Experiment set3IT071 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with 8C2_phage 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF3830 -2.0 -1.0 Uncharacterized protein YehA precursor compare
GFF1830 -1.9 -7.7 Two-component sensor protein RcsD (EC 2.7.3.-) compare
GFF2690 -1.8 -2.1 Peptide transport system permease protein SapC compare
GFF2689 -1.7 -3.2 Peptide transport system permease protein SapB compare
GFF1832 -1.7 -7.9 Two-component sensor protein RcsC (EC 2.7.3.-) compare
GFF1221 -1.6 -1.8 hypothetical protein compare
GFF2889 -1.6 -8.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
GFF2031 -1.6 -1.6 FIG01046611: hypothetical protein compare
GFF1334 -1.6 -1.2 Uncharacterized protein YohL compare
GFF4774 -1.4 -1.4 FIG074102: hypothetical protein compare
GFF2733 -1.3 -2.5 Membrane protein YciC, linked to IspA compare
GFF2973 -1.3 -4.3 Putative cytochrome d ubiquinol oxidase subunit III (EC 1.10.3.-) (Cytochrome bd-I oxidase subunit III) compare
GFF3324 -1.3 -1.0 putative periplasmic protein compare
GFF825 -1.3 -2.1 RNA-binding protein Hfq compare
GFF1559 -1.3 -2.1 hypothetical protein compare
GFF3558 -1.2 -1.8 Iron binding protein SufA for iron-sulfur cluster assembly compare
GFF3603 -1.2 -2.0 Secretion system apparatus protein SsaM compare
GFF3450 -1.2 -4.6 Transcriptional regulator, MerR family compare
GFF4619 -1.2 -1.6 hypothetical protein compare
GFF2313 -1.2 -5.8 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF2539 -1.2 -1.7 putative phage-related secreted protein compare
GFF2517 -1.2 -0.9 [NiFe] hydrogenase nickel incorporation HybF-like protein compare
GFF4350 -1.2 -0.7 hypothetical protein compare
GFF4256 -1.2 -1.0 putative Cytochrome bd2, subunit II compare
GFF2537 -1.2 -1.4 hypothetical protein compare
GFF4158 -1.2 -0.9 tmRNA-binding protein SmpB compare
GFF827 -1.2 -5.0 HflK protein compare
GFF2178 -1.2 -1.6 Thiol peroxidase, Bcp-type (EC 1.11.1.15) compare
GFF1088 -1.2 -0.8 FIG01045785: hypothetical protein compare
GFF3913 -1.1 -3.3 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
GFF559 -1.1 -1.5 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF3151 -1.1 -5.3 Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1 compare
GFF761 -1.1 -0.9 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
GFF3706 -1.1 -1.5 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
GFF3515 -1.1 -1.2 FIG00637864: hypothetical protein compare
GFF2098 -1.1 -2.5 Thioredoxin 2 (EC 1.8.1.8) compare
GFF4008 -1.1 -1.6 Flagellar biosynthesis protein FliP compare
GFF1747 -1.1 -0.8 putative inner membrane protein compare
GFF1884 -1.1 -1.1 NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) compare
GFF2907 -1.0 -4.5 HTH-type transcriptional regulator hdfR compare
GFF2878 -1.0 -5.6 Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-) compare
GFF2688 -1.0 -2.4 Peptide transport periplasmic protein SapA compare
GFF188 -1.0 -3.3 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF2154 -1.0 -1.4 L(+)-tartrate dehydratase beta subunit (EC 4.2.1.32) compare
GFF3467 -1.0 -2.3 Putative inner membrane protein compare
GFF4016 -1.0 -1.3 Flagellar assembly protein FliH compare
GFF4473 -1.0 -1.2 FIG01046818: hypothetical protein compare
GFF3364 -1.0 -1.2 Flagellar hook-associated protein FlgL compare
GFF2887 -0.9 -4.3 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
GFF3743 -0.9 -1.7 FIG01046717: hypothetical protein compare
GFF2409 -0.9 -2.5 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
GFF4653 -0.9 -1.9 TolA protein compare
GFF3071 -0.9 -1.7 hypothetical protein compare
GFF1219 -0.9 -1.1 FIG01048676: hypothetical protein compare
GFF573 -0.9 -0.9 FIG01046423: hypothetical protein compare
GFF249 -0.9 -1.0 L-lysine permease compare
GFF3395 -0.9 -0.8 Putative outer membrane protein compare
GFF1109 -0.9 -1.4 Putative LysR family transcriptional regulator compare
GFF517 -0.9 -5.1 Oligopeptidase A (EC 3.4.24.70) compare
GFF2660 -0.9 -3.6 Putative transcriptional regulator compare
GFF4652 -0.9 -1.6 Tol biopolymer transport system, TolR protein compare
GFF1914 -0.9 -1.2 Cell division inhibitor compare
GFF1005 -0.8 -1.6 FIG00638610: hypothetical protein compare
GFF3632 -0.8 -1.9 Transcriptional regulator SlyA compare
