Experiment set3IT071 for Agrobacterium fabrum C58

Compare to:

L-Methionine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0039 -4.6 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu0678 -4.5 -9.0 histidyl-tRNA synthetase compare
Atu3706 -4.3 -11.6 D-3-phosphoglycerate dehydrogenase compare
Atu3469 -4.1 -3.9 phosphoglyceromutase compare
Atu3707 -4.0 -4.5 phosphoserine aminotransferase compare
Atu2790 -4.0 -3.8 3-isopropylmalate dehydratase, small subunit compare
Atu1688 -3.9 -10.2 indole-3-glycerol-phosphate synthase compare
Atu1030 -3.9 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2040 -3.8 -8.0 phosphoserine phosphatase compare
Atu1687 -3.8 -10.7 anthranilate phosphoribosyltransferase compare
Atu0017 -3.7 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2791 -3.5 -9.8 3-isopropylmalate dehydrogenase compare
Atu0537 -3.4 -9.5 histidinol dehydrogenase compare
Atu0035 -3.3 -11.1 phosphoenolpyruvate carboxykinase compare
Atu1750 -3.3 -7.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu3740 -3.3 -12.0 fructose bisphosphate aldolase compare
Atu2650 -3.2 -15.5 glycerol-3-phosphate dehydrogenase compare
Atu2036 -3.2 -16.4 acetolactate synthase III, large subunit compare
Atu2289 -3.2 -17.2 anthranilate synthase component I and II compare
Atu0679 -3.2 -5.9 ATP phosphoribosyltransferase compare
Atu0043 -3.2 -4.7 imidazoleglycerol-phosphate dehydratase compare
Atu0041 -3.1 -3.1 glutamine amidotransferase compare
Atu2709 -3.0 -16.1 3-isopropylmalate dehydratase, large subunit compare
Atu0486 -3.0 -6.7 dihydroorotate dehydrogenase compare
Atu3739 -3.0 -4.8 phosphoglycerate kinase compare
Atu1850 -2.9 -5.7 phosphoribosylformylglycinamidine synthetase II compare
Atu1359 -2.8 -2.0 dnaK deletion suppressor protein compare
Atu0099 -2.8 -10.5 prephenate dehydratase compare
Atu0399 -2.7 -8.3 dihydroorotase compare
Atu1844 -2.7 -5.4 Phosphoribosylformylglycinamidine synthetase compare
Atu2264 -2.7 -10.7 2-isopropylmalate synthase compare
Atu1845 -2.6 -7.0 phosphoribosylformylglycinamidine synthase I compare
Atu1307 -2.6 -9.1 dihydroorotase compare
Atu4505 -2.6 -10.8 LacI family transcriptional regulator compare
Atu0400 -2.5 -7.1 orotate phosphoribosyltransferase compare
Atu0030 -2.4 -2.4 phosphocarrier protein HPr compare
Atu3754 -2.4 -8.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0038 -2.4 -5.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0298 -2.3 -7.4 orotidine 5 compare
Atu1620 -2.3 -12.2 triosephosphate isomerase compare
Atu0647 -2.2 -7.0 phosphoribosylamine--glycine ligase compare
Atu5540 -2.2 -0.9 hypothetical protein compare
Atu4896 -2.2 -2.1 acetyltransferase compare
Atu3885 -2.2 -8.8 inositol monophosphatase compare
Atu1140 -2.1 -6.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1075 -2.1 -7.8 amidophosphoribosyltransferase compare
Atu1308 -2.1 -7.4 aspartate carbamoyl transferase catalytic subunit compare
Atu0332 -2.1 -10.1 RNA polymerase sigma-54 factor compare
Atu0040 -2.1 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1141 -2.1 -6.6 Phosphoribosylglycinamide synthetase compare
Atu1446 -1.9 -2.9 two component response regulator compare
Atu0346 -1.9 -2.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4773 -1.8 -2.8 two component response regulator compare
Atu4618 -1.8 -10.6 dTDP-rhamnose-3,5-epimerase compare
Atu2207 -1.8 -2.8 two component sensor kinase compare
Atu1364 -1.7 -7.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4615 -1.7 -9.7 glucose-1-phosphate thymidylyltransferase compare
Atu4613 -1.6 -11.6 glycosyltransferase compare
Atu5501 -1.6 -1.5 hypothetical protein compare
Atu4711 -1.6 -5.5 two component sensor kinase compare
Atu2183 -1.6 -6.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4617 -1.5 -9.6 dTDP-D-glucose-4,6-dehydratase compare
