Experiment set3IT074 for Agrobacterium fabrum C58

Compare to:

L-Threonine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0678 -6.2 -6.1 histidyl-tRNA synthetase compare
Atu0679 -6.0 -8.3 ATP phosphoribosyltransferase compare
Atu2289 -5.8 -17.6 anthranilate synthase component I and II compare
Atu3739 -5.6 -2.9 phosphoglycerate kinase compare
Atu0099 -5.5 -15.4 prephenate dehydratase compare
Atu0537 -5.4 -7.4 histidinol dehydrogenase compare
Atu1030 -5.4 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1687 -5.1 -9.8 anthranilate phosphoribosyltransferase compare
Atu1750 -4.9 -5.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu0017 -4.9 -4.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -4.8 -9.3 indole-3-glycerol-phosphate synthase compare
Atu1446 -4.7 -4.2 two component response regulator compare
Atu1307 -4.7 -9.3 dihydroorotase compare
Atu2791 -4.7 -11.5 3-isopropylmalate dehydrogenase compare
Atu1464 -4.6 -9.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu0043 -4.6 -4.4 imidazoleglycerol-phosphate dehydratase compare
Atu2709 -4.5 -20.9 3-isopropylmalate dehydratase, large subunit compare
Atu3885 -4.4 -13.2 inositol monophosphatase compare
Atu0038 -4.4 -5.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1620 -4.4 -16.0 triosephosphate isomerase compare
Atu1463 -4.4 -9.9 glycine cleavage system component H compare
Atu1462 -4.4 -14.9 glycine cleavage system protein P2 compare
Atu1308 -4.3 -8.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0041 -4.2 -3.6 glutamine amidotransferase compare
Atu2264 -4.2 -14.8 2-isopropylmalate synthase compare
Atu2650 -4.0 -13.1 glycerol-3-phosphate dehydrogenase compare
Atu0035 -4.0 -13.0 phosphoenolpyruvate carboxykinase compare
Atu0039 -4.0 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu2036 -3.9 -19.3 acetolactate synthase III, large subunit compare
Atu3740 -3.9 -11.9 fructose bisphosphate aldolase compare
Atu1850 -3.8 -5.3 phosphoribosylformylglycinamidine synthetase II compare
Atu2718 -3.8 -9.8 homoserine O-succinyltransferase compare
Atu4505 -3.7 -13.7 LacI family transcriptional regulator compare
Atu0432 -3.7 -11.0 O-succinylhomoserine sulfhydrylase compare
Atu0400 -3.5 -7.9 orotate phosphoribosyltransferase compare
Atu0486 -3.5 -7.2 dihydroorotate dehydrogenase compare
Atu0298 -3.5 -11.1 orotidine 5 compare
Atu1588 -3.4 -12.5 homoserine dehydrogenase compare
Atu3469 -3.4 -4.6 phosphoglyceromutase compare
Atu1589 -3.3 -9.4 aminotransferase, class I compare
Atu0346 -3.3 -4.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3785 -3.3 -14.4 threonine aldolase conserved
Atu3754 -3.2 -9.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1141 -3.2 -9.7 Phosphoribosylglycinamide synthetase compare
Atu2790 -3.1 -4.2 3-isopropylmalate dehydratase, small subunit compare
Atu1844 -3.1 -4.2 Phosphoribosylformylglycinamidine synthetase compare
Atu0029 -3.0 -8.1 S-adenosylhomocysteine hydrolase compare
Atu0399 -3.0 -9.6 dihydroorotase compare
Atu3730 -3.0 -2.8 hypothetical protein compare
Atu0647 -2.9 -7.4 phosphoribosylamine--glycine ligase compare
Atu0030 -2.9 -2.5 phosphocarrier protein HPr compare
Atu3731 -2.8 -12.1 5-formyltetrahydrofolate cyclo-ligase compare
Atu0332 -2.8 -12.1 RNA polymerase sigma-54 factor compare
Atu1445 -2.8 -8.1 two component sensor kinase compare
Atu1140 -2.8 -8.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1075 -2.7 -8.3 amidophosphoribosyltransferase compare
Atu3755 -2.7 -5.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2155 -2.7 -19.2 methionine synthase compare
Atu1359 -2.5 -1.9 dnaK deletion suppressor protein compare
Atu1686 -2.3 -15.0 peptidyl-prolyl cis-trans isomerse D compare
Atu2115 -2.3 -9.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1845 -2.3 -3.7 phosphoribosylformylglycinamidine synthase I compare
Atu2015 -2.3 -11.7 aminotransferase compare