GFF3594 -0.8 -1.3 Type III secretion effector SseF compare
GFF925 -0.8 -1.2 hypothetical protein compare
GFF3150 -0.8 -3.1 UPF0441 protein ygiB compare
GFF1584 -0.8 -1.5 Ribonucleotide reduction protein NrdI compare
GFF4454 -0.8 -0.8 Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family) compare
GFF2748 -0.8 -1.3 Putative membrane protein compare
GFF4007 -0.8 -3.0 Flagellar biosynthesis protein FliQ compare
GFF4125 -0.8 -1.0 Mobile element protein compare
GFF2222 -0.8 -3.2 Glutamine synthetase type I (EC 6.3.1.2) compare
GFF2948 -0.8 -1.7 PTS system nitrogen-specific IIA component, PtsN compare
GFF3229 -0.8 -1.4 Secreted effector protein compare
GFF236 -0.8 -0.7 FIG00545237: hypothetical protein compare
GFF3506 -0.8 -1.1 6-phospho-beta-glucosidase (EC 3.2.1.86) compare
GFF4639 -0.8 -1.5 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) compare
GFF2664 -0.8 -1.2 FIG01200701: possible membrane protein compare
GFF4058 -0.8 -1.6 Putative cytoplasmic protein USSDB7A compare
GFF826 -0.8 -1.7 GTP-binding protein HflX compare
GFF1981 -0.8 -0.8 FIG00638165: hypothetical protein compare
GFF2994 -0.8 -1.0 YgfY COG2938 compare
GFF3439 -0.8 -1.9 hypothetical protein compare
GFF4337 -0.8 -1.2 FIG001943: hypothetical protein YajQ compare
GFF1038 -0.8 -2.6 FIG01200701: possible membrane protein compare
GFF2119 -0.8 -1.2 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF1908 -0.8 -0.8 FIG01046667: hypothetical protein compare
GFF3362 -0.8 -2.1 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
GFF4004 -0.8 -1.5 DsrB protein compare
GFF1348 -0.8 -1.0 FIG01046723: hypothetical protein compare
GFF360 -0.8 -0.9 hypothetical protein compare
GFF4561 -0.8 -1.9 FIG002095: hypothetical protein compare
GFF2739 -0.8 -3.4 Cardiolipin synthetase (EC 2.7.8.-) compare
GFF2413 -0.8 -1.6 FIG021952: putative membrane protein compare
GFF3528 -0.8 -1.0 Integration host factor alpha subunit compare
GFF3296 -0.7 -1.1 Flavoprotein WrbA compare
GFF3969 -0.7 -3.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF2415 -0.7 -1.4 Nucleoside diphosphate kinase (EC 2.7.4.6) compare
GFF4575 -0.7 -1.6 Magnesium and cobalt efflux protein CorC compare
GFF1946 -0.7 -1.1 FIG00639460: hypothetical protein compare
GFF2967 -0.7 -0.8 ClpXP protease specificity-enhancing factor / Stringent starvation protein B compare
GFF4598 -0.7 -1.1 Uncharacterized protein ybfE compare
GFF4314 -0.7 -0.6 hypothetical protein compare
GFF969 -0.7 -1.1 FIG007491: hypothetical protein YeeN compare
GFF453 -0.7 -1.9 FIG00923183: possible membrane protein YebY compare
GFF3723 -0.7 -0.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
GFF2555 -0.7 -1.8 Stationary-phase-induced ribosome-associated protein compare
GFF1394 -0.7 -1.8 putative cytoplasmic protein compare
GFF4722 -0.7 -1.1 [NiFe] hydrogenase metallocenter assembly protein HypC compare
GFF1434 -0.7 -1.3 FIG00732228: membrane protein compare
GFF4353 -0.7 -1.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF907 -0.7 -1.5 FIG01045571: hypothetical protein compare
GFF3154 -0.7 -1.6 Zinc transporter ZupT compare
GFF4537 -0.7 -1.2 CrcB protein compare
GFF1872 -0.7 -2.1 ElaB protein compare
GFF4788 -0.7 -3.4 RNA polymerase sigma factor RpoS compare
GFF740 -0.7 -1.4 Putative LysR family transcriptional regulator compare
GFF4850 -0.7 -2.2 Decarboxylase family protein compare
GFF2200 -0.7 -1.6 Phage CI-like repressor compare
GFF863 -0.7 -2.3 Putative membrane protein compare
GFF3127 -0.7 -1.8 FIG01046325: hypothetical protein compare
GFF4720 -0.7 -1.3 [NiFe] hydrogenase nickel incorporation protein HypA compare
GFF218 -0.7 -1.6 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF3601 -0.7 -2.4 Type III secretion protein SsaK compare
GFF4522 -0.7 -0.9 Regulator of nucleoside diphosphate kinase compare
GFF368 -0.7 -2.2 Transcriptional regulator SlmA, TetR family compare
GFF2686 -0.7 -1.5 Phage shock protein A compare
GFF794 -0.7 -1.0 Phage holin compare
GFF1571 -0.7 -0.5 FIG00638334: hypothetical protein compare
GFF4011 -0.7 -3.3 Flagellar motor switch protein FliM compare
GFF2655 -0.7 -1.1 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
GFF3195 -0.7 -1.0 Uncharacterized membrane protein YqjD compare
