Experiment set3IT070 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

200 most important genes:

  gene name fitness t score description  
GFF2690 -2.4 -2.7 Peptide transport system permease protein SapC compare
GFF2689 -2.4 -3.9 Peptide transport system permease protein SapB compare
GFF3264 -2.4 -1.4 hypothetical protein compare
GFF4655 -2.3 -3.7 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1747 -2.2 -2.2 putative inner membrane protein compare
GFF4270 -2.2 -1.0 FIG00637869: hypothetical protein compare
GFF2389 -2.0 -2.3 Trk system potassium uptake protein TrkA compare
GFF2692 -2.0 -4.0 Peptide transport system ATP-binding protein SapF compare
GFF2946 -1.9 -4.5 RNA polymerase sigma-54 factor RpoN compare
GFF2028 -1.8 -1.9 Type III secretion and flagellar regulator RtsA compare
GFF3502 -1.7 -1.1 PTS system, cellobiose-specific IIB component (EC 2.7.1.69) compare
GFF3748 -1.7 -1.1 FIG002927: hypothetical protein compare
GFF2948 -1.6 -4.6 PTS system nitrogen-specific IIA component, PtsN compare
GFF276 -1.6 -4.3 Potassium uptake protein TrkH compare
GFF1334 -1.5 -1.2 Uncharacterized protein YohL compare
GFF121 -1.5 -3.2 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3528 -1.5 -2.7 Integration host factor alpha subunit compare
GFF4459 -1.5 -3.9 Mobile element protein compare
GFF2539 -1.5 -2.0 putative phage-related secreted protein compare
GFF2621 -1.5 -1.5 FIG01045328: hypothetical protein compare
GFF125 -1.5 -2.1 hypothetical protein compare
GFF1383 -1.4 -2.4 FIG00639790: hypothetical protein compare
GFF2536 -1.4 -2.6 RidA/YER057c/UK114 superfamily, group 7, YjgH-like protein compare
GFF4830 -1.4 -1.3 hypothetical protein compare
GFF792 -1.4 -0.9 hypothetical protein compare
GFF3990 -1.4 -1.5 hypothetical protein compare
GFF2470 -1.3 -1.3 4Fe-4S ferredoxin, iron-sulfur binding compare
GFF1076 -1.3 -2.3 Aerobic respiration control protein arcA compare
GFF4417 -1.3 -2.3 Methionine ABC transporter ATP-binding protein compare
GFF2434 -1.3 -0.7 Iron-sulfur cluster assembly scaffold protein IscU compare
GFF3823 -1.3 -4.1 Hypothetical lipoprotein yehR compare
GFF3315 -1.3 -1.3 Putative oxidoreductase component of anaerobic dehydrogenases; Functional role page for Chaperone protein TorD compare
GFF1750 -1.3 -3.0 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF3577 -1.3 -1.1 FIG00637899: hypothetical protein compare
GFF3888 -1.2 -2.4 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF122 -1.2 -5.6 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF4342 -1.2 -3.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF3986 -1.2 -3.3 FIG01220476: hypothetical protein compare
GFF3321 -1.2 -1.2 Minor curlin subunit CsgB, nucleation component of curlin monomers compare
GFF309 -1.2 -1.3 Putative transcriptional regulator of unknown carbohydrate utilization cluster, GntR family compare
GFF4733 -1.2 -0.8 Type III secretion transcriptional regulator HilC (= SirC) compare
GFF55 -1.2 -5.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF1259 -1.2 -2.9 Error-prone repair protein UmuD compare
GFF761 -1.2 -1.3 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
GFF4457 -1.2 -4.3 Fimbriae W protein compare
GFF4145 -1.1 -1.1 hypothetical protein compare
GFF3737 -1.1 -2.0 Phage antitermination protein Q compare
GFF3905 -1.1 -5.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
GFF1678 -1.1 -1.8 Ferritin-like protein 2 compare
GFF2758 -1.1 -1.2 FIG01045187: hypothetical protein compare
GFF1600 -1.1 -2.1 HAD-superfamily hydrolase, subfamily IA compare
GFF1554 -1.1 -1.9 Putative transcriptional regulator compare
GFF2873 -1.1 -0.8 hypothetical protein compare
GFF3377 -1.1 -3.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) compare
GFF4535 -1.1 -4.6 Lipid A acylation protein PagP, palmitoyltransferase compare
GFF3943 -1.1 -0.9 Propanediol dehydratase small subunit (EC 4.2.1.28) compare
GFF4343 -1.1 -2.2 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
GFF4621 -1.1 -1.3 putative inner membrane protein compare
GFF2990 -1.1 -3.9 Thiol:disulfide interchange protein DsbC compare
GFF2867 -1.1 -1.1 hypothetical protein compare
GFF2729 -1.1 -0.8 Protein YciE compare
GFF4345 -1.1 -5.4 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF4460 -1.0 -1.9 Putative inner membrane protein compare
