Experiment set3IT063 for Agrobacterium fabrum C58

Compare to:

L-Isoleucine nitrogen source

200 most important genes:

  gene name fitness t score description  
Atu0039 -4.6 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu0041 -4.4 -4.2 glutamine amidotransferase compare
Atu0043 -4.0 -4.7 imidazoleglycerol-phosphate dehydratase compare
Atu1030 -4.0 -3.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0537 -3.9 -9.4 histidinol dehydrogenase compare
Atu0678 -3.8 -8.0 histidyl-tRNA synthetase compare
Atu2040 -3.7 -6.1 phosphoserine phosphatase compare
Atu1359 -3.6 -2.1 dnaK deletion suppressor protein compare
Atu3706 -3.2 -10.5 D-3-phosphoglycerate dehydrogenase compare
Atu0679 -3.2 -8.8 ATP phosphoribosyltransferase compare
Atu0035 -3.1 -11.0 phosphoenolpyruvate carboxykinase compare
Atu3707 -3.1 -4.0 phosphoserine aminotransferase compare
Atu1750 -3.0 -9.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1687 -3.0 -13.9 anthranilate phosphoribosyltransferase compare
Atu2790 -3.0 -3.3 3-isopropylmalate dehydratase, small subunit compare
Atu2289 -2.9 -17.7 anthranilate synthase component I and II compare
Atu3469 -2.8 -4.6 phosphoglyceromutase compare
Atu2036 -2.8 -13.5 acetolactate synthase III, large subunit compare
Atu1688 -2.7 -9.7 indole-3-glycerol-phosphate synthase compare
Atu2709 -2.6 -15.6 3-isopropylmalate dehydratase, large subunit compare
Atu0017 -2.6 -4.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2791 -2.5 -9.4 3-isopropylmalate dehydrogenase compare
Atu1307 -2.5 -5.6 dihydroorotase compare
Atu2264 -2.5 -13.4 2-isopropylmalate synthase compare
Atu0400 -2.4 -7.2 orotate phosphoribosyltransferase compare
Atu1620 -2.4 -12.6 triosephosphate isomerase compare
Atu0399 -2.4 -7.4 dihydroorotase compare
Atu4166 -2.3 -4.5 UDP-glucose 4-epimerase compare
Atu2650 -2.2 -12.3 glycerol-3-phosphate dehydrogenase compare
Atu4616 -2.2 -2.9 dTDP-4-dehydrorhamnose reductase compare
Atu1446 -2.2 -3.8 two component response regulator compare
Atu3740 -2.2 -8.3 fructose bisphosphate aldolase compare
Atu1308 -2.1 -5.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0486 -1.9 -6.6 dihydroorotate dehydrogenase compare
Atu0040 -1.9 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu6098 -1.9 -0.8 transcriptional regulator, HTH family compare
Atu8054 -1.9 -0.8 hypothetical protein compare
Atu4505 -1.9 -10.0 LacI family transcriptional regulator compare
Atu1075 -1.9 -8.8 amidophosphoribosyltransferase compare
Atu6114 -1.7 -1.6 hypothetical protein compare
Atu1845 -1.7 -5.3 phosphoribosylformylglycinamidine synthase I compare
Atu0432 -1.6 -7.3 O-succinylhomoserine sulfhydrylase compare
Atu3754 -1.6 -8.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0332 -1.6 -9.1 RNA polymerase sigma-54 factor compare
Atu4773 -1.6 -2.9 two component response regulator compare
Atu0298 -1.6 -6.7 orotidine 5 compare
Atu2684 -1.6 -1.9 hypothetical protein compare
Atu3739 -1.5 -2.9 phosphoglycerate kinase compare
Atu3755 -1.5 -4.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1850 -1.5 -3.5 phosphoribosylformylglycinamidine synthetase II compare
Atu3885 -1.5 -8.0 inositol monophosphatase compare
Atu2015 -1.5 -8.0 aminotransferase compare
Atu4711 -1.4 -6.7 two component sensor kinase compare
Atu1141 -1.4 -4.5 Phosphoribosylglycinamide synthetase compare
Atu0647 -1.4 -6.7 phosphoribosylamine--glycine ligase compare
Atu2718 -1.4 -5.5 homoserine O-succinyltransferase compare
Atu2183 -1.3 -8.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0723 -1.3 -2.1 FAD dependent oxidoreductase compare
Atu0038 -1.3 -4.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1844 -1.3 -2.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0871 -1.3 -6.9 branched-chain-amino-acid aminotransferase conserved
Atu3353 -1.2 -7.5 mannose-1-phosphate guanylyltransferase compare
Atu2376 -1.2 -1.4 hypothetical protein compare
Atu0026 -1.2 -1.4 hypothetical protein compare
Atu1140 -1.2 -3.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0490 -1.2 -5.1 hypothetical protein compare
Atu0837 -1.2 -3.7 transcriptional regulator, MarR family compare
Atu0422 -1.2 -2.7 ABC transporter, membrane spanning protein compare
Atu1163 -1.1 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4614 -1.1 -6.4 glycosyltransferase compare
Atu2115 -1.1 -6.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2155 -1.1 -8.7 methionine synthase compare
Atu4217 -1.1 -1.8 TetR family transcriptional regulator compare
Atu3496 -1.1 -4.1 hypothetical protein compare