Atu3783 -2.1 -14.6 glutamate synthase subunit beta compare
Atu0040 -2.0 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3482 -2.0 -7.2 pantoate--beta-alanine ligase compare
Atu2800 -1.9 -3.4 precorrin-3B C17-methyltransferase compare
Atu3784 -1.8 -13.5 glutamate synthase large subunit compare
Atu1456 -1.7 -10.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0876 -1.7 -2.3 superoxide dismutase compare
Atu1455 -1.7 -3.7 hypothetical protein compare
Atu1810 -1.7 -2.1 hypothetical protein compare
Atu2807 -1.7 -6.7 cob(I)alamin adenosyltransferase compare
Atu2796 -1.7 -8.0 precorrin-4 C11-methyltransferase compare
Atu2184 -1.6 -5.2 transcriptional regulator, AsnC family compare
Atu2809 -1.6 -8.2 cobalamin biosynthesis protein compare
Atu1454 -1.6 -8.3 siroheme synthase compare
Atu1457 -1.5 -2.0 hypothetical protein compare
Atu2416 -1.5 -11.1 glutamine synthetase compare
Atu2801 -1.5 -4.3 precorrin-2 C20 methyltransferase compare
Atu4711 -1.5 -4.7 two component sensor kinase compare
Atu2804 -1.5 -9.2 cobaltochelatase subunit compare
Atu2808 -1.5 -6.8 cobyric acid synthase compare
Atu2795 -1.4 -7.0 cobalamin biosynthetic protein compare
Atu2799 -1.4 -3.6 precorrin-6x reductase compare
Atu2569 -1.4 -10.2 thiamine biosynthesis protein compare
Atu2548 -1.4 -9.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1759 -1.4 -9.0 L-serine dehydratase compare
Atu3290 -1.4 -8.1 phosphomethylpyrimidine kinase compare
Atu1542 -1.4 -5.6 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1354 -1.3 -1.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0723 -1.3 -1.7 FAD dependent oxidoreductase compare
Atu2802 -1.3 -7.1 precorrin-8X methylmutase compare
Atu2805 -1.3 -4.8 cobalamin synthesis protein compare
Atu2803 -1.3 -4.3 Cobalamin biosynthesis associated protein compare
Atu2131 -1.3 -5.5 hypothetical protein compare
Atu2793 -1.3 -3.9 cobyrinic acid a,c-diamide synthase compare
Atu2798 -1.2 -5.2 precorrin-6y methyltransferase compare
Atu2376 -1.2 -1.2 hypothetical protein compare
Atu4897 -1.2 -1.4 hypothetical protein compare
Atu4166 -1.2 -2.9 UDP-glucose 4-epimerase compare
Atu0641 -1.2 -3.7 hypothetical protein compare
Atu3483 -1.2 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0361 -1.2 -3.2 transcriptional regulator compare
Atu3289 -1.2 -3.1 thiamine-phosphate pyrophosphorylase compare
Atu1764 -1.1 -8.0 methylenetetrahydrofolate reductase compare
Atu4613 -1.1 -8.8 glycosyltransferase compare
Atu3707 -1.1 -1.9 phosphoserine aminotransferase compare
Atu3288 -1.1 -4.8 hydroxyethylthiazole kinase compare
Atu1580 -1.1 -7.2 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu0086 -1.1 -1.4 ribosome-binding factor A compare
Atu1891 -1.1 -3.8 cobalamin biosynthesis protein compare
Atu5160 -1.1 -2.6 transcriptional regulator protein compare
Atu2747 -1.1 -8.1 hypothetical protein compare
Atu4615 -1.1 -6.1 glucose-1-phosphate thymidylyltransferase compare
Atu4173 -1.0 -2.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu1579 -1.0 -6.7 ABC transporter, membrane spanning protein (amino acid) compare
Atu3008 -1.0 -1.0 hypothetical protein compare
Atu4773 -1.0 -1.6 two component response regulator compare
Atu3468 -1.0 -1.0 hypothetical protein compare
Atu0845 -0.9 -3.1 hypothetical protein compare
Atu2640 -0.9 -3.3 hypothetical protein compare
Atu1578 -0.9 -4.7 ABC transporter, membrane spanning protein (amino acid) compare
Atu3732 -0.9 -4.4 hemolysin compare
Atu3296 -0.9 -5.2 two component response regulator for C4-dicarboxylate transport compare
Atu2758 -0.9 -6.6 ammonium transporter conserved
Atu3298 -0.9 -6.2 C4-dicarboxylate transporter DctA compare
Atu0189 -0.9 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu6165 -0.9 -0.7 hypothetical protein compare
Atu5034 -0.9 -1.5 hypothetical protein compare
Atu4617 -0.9 -5.1 dTDP-D-glucose-4,6-dehydratase compare
Atu2207 -0.9 -2.0 two component sensor kinase compare