GFF2954 -1.0 -5.3 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF1691 -1.0 -3.8 Flagellar biosynthesis protein FliZ compare
GFF1219 -1.0 -2.0 FIG01048676: hypothetical protein compare
GFF1985 -1.0 -2.0 tRNA-Ala-GGC compare
GFF2906 -1.0 -2.7 Protein yifE compare
GFF4615 -1.0 -1.1 FIG137478: Hypothetical protein YbgI compare
GFF4232 -1.0 -2.5 Putative fimbrial chaperone compare
GFF1981 -1.0 -1.0 FIG00638165: hypothetical protein compare
GFF2573 -1.0 -1.9 N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118) compare
GFF3621 -1.0 -2.9 Glutaredoxin-related protein compare
GFF1163 -1.0 -2.2 IncF plasmid conjugative transfer protein TraR compare
GFF3370 -1.0 -1.6 COG1399 protein, clustered with ribosomal protein L32p compare
GFF648 -1.0 -3.9 Phosphoglycerate mutase (EC 5.4.2.1) compare
GFF1760 -0.9 -2.4 Putative permease compare
GFF2540 -0.9 -2.2 FIG01046001: hypothetical protein compare
GFF2768 -0.9 -0.9 Cation transport regulator chaB compare
GFF4596 -0.9 -1.4 Ferric uptake regulation protein FUR compare
GFF740 -0.9 -2.7 Putative LysR family transcriptional regulator compare
GFF1283 -0.9 -3.1 Phage capsid and scaffold compare
GFF4346 -0.9 -4.1 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF3743 -0.9 -2.5 FIG01046717: hypothetical protein compare
GFF103 -0.9 -4.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
GFF2394 -0.9 -1.6 Protein of unknown function Smg compare
GFF4004 -0.9 -1.7 DsrB protein compare
GFF2994 -0.9 -1.1 YgfY COG2938 compare
GFF4892 -0.9 -2.0 Thioredoxin reductase (EC 1.8.1.9) compare
GFF1813 -0.9 -1.2 Cnu protein compare
GFF2748 -0.9 -1.4 Putative membrane protein compare
GFF975 -0.9 -2.3 FIG074102: hypothetical protein compare
GFF4106 -0.9 -2.8 Protein with similarity to RtcB compare
GFF2145 -0.9 -0.7 probable ribonuclease inhibitor YPO3690 compare
GFF1472 -0.9 -1.4 Transcriptional regulator of catabolic arginine decarboxylase (adiA) compare
GFF1385 -0.9 -0.9 hypothetical protein compare
GFF573 -0.9 -0.9 FIG01046423: hypothetical protein compare
GFF3826 -0.9 -1.4 FIG00510335: hypothetical protein compare
GFF4745 -0.9 -0.8 secretion chaparone compare
GFF1983 -0.9 -1.3 tRNA-Arg-CCT compare
GFF3538 -0.9 -0.8 hypothetical protein compare
GFF2664 -0.9 -1.2 FIG01200701: possible membrane protein compare
GFF992 -0.9 -1.3 hypothetical protein compare
GFF4806 -0.8 -0.8 FIG01045727: hypothetical protein compare
GFF2907 -0.8 -4.3 HTH-type transcriptional regulator hdfR compare
GFF2245 -0.8 -2.2 Sea40 compare
GFF1338 -0.8 -2.6 Putative outer membrane protein compare
GFF4454 -0.8 -0.8 Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family) compare
GFF645 -0.8 -0.8 Membrane protein associated with oxaloacetate decarboxylase compare
GFF4844 -0.8 -2.8 FIG01046344: hypothetical protein compare
GFF1194 -0.8 -2.6 DNA replication protein compare
GFF3999 -0.8 -4.3 Putative inner membrane protein compare
GFF2469 -0.8 -0.8 Transcriptional regulator, LysR family compare
GFF255 -0.8 -1.5 hypothetical protein compare
GFF1921 -0.8 -1.6 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-) compare
GFF1541 -0.8 -1.4 Flagellar synthesis: repressor of fliC compare
GFF796 -0.8 -1.6 Phage outer membrane lytic protein Rz; Endopeptidase (EC 3.4.-.-) compare
GFF4344 -0.8 -2.7 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
GFF2477 -0.8 -2.8 Translation elongation factor LepA compare
GFF3928 -0.8 -3.4 Propionate kinase, propanediol utilization (EC 2.7.2.1) compare
GFF1207 -0.8 -2.9 Probable regulatory protein compare
GFF3712 -0.8 -1.7 Cyclic AMP receptor protein compare
GFF4234 -0.8 -1.1 Possible transmembrane regulator compare
GFF3580 -0.8 -2.2 Transcriptional regulator, MerR family, associated with photolyase compare
GFF456 -0.8 -1.0 hypothetical protein compare
GFF2201 -0.8 -2.1 putative DNA-binding protein compare
GFF3706 -0.8 -0.8 Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8) compare
GFF2433 -0.8 -3.7 Iron binding protein IscA for iron-sulfur cluster assembly compare
GFF3409 -0.8 -1.3 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
GFF3230 -0.8 -0.5 Transposase compare
GFF437 -0.8 -2.8 Electron transport protein HydN compare
GFF2526 -0.8 -1.4 hypothetical protein compare
GFF2148 -0.8 -1.8 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