GFF1679 -0.7 -0.9 predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) compare
GFF3044 -0.7 -2.6 hypothetical protein compare
GFF2684 -0.7 -1.4 Phage shock protein C compare
GFF2527 -0.7 -1.0 Choloylglycine hydrolase (EC 3.5.1.24) compare
GFF3355 -0.6 -2.1 Flagellar basal-body rod protein FlgC compare
GFF1779 -0.6 -1.8 Putative ABC transporter membrane protein compare
GFF3433 -0.6 -1.0 FIG074102: hypothetical protein compare
GFF1669 -0.6 -2.4 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
GFF3940 -0.6 -0.5 Propanediol utilization polyhedral body protein PduJ compare
GFF551 -0.6 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF352 -0.6 -0.8 FIG01048298: hypothetical protein compare
GFF707 -0.6 -1.7 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
GFF2514 -0.6 -2.1 FIG00638206: hypothetical protein compare
GFF2756 -0.6 -1.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF4387 -0.6 -1.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF4861 -0.6 -1.0 L-fucose mutarotase compare
GFF881 -0.6 -2.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
GFF992 -0.6 -1.4 hypothetical protein compare
GFF3464 -0.6 -1.1 FIG00638254: hypothetical protein compare
GFF3787 -0.6 -0.9 Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator compare
GFF133 -0.6 -2.1 Type IV fimbrial assembly protein PilC compare
GFF651 -0.6 -2.4 Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) compare
GFF1435 -0.6 -0.8 Agglutination protein compare
GFF3183 -0.6 -0.8 FIG01046167: hypothetical protein compare
GFF3280 -0.6 -2.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15) compare
GFF1119 -0.6 -2.2 Na+/H+ antiporter NhaA type compare
GFF2148 -0.6 -1.3 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF4806 -0.6 -0.8 FIG01045727: hypothetical protein compare
GFF2092 -0.6 -1.6 FIG074102: hypothetical protein compare
GFF2513 -0.6 -0.7 FIG00637950: hypothetical protein compare
GFF2008 -0.6 -1.2 probable membrane protein yjeI compare
GFF4042 -0.6 -2.8 SAM-dependent methyltransferase YafE (UbiE paralog) compare
GFF34 -0.6 -1.2 FIG01280259: hypothetical protein compare
GFF4312 -0.6 -1.7 hypothetical protein compare
GFF2758 -0.6 -0.7 FIG01045187: hypothetical protein compare
GFF539 -0.6 -1.1 Putative inner membrane protein compare
GFF2852 -0.6 -1.7 FIG00638105: hypothetical protein compare
GFF2269 -0.6 -0.9 hypothetical protein compare
GFF3591 -0.6 -1.6 Secretion system effector SseD compare
GFF2946 -0.6 -1.8 RNA polymerase sigma-54 factor RpoN compare
GFF4865 -0.6 -2.6 Glycine cleavage system transcriptional activator GcvA compare
GFF4707 -0.6 -1.6 Fe-S-cluster-containing hydrogenase components 2 compare
GFF1613 -0.6 -1.6 lytic enzyme compare
GFF1480 -0.6 -2.8 Fumarate respiration transcriptional regulator DcuR compare
GFF3786 -0.6 -1.9 FIG00924762: possible membrane protein compare
GFF4790 -0.6 -2.0 FIG01047833: hypothetical protein compare
GFF1947 -0.6 -1.1 Putative transporting ATPase compare
GFF3570 -0.6 -0.5 FIG074102: hypothetical protein compare
GFF3814 -0.6 -1.7 Osmoprotectant ABC transporter binding protein YehZ compare
GFF2256 -0.6 -1.7 FIG00638858: hypothetical protein compare
GFF4357 -0.6 -2.8 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
GFF3633 -0.6 -1.9 Outer membrane lipoprotein pcp precursor compare
GFF1610 -0.6 -0.7 hypothetical protein compare
GFF2601 -0.6 -3.4 Ribosomal-protein-L7p-serine acetyltransferase compare
GFF828 -0.6 -1.7 HflC protein compare
GFF2392 -0.6 -0.9 Peptide deformylase (EC 3.5.1.88) compare
GFF2553 -0.6 -0.5 Osmotically inducible protein C compare
GFF3274 -0.6 -1.8 5-Hydroxyisourate Hydrolase (HIUase) (EC 3.5.2.17) compare
GFF2145 -0.6 -0.5 probable ribonuclease inhibitor YPO3690 compare
GFF456 -0.6 -2.3 hypothetical protein compare
GFF400 -0.6 -0.8 Glutaredoxin 3 (Grx3) compare
GFF1416 -0.6 -2.4 Zinc uptake regulation protein ZUR compare
GFF3058 -0.5 -1.6 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
GFF190 -0.5 -1.3 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF1303 -0.5 -0.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF4483 -0.5 -1.3 FIG074102: hypothetical protein compare
GFF407 -0.5 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in phage experiments

For phage 8C2_phage across organisms