Atu3012 -1.4 -1.4 hypothetical protein compare
Atu4614 -1.4 -7.8 glycosyltransferase compare
Atu1445 -1.4 -5.1 two component sensor kinase compare
Atu1714 -1.4 -2.2 exonuclease III compare
Atu3353 -1.3 -8.8 mannose-1-phosphate guanylyltransferase compare
Atu3482 -1.3 -8.2 pantoate--beta-alanine ligase compare
Atu3311 -1.3 -9.6 phosphomannose isomerase compare
Atu2115 -1.3 -7.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu3783 -1.3 -9.6 glutamate synthase subunit beta compare
Atu1588 -1.3 -7.1 homoserine dehydrogenase compare
Atu3755 -1.3 -5.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4166 -1.2 -1.2 UDP-glucose 4-epimerase compare
Atu0654 -1.2 -5.5 transcriptional regulator, LysR family compare
Atu0361 -1.2 -3.0 transcriptional regulator compare
Atu1464 -1.2 -3.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu4616 -1.2 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu8203 -1.2 -1.4 hypothetical protein compare
Atu2249 -1.2 -1.4 hypothetical protein compare
Atu4173 -1.2 -2.9 phosphoenolpyruvate-protein phosphotransferase compare
Atu3784 -1.2 -10.5 glutamate synthase large subunit compare
Atu2376 -1.1 -1.1 hypothetical protein compare
Atu8087 -1.1 -1.4 putative peptidoglycan binding protein compare
Atu3730 -1.1 -1.2 hypothetical protein compare
Atu0871 -1.1 -5.3 branched-chain-amino-acid aminotransferase compare
Atu3468 -1.1 -1.1 hypothetical protein compare
Atu3120 -1.1 -1.7 hypothetical protein compare
Atu1439 -1.0 -2.3 hypothetical protein compare
Atu5186 -1.0 -1.3 hypothetical protein compare
Atu2035 -1.0 -5.3 acetolactate synthase, small subunit compare
Atu5475 -1.0 -1.1 hypothetical protein compare
Atu8118 -0.9 -5.3 putative universal stress protein compare
Atu0422 -0.9 -1.8 ABC transporter, membrane spanning protein compare
Atu3908 -0.9 -6.5 GntR family transcriptional regulator compare
Atu1463 -0.9 -3.4 glycine cleavage system component H compare
Atu1462 -0.9 -6.5 glycine cleavage system protein P2 compare
Atu0837 -0.9 -4.0 transcriptional regulator, MarR family compare
Atu0079 -0.9 -5.4 Atu0079-1 mutant of pfkB family carbohydrate kinase compare
Atu5517 -0.9 -1.2 hypothetical protein compare
Atu8056 -0.9 -1.2 hypothetical protein compare
Atu5115 -0.9 -0.9 hypothetical protein compare
Atu0895 -0.9 -2.6 ABC transporter, substrate binding protein compare
Atu0107 -0.9 -1.2 hypothetical protein compare
Atu1774 -0.9 -4.4 ABC transporter, substrate binding protein (peptide) compare
Atu3293 -0.9 -4.1 D-amino acid dehydrogenase small subunit compare
Atu5034 -0.9 -1.4 hypothetical protein compare
Atu5489 -0.8 -1.4 hypothetical protein compare
Atu0677 -0.8 -1.9 hypothetical protein compare
Atu0029 -0.8 -3.9 S-adenosylhomocysteine hydrolase compare
Atu5430 -0.8 -0.5 hypothetical protein compare
Atu2293 -0.8 -1.3 hypothetical protein compare
Atu2015 -0.8 -5.5 aminotransferase compare
Atu3008 -0.8 -0.8 hypothetical protein compare
Atu2427 -0.8 -4.9 ABC transporter, membrane spanning protein compare
Atu0529 -0.8 -4.1 aspartate transaminase compare
Atu5077 -0.8 -2.2 hypothetical protein compare
Atu3483 -0.7 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1103 -0.7 -2.9 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0769 -0.7 -1.0 protoheme IX farnesyltransferase compare
Atu1589 -0.7 -3.3 aminotransferase, class I compare
Atu3461 -0.7 -2.1 GntR family transcriptional regulator compare
Atu5173 -0.7 -1.0 dehydrogenase compare
Atu5046 -0.7 -1.2 hypothetical protein compare
Atu1573 -0.7 -1.4 hypothetical protein compare
Atu5513 -0.7 -0.7 cold shock protein compare
Atu4702 -0.7 -3.6 GntR family transcriptional regulator compare
Atu2747 -0.7 -5.0 hypothetical protein compare
Atu1810 -0.7 -1.2 hypothetical protein compare
Atu6020 -0.7 -1.4 conserved hypothetical protein compare