Atu0291 -0.8 -5.5 hypothetical protein compare
Atu2183 -0.8 -5.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2335 -0.8 -1.6 hypothetical protein compare
Atu1572 -0.8 -4.5 hydrolase compare
Atu4618 -0.8 -5.7 dTDP-rhamnose-3,5-epimerase compare
Atu1577 -0.8 -4.1 ABC transporter, substrate binding protein (amino acid) compare
Atu0817 -0.8 -5.6 sulfate adenylate transferase, subunit 2 compare
Atu0659 -0.8 -3.6 NTP pyrophosphohydrolase, MutT family compare
Atu8115 -0.8 -3.2 Hypothetical Protein compare
Atu3121 -0.8 -1.3 cold shock protein compare
Atu1774 -0.8 -4.8 ABC transporter, substrate binding protein (peptide) compare
Atu4609 -0.8 -5.5 glycosyltransferase compare
Atu5142 -0.8 -0.8 hypothetical protein compare
Atu3297 -0.8 -5.2 two component sensor kinase for C4-dicarboxylate transport compare
Atu3353 -0.8 -5.3 mannose-1-phosphate guanylyltransferase compare
Atu0769 -0.8 -1.3 protoheme IX farnesyltransferase compare
Atu5010 -0.8 -1.7 hypothetical protein compare
Atu8203 -0.8 -2.1 hypothetical protein compare
Atu4317 -0.8 -3.1 TetR family transcriptional regulator compare
Atu1028 -0.8 -2.3 hypothetical protein compare
Atu0025 -0.7 -1.7 hypothetical protein compare
Atu1217 -0.7 -3.0 cysteine synthase compare
Atu2620 -0.7 -1.1 hypothetical protein compare
Atu0803 -0.7 -6.4 pyruvate,orthophosphate dikinase compare
Atu1163 -0.7 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8052 -0.7 -1.0 hypothetical protein compare
Atu3908 -0.7 -5.2 GntR family transcriptional regulator compare
Atu4614 -0.7 -3.9 glycosyltransferase compare
Atu2757 -0.7 -4.1 nitrogen regulatory protein PII compare
Atu1546 -0.7 -3.2 transcriptional regulator, MerR family compare
Atu5088 -0.7 -1.5 hypothetical protein compare
Atu3912 -0.7 -4.6 hypothetical protein compare
Atu2083 -0.7 -1.9 DNA repair protein RecN compare
Atu2267 -0.7 -4.3 hypothetical protein compare
Atu2035 -0.7 -4.4 acetolactate synthase, small subunit compare
Atu0565 -0.7 -2.5 hypothetical protein compare
Atu0818 -0.7 -4.6 phosphoadenosine phosphosulfate reductase compare
Atu0846 -0.7 -2.3 transcriptional regulator, MarR family compare
Atu0190 -0.7 -3.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0079 -0.7 -3.3 Atu0079-1 mutant of pfkB family carbohydrate kinase compare
Atu3287 -0.7 -3.0 thiamine biosynthesis associated protein compare
Atu4608 -0.6 -4.8 hypothetical protein compare
Atu0536 -0.6 -2.4 hypothetical protein compare
Atu8046 -0.6 -1.2 hypothetical protein compare
Atu1435 -0.6 -2.5 hypothetical protein compare
Atu1339 -0.6 -2.1 ribonuclease E compare
Atu3311 -0.6 -5.1 phosphomannose isomerase compare
Atu0816 -0.6 -4.5 sulfate adenylate transferase, subunit 1 compare
Atu2554 -0.6 -1.4 lysyl-tRNA synthetase compare
Atu3579 -0.6 -2.0 lactoylglutathione lyase compare
Atu0357 -0.6 -3.3 phosphate starvation inducible protein compare
Atu3759 -0.6 -1.2 hypothetical protein compare
Atu2797 -0.6 -2.8 cobalamin biosynthesis protein compare
Atu0977 -0.6 -2.2 serine protease DO-like protease compare
Atu8162 -0.6 -1.0 hypothetical protein compare
Atu3075 -0.6 -3.0 TetR family transcriptional regulator compare
Atu4099 -0.6 -3.1 hypothetical protein compare
Atu4860 -0.6 -3.9 hypothetical protein compare
Atu5448 -0.6 -1.4 hypothetical protein compare
Atu2710 -0.6 -2.9 hypothetical protein compare
Atu0638 -0.6 -1.4 hypothetical protein compare
Atu5501 -0.6 -0.8 hypothetical protein compare
Atu5054 -0.6 -1.6 hypothetical protein compare
Atu4232 -0.6 -2.8 GntR family transcriptional regulator compare
Atu1803 -0.6 -3.1 cold shock protein compare
Atu1679 -0.6 -1.5 peptidyl prolyl cis-trans isomerase compare
Atu0434 -0.6 -1.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2787 -0.5 -0.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source L-Threonine in Agrobacterium fabrum C58

For nitrogen source L-Threonine across organisms