2 -2.5 orotidine-5'-phosphate decarboxylase compare
ABID97_RS06460 -2.2 -1.5 sigma 54-interacting transcriptional regulator compare
ABID97_RS03640 -2.1 -8.9 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS08430 -2.1 -3.2 tryptophan synthase subunit beta compare
ABID97_RS08570 -2.0 -9.0 ferrous iron transporter B compare
ABID97_RS02110 -2.0 -15.0 type IV pilus modification protein PilV compare
ABID97_RS08445 -2.0 -9.8 FimV/HubP family polar landmark protein compare
ABID97_RS23915 -2.0 -5.4 heme o synthase compare
ABID97_RS14160 -1.9 -8.4 cell division protein ZapE compare
ABID97_RS02120 -1.9 -12.4 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS23940 -1.9 -6.6 cytochrome c oxidase subunit 3 compare
ABID97_RS23440 -1.9 -11.4 A24 family peptidase compare
ABID97_RS03680 -1.8 -10.6 lysophospholipid transporter LplT compare
ABID97_RS15665 -1.8 -10.2 [protein-PII] uridylyltransferase compare
ABID97_RS04030 -1.8 -4.9 FAD-binding oxidoreductase compare
ABID97_RS02125 -1.8 -15.8 PilC/PilY family type IV pilus protein compare
ABID97_RS02115 -1.8 -8.7 PilW family protein compare
ABID97_RS13990 -1.8 -5.4 amino acid aminotransferase compare
ABID97_RS24705 -1.8 -9.8 response regulator compare
ABID97_RS07840 -1.7 -9.5 branched-chain amino acid ABC transporter permease compare
ABID97_RS16535 -1.7 -10.6 arginine/lysine/ornithine decarboxylase compare
ABID97_RS02135 -1.7 -9.5 GspH/FimT family pseudopilin compare
ABID97_RS23910 -1.7 -7.0 SCO family protein compare
ABID97_RS16690 -1.7 -6.9 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS25015 -1.7 -5.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS16985 -1.6 -4.0 transcriptional repressor LexA compare
ABID97_RS02140 -1.6 -10.1 sugar transferase compare
ABID97_RS24170 -1.6 -4.5 ATP-binding protein compare
ABID97_RS07845 -1.6 -11.3 ABC transporter ATP-binding protein compare
ABID97_RS19760 -1.6 -6.4 ROK family transcriptional regulator compare
ABID97_RS23435 -1.6 -13.1 type II secretion system F family protein compare
ABID97_RS15995 -1.6 -7.2 PilZ domain-containing protein compare
ABID97_RS07855 -1.6 -4.1 ABC transporter ATP-binding protein compare
ABID97_RS01840 -1.6 -11.7 DUF1631 family protein compare
ABID97_RS23430 -1.6 -10.2 type IV-A pilus assembly ATPase PilB compare
ABID97_RS01825 -1.6 -13.0 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS02455 -1.6 -5.5 nucleotidyltransferase family protein compare
ABID97_RS03915 -1.6 -7.3 DUF4124 domain-containing protein compare
ABID97_RS07850 -1.6 -8.5 ABC transporter ATP-binding protein compare
ABID97_RS04480 -1.5 -3.2 magnesium/cobalt transporter CorA compare
ABID97_RS00585 -1.5 -11.2 TlpA disulfide reductase family protein compare
ABID97_RS02145 -1.5 -10.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS14095 -1.5 -8.8 PAS domain S-box protein compare
ABID97_RS24370 -1.5 -3.2 DUF1841 family protein compare
ABID97_RS08775 -1.5 -2.7 ribosome small subunit-dependent GTPase A compare
ABID97_RS14115 -1.5 -6.1 dihydrolipoyl dehydrogenase compare
ABID97_RS17635 -1.5 -4.6 presqualene diphosphate synthase HpnD compare
ABID97_RS07775 -1.5 -4.4 phosphoribosylglycinamide formyltransferase compare
ABID97_RS08220 -1.4 -9.5 phosphoenolpyruvate carboxylase compare
ABID97_RS02130 -1.4 -9.2 type IV pilin protein compare
ABID97_RS06755 -1.4 -9.5 putative Na+/H+ antiporter compare
ABID97_RS23650 -1.4 -12.0 serine/threonine-protein kinase compare
ABID97_RS23380 -1.4 -10.0 lytic transglycosylase domain-containing protein compare
ABID97_RS16470 -1.4 -2.4 translational GTPase TypA compare