GFF197 -0.8 -1.7 Probable secreted protein compare
GFF218 -0.8 -1.1 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.61) compare
GFF2431 -0.8 -2.4 Chaperone protein HscA compare
GFF1673 -0.7 -1.3 Flagellar transcriptional activator FlhD compare
GFF1901 -0.7 -2.1 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF1363 -0.7 -1.5 hypothetical protein compare
GFF4109 -0.7 -2.1 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) compare
GFF1934 -0.7 -2.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF4761 -0.7 -2.4 Type III secretion system protein BsaR compare
GFF1005 -0.7 -1.3 FIG00638610: hypothetical protein compare
GFF2098 -0.7 -1.7 Thioredoxin 2 (EC 1.8.1.8) compare
GFF219 -0.7 -3.0 Citrate lyase alpha chain (EC 4.1.3.6) compare
GFF2862 -0.7 -1.4 FIG01046381: hypothetical protein compare
GFF451 -0.7 -2.1 Mobile element protein compare
GFF3255 -0.7 -2.7 UPF0319 protein YccT precursor compare
GFF4036 -0.7 -1.4 tRNA-Ser-CGA compare
GFF4484 -0.7 -3.7 Transcriptional regulator, TetR family compare
GFF1805 -0.7 -1.7 DNA replication terminus site-binding protein compare
GFF2858 -0.7 -0.9 G-nucleotide exchange factor SopE compare
GFF1885 -0.7 -3.0 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF4861 -0.7 -0.8 L-fucose mutarotase compare
GFF482 -0.7 -1.1 FIG01047459: hypothetical protein compare
GFF339 -0.7 -3.1 YqeJ protein compare
GFF3781 -0.7 -1.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF2889 -0.7 -4.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
GFF2845 -0.7 -1.7 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF2864 -0.7 -0.9 Mobile element protein compare
GFF2982 -0.7 -1.3 hypothetical protein compare
GFF778 -0.7 -0.7 Mobile element protein compare
GFF4118 -0.7 -1.0 tRNA-Thr-CGT compare
GFF2341 -0.7 -5.6 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
GFF4549 -0.7 -1.7 LSU m3Psi1915 methyltransferase RlmH compare
GFF4643 -0.7 -0.8 hypothetical protein compare
GFF3569 -0.7 -1.1 Proline iminopeptidase (EC 3.4.11.5) compare
GFF4058 -0.7 -1.3 Putative cytoplasmic protein USSDB7A compare
GFF2269 -0.7 -1.0 hypothetical protein compare
GFF2861 -0.7 -2.1 FIG01045929: hypothetical protein compare
GFF691 -0.7 -2.8 ABC transport system, permease component YbhR compare
GFF3476 -0.7 -1.4 Putative oxidoreductase YeaE, aldo/keto reductase family compare
GFF2528 -0.7 -1.4 Hexuronate utilization operon transcriptional repressor ExuR compare
GFF4738 -0.7 -1.4 Type III secretion system protein compare
GFF3877 -0.7 -1.1 GDP-mannose mannosyl hydrolase (EC 3.6.1.-) compare
GFF1532 -0.7 -2.1 Transcriptional repressor of aga operon compare
GFF873 -0.6 -0.7 hypothetical protein compare
GFF3323 -0.6 -0.8 Putative curli production protein CsgC compare
GFF1435 -0.6 -0.8 Agglutination protein compare
GFF3258 -0.6 -2.3 LSU m5C1962 methyltransferase RlmI compare
GFF1863 -0.6 -0.7 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF741 -0.6 -2.1 D-beta-hydroxybutyrate permease compare
GFF1900 -0.6 -2.3 Acetate kinase (EC 2.7.2.1) compare
GFF739 -0.6 -1.6 Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) compare
GFF2838 -0.6 -1.0 Cold shock protein CspC compare
GFF4834 -0.6 -2.7 Nucleoside triphosphate pyrophosphohydrolase MazG (EC 3.6.1.8) compare
GFF3153 -0.6 -2.1 hypothetical protein compare
GFF2031 -0.6 -0.7 FIG01046611: hypothetical protein compare
GFF1597 -0.6 -4.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
GFF2040 -0.6 -1.2 FIG074102: hypothetical protein compare
GFF4749 -0.6 -2.3 Type III secretion host injection protein (YopB) compare
GFF4561 -0.6 -1.6 FIG002095: hypothetical protein compare
GFF1178 -0.6 -1.0 hypothetical protein compare
GFF4061 -0.6 -0.5 putative periplasmic protein compare
GFF3062 -0.6 -2.3 FIG004016: Uncharacterized protein YggN compare
GFF3308 -0.6 -1.6 Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase compare
GFF2517 -0.6 -0.5 [NiFe] hydrogenase nickel incorporation HybF-like protein compare
GFF270 -0.6 -1.7 Possible transferase compare
GFF513 -0.6 -3.8 Glutathione reductase (EC 1.8.1.7) compare
GFF2688 -0.6 -1.5 Peptide transport periplasmic protein SapA compare


Specific Phenotypes

For 2 genes in this experiment

For phage FelixO1_phage (LP_new) in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

For phage FelixO1_phage (LP_new) across organisms