Atu1028 -0.7 -1.9 hypothetical protein compare
Atu2425 -0.6 -3.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu3910 -0.6 -3.4 LamB/YcsF family protein compare
Atu0190 -0.6 -3.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2800 -0.6 -1.5 precorrin-3B C17-methyltransferase compare
Atu2439 -0.6 -1.0 hypothetical protein compare
Atu8088 -0.6 -1.5 hypothetical protein compare
Atu1970 -0.6 -1.4 hypothetical protein compare
Atu4608 -0.6 -5.0 hypothetical protein compare
Atu3567 -0.6 -2.6 hypothetical protein compare
Atu3028 -0.6 -3.5 hypothetical protein compare
Atu4888 -0.6 -2.7 hypothetical protein compare
Atu3014 -0.6 -1.1 hypothetical protein compare
Atu3554 -0.6 -1.9 hypothetical protein compare
Atu0413 -0.6 -0.8 stress induced protein compare
Atu4161 -0.6 -1.1 hypothetical protein compare
Atu1149 -0.6 -1.2 adenylate cyclase compare
Atu6040 -0.6 -1.6 conjugal transfer protein compare
Atu3024 -0.6 -4.2 sugar ABC transporter permease compare
Atu3001 -0.6 -1.1 hypothetical protein compare
Atu4346 -0.6 -2.4 hypothetical protein compare
Atu2017 -0.6 -0.5 hypothetical protein compare
Atu3912 -0.6 -3.5 hypothetical protein compare
Atu8093 -0.6 -2.7 hypothetical protein compare
Atu6042 -0.6 -2.4 autoinducer synthesis protein compare
Atu3017 -0.6 -0.7 phosphoglyceromutase compare
Atu0419 -0.6 -1.3 two component sensor kinase compare
Atu1766 -0.6 -2.2 hypothetical protein compare
Atu4877 -0.6 -3.9 short-chain dehydrogenase compare
Atu2802 -0.6 -2.6 precorrin-8X methylmutase compare
Atu1070 -0.6 -2.6 hypothetical protein compare
Atu5152 -0.5 -1.3 hypothetical protein compare
Atu0375 -0.5 -1.6 small heat shock protein compare
Atu6152 -0.5 -2.7 transposase compare
Atu4217 -0.5 -1.4 TetR family transcriptional regulator compare
Atu4879 -0.5 -3.0 hypothetical protein compare
Atu4873 -0.5 -2.5 TetR family transcriptional regulator compare
Atu4854 -0.5 -2.3 hypothetical protein compare
Atu6081 -0.5 -2.0 conserved hypothetical protein compare
Atu0188 -0.5 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu2428 -0.5 -3.5 exopolysaccharide production protein PssB compare
Atu2472 -0.5 -1.1 hypothetical protein compare
Atu8177 -0.5 -1.1 hypothetical protein compare
Atu2710 -0.5 -2.7 hypothetical protein compare
Atu0377 -0.5 -2.2 hypothetical protein compare
Atu4889 -0.5 -2.5 hypothetical protein compare
Atu6119 -0.5 -1.3 conserved hypothetical protein compare
Atu4792 -0.5 -0.7 hypothetical protein compare
Atu3015 -0.5 -2.4 hypothetical protein compare
Atu4144 -0.5 -0.8 hypothetical protein compare
Atu1578 -0.5 -2.8 ABC transporter, membrane spanning protein (amino acid) compare
Atu3006 -0.5 -1.9 hypothetical protein compare
Atu8115 -0.5 -2.9 Hypothetical Protein compare
Atu3215 -0.5 -2.5 oligopeptide ABC transporter ATPase compare
Atu2424 -0.5 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu5471 -0.5 -0.8 hypothetical protein compare
Atu1686 -0.5 -4.0 peptidyl-prolyl cis-trans isomerse D compare
Atu4866 -0.5 -3.1 hypothetical protein compare
Atu4894 -0.5 -2.8 transposase compare
Atu0690 -0.5 -1.0 hypothetical protein compare
Atu3429 -0.5 -0.9 hypothetical protein compare
Atu1163 -0.5 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0538 -0.5 -1.2 hypothetical protein compare
Atu0971 -0.5 -2.0 two component sensor kinase compare
Atu3799 -0.5 -3.5 GntR family transcriptional regulator compare
Atu3663 -0.5 -0.9 hypothetical protein compare
Atu5429 -0.5 -1.6 transcriptional regulator compare
Atu5064 -0.5 -2.0 MarR family transcriptional regulator compare
Atu6114 -0.5 -0.8 hypothetical protein compare
Atu4469 -0.5 -1.5 iron ABC transporter permease compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Methionine in Agrobacterium fabrum C58

For nitrogen source L-Methionine across organisms