ABID97_RS06160 -1.4 -6.2 GTP-binding protein compare
ABID97_RS16565 -1.4 -8.7 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS06415 -1.4 -10.0 sigma-54 dependent transcriptional regulator compare
ABID97_RS23645 -1.4 -2.6 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS08710 -1.4 -7.2 polynucleotide adenylyltransferase PcnB compare
ABID97_RS03910 -1.4 -2.0 orotate phosphoribosyltransferase compare
ABID97_RS25100 -1.3 -7.1 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS06345 -1.3 -4.6 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS17590 -1.3 -10.2 endopeptidase La compare
ABID97_RS16785 -1.3 -2.7 transporter compare
ABID97_RS04035 -1.3 -6.4 NAD(P)/FAD-dependent oxidoreductase compare
ABID97_RS09935 -1.3 -7.6 hypothetical protein compare
ABID97_RS06175 -1.3 -11.1 STAS domain-containing protein compare
ABID97_RS23270 -1.3 -7.5 pilus assembly protein PilP compare
ABID97_RS25340 -1.3 -7.1 apolipoprotein N-acyltransferase compare
ABID97_RS19375 -1.2 -5.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS24920 -1.2 -1.7 Holliday junction branch migration protein RuvA compare
ABID97_RS06365 -1.2 -0.9 TlpA disulfide reductase family protein compare
ABID97_RS23275 -1.2 -8.7 type 4a pilus biogenesis protein PilO compare
ABID97_RS22705 -1.2 -7.3 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS14625 -1.2 -5.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS22625 -1.2 -8.3 HAMP domain-containing sensor histidine kinase compare
ABID97_RS05740 -1.2 -3.7 glycosyltransferase family A protein compare
ABID97_RS02200 -1.2 -10.9 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS23230 -1.2 -8.6 transposase compare
ABID97_RS10880 -1.2 -4.2 Mth938-like domain-containing protein compare
ABID97_RS16920 -1.2 -8.5 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS01755 -1.2 -6.5 pyruvate kinase compare
ABID97_RS25125 -1.2 -8.0 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS14975 -1.2 -3.7 hypothetical protein compare
ABID97_RS17270 -1.1 -7.5 ATP-binding protein compare
ABID97_RS09595 -1.1 -1.7 Arc family DNA-binding protein compare
ABID97_RS17970 -1.1 -4.5 protein TolQ compare
ABID97_RS07000 -1.1 -8.1 threonine ammonia-lyase, biosynthetic compare
ABID97_RS22620 -1.1 -7.3 response regulator transcription factor compare
ABID97_RS25405 -1.1 -7.8 16S ribosomal RNA compare
ABID97_RS23265 -1.1 -7.8 type IV pilus secretin PilQ compare
ABID97_RS23285 -1.1 -8.5 pilus assembly protein PilM compare
ABID97_RS02210 -1.1 -5.9 pilin compare
ABID97_RS02460 -1.1 -8.8 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS16695 -1.1 -8.4 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS14090 -1.1 -1.4 response regulator transcription factor compare
ABID97_RS23485 -1.1 -1.9 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS20095 -1.1 -2.6 DNA topoisomerase IV subunit B compare
ABID97_RS24045 -1.1 -2.8 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS10695 -1.1 -7.2 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS17265 -1.1 -2.8 two-component system response regulator OmpR compare
ABID97_RS23965 -1.1 -6.8 cytochrome c oxidase subunit II compare
ABID97_RS25525 -1.0 -3.9 LacI family DNA-binding transcriptional regulator compare
ABID97_RS24690 -1.0 -6.6 methyl-accepting chemotaxis protein compare
ABID97_RS23280 -1.0 -4.7 PilN domain-containing protein compare
ABID97_RS06275 -1.0 -1.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS16065 -1.0 -2.2 PDR/VanB family oxidoreductase compare
ABID97_RS15575 -1.0 -3.6 sulfate ABC transporter permease subunit CysT compare
ABID97_RS08440 -1.0 -4.7 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS08250 -1.0 -5.7 RluA family pseudouridine synthase compare
ABID97_RS07640 -1.0 -6.6 ubiquinol oxidase subunit II compare
ABID97_RS23330 -1.0 -4.5 c-type cytochrome compare
ABID97_RS05515 -1.0 -1.2 AEC family transporter compare
ABID97_RS21165 -1.0 -3.3 energy-dependent translational throttle protein EttA compare
ABID97_RS08360 -1.0 -4.1 DUF4845 domain-containing protein compare
ABID97_RS14200 -1.0 -3.1 pseudouridine synthase compare
ABID97_RS07065 -1.0 -7.0 glucose-6-phosphate dehydrogenase compare
ABID97_RS17595 -1.0 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS14665 -1.0 -2.8 UvrD-helicase domain-containing protein compare
ABID97_RS19010 -0.9 -1.4 hypothetical protein compare
ABID97_RS23950 -0.9 -6.1 cytochrome c oxidase assembly protein compare
ABID97_RS13950 -0.9 -5.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS01980 -0.9 -6.2 hypothetical protein compare
ABID97_RS00335 -0.9 -4.7 c-type cytochrome compare
ABID97_RS10705 -0.9 -3.8 H-NS histone family protein compare
ABID97_RS23970 -0.9 -7.4 DUF2244 domain-containing protein compare
ABID97_RS23920 -0.9 -4.7 COX15/CtaA family protein compare
ABID97_RS12415 -0.9 -7.8 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS14100 -0.9 -6.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS22825 -0.9 -2.7 ABC transporter ATP-binding protein compare
ABID97_RS16595 -0.9 -5.0 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS17200 -0.9 -7.5 ribonuclease R compare
ABID97_RS24390 -0.9 -5.0 c-type cytochrome compare
ABID97_RS17895 -0.9 -4.4 transcriptional regulator NrdR compare
ABID97_RS22030 -0.9 -3.9 DEAD/DEAH box helicase compare
ABID97_RS01595 -0.9 -4.0 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS25115 -0.9 -6.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABID97_RS10685 -0.9 -4.9 hypothetical protein compare
ABID97_RS03125 -0.9 -6.1 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS04960 -0.8 -1.0 ATP-binding protein compare
ABID97_RS06430 -0.8 -6.3 cytochrome c biogenesis protein CcsA compare
ABID97_RS13865 -0.8 -2.2 hypothetical protein compare
ABID97_RS08195 -0.8 -5.4 histidine kinase compare
ABID97_RS06315 -0.8 -6.6 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS16600 -0.8 -5.4 CysB family HTH-type transcriptional regulator compare
ABID97_RS12110 -0.8 -1.2 phosphoribosyltransferase family protein compare
ABID97_RS22885 -0.8 -1.8 ABC transporter permease compare
ABID97_RS10710 -0.8 -5.6 NADPH:quinone oxidoreductase family protein compare
ABID97_RS23290 -0.8 -5.9 penicillin-binding protein 1A compare
ABID97_RS27830 -0.8 -2.1 AMP-binding protein compare
ABID97_RS18820 -0.8 -1.6 PrpF domain-containing protein compare
ABID97_RS12850 -0.8 -3.1 ribulose bisphosphate carboxylase small subunit compare
ABID97_RS10295 -0.8 -1.6 winged helix-turn-helix transcriptional regulator compare
ABID97_RS07615 -0.8 -3.1 ATP-binding protein compare
ABID97_RS06180 -0.8 -4.1 ATP-dependent protease subunit HslV compare
ABID97_RS10690 -0.8 -4.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS08200 -0.8 -4.9 LytTR family DNA-binding domain-containing protein compare
ABID97_RS02275 -0.8 -5.0 recombinase RecA compare
ABID97_RS13195 -0.8 -1.3 maleylacetate reductase compare
ABID97_RS02420 -0.8 -4.3 protealysin inhibitor emfourin compare
ABID97_RS26670 -0.8 -2.3 DUF1801 domain-containing protein compare


Specific Phenotypes

For 1 genes in this experiment