Atu5540 -1.0 -0.6 hypothetical protein compare
Atu0876 -1.0 -2.5 superoxide dismutase compare
Atu3311 -1.0 -7.6 phosphomannose isomerase compare
Atu0524 -1.0 -4.8 transcriptional regulator, LuxR family compare
Atu4613 -1.0 -7.2 glycosyltransferase compare
Atu0977 -1.0 -3.0 serine protease DO-like protease compare
Atu1774 -1.0 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu4617 -1.0 -6.3 dTDP-D-glucose-4,6-dehydratase compare
Atu4618 -0.9 -6.6 dTDP-rhamnose-3,5-epimerase compare
Atu3298 -0.9 -7.1 C4-dicarboxylate transporter DctA compare
Atu4615 -0.9 -6.2 glucose-1-phosphate thymidylyltransferase compare
Atu2123 -0.9 -3.6 methylenetetrahydrofolate reductase compare
Atu0346 -0.9 -1.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu5167 -0.9 -3.0 type IV secretion protein AvhB6 compare
Atu2757 -0.9 -2.8 nitrogen regulatory protein PII compare
Atu3296 -0.8 -4.8 two component response regulator for C4-dicarboxylate transport compare
Atu1573 -0.8 -1.6 hypothetical protein compare
Atu1588 -0.8 -5.7 homoserine dehydrogenase compare
Atu0525 -0.8 -2.3 transcriptional regulator, LuxR family compare
Atu2747 -0.8 -4.6 hypothetical protein compare
Atu0690 -0.8 -1.5 hypothetical protein compare
Atu0099 -0.8 -6.1 prephenate dehydratase compare
Atu5088 -0.8 -1.0 hypothetical protein compare
Atu1456 -0.8 -4.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2207 -0.8 -2.1 two component sensor kinase compare
Atu0119 -0.8 -1.1 hypothetical protein compare
Atu2057 -0.8 -1.6 DNA helicase II compare
Atu2462 -0.8 -1.7 hypothetical protein compare
Atu1028 -0.7 -2.3 hypothetical protein compare
Atu8162 -0.7 -1.5 hypothetical protein compare
Atu0190 -0.7 -4.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu8087 -0.7 -1.1 putative peptidoglycan binding protein compare
Atu2200 -0.7 -1.5 cold shock protein compare
Atu1570 -0.7 -0.8 hypothetical protein compare
Atu5109 -0.7 -2.1 conjugal transfer protein compare
Atu0912 -0.7 -0.8 Na+/H+ antiporter compare
Atu1354 -0.7 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2083 -0.7 -3.1 DNA repair protein RecN compare
Atu2267 -0.7 -3.3 hypothetical protein compare
Atu1445 -0.7 -2.6 two component sensor kinase compare
Atu2808 -0.7 -3.5 cobyric acid synthase compare
Atu1457 -0.7 -1.5 hypothetical protein compare
Atu5145 -0.7 -1.0 acetyltransferase compare
Atu3120 -0.7 -0.9 hypothetical protein compare
Atu3327 -0.7 -2.8 succinoglycan exopolysaccharide synthesis protein compare
Atu3044 -0.6 -3.0 asparaginase compare
Atu4055 -0.6 -3.0 endo-1,3-1,4-beta-glycanase compare
Atu3619 -0.6 -1.3 hypothetical protein compare
Atu3297 -0.6 -4.5 two component sensor kinase for C4-dicarboxylate transport compare
Atu0544 -0.6 -1.0 hypothetical protein compare
Atu1737 -0.6 -1.6 hypothetical protein compare
Atu3727 -0.6 -2.0 hypothetical protein compare
Atu2249 -0.6 -0.9 hypothetical protein compare
Atu2796 -0.6 -2.4 precorrin-4 C11-methyltransferase compare
Atu5429 -0.6 -1.6 transcriptional regulator compare
Atu5155 -0.6 -1.7 MarR family transcriptional regulator compare
Atu8032 -0.6 -1.8 hypothetical protein compare
Atu1629 -0.6 -0.9 transcriptional regulator, ArsR family compare
Atu1810 -0.6 -0.9 hypothetical protein compare
Atu0361 -0.6 -1.2 transcriptional regulator compare
Atu1464 -0.6 -3.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu8088 -0.6 -1.0 hypothetical protein compare
Atu4173 -0.6 -1.7 phosphoenolpyruvate-protein phosphotransferase compare
Atu1062 -0.6 -1.2 phosphatidylserine synthase compare
Atu6156 -0.6 -1.8 virA/G regulated gene compare
Atu8191 -0.6 -1.4 hypothetical protein compare
Atu2795 -0.6 -2.5 cobalamin biosynthetic protein compare
Atu2555 -0.6 -2.1 L-lysine 2,3-aminomutase compare
Atu0893 -0.6 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2807 -0.6 -3.1 cob(I)alamin adenosyltransferase compare
Atu8118 -0.5 -2.6 putative universal stress protein compare
Atu2021 -0.5 -2.5 transcriptional regulator, AraC family compare
Atu5487 -0.5 -1.6 hypothetical protein compare
Atu4077 -0.5 -4.3 glycogen branching protein compare
Atu1503 -0.5 -0.8 hypothetical protein compare
Atu3867 -0.5 -3.2 hypothetical protein compare
Atu2436 -0.5 -2.3 hypothetical protein compare
Atu0188 -0.5 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu3293 -0.5 -2.5 D-amino acid dehydrogenase small subunit compare
Atu2640 -0.5 -2.4 hypothetical protein compare
Atu0769 -0.5 -1.2 protoheme IX farnesyltransferase compare
Atu1302 -0.5 -1.6 hypothetical protein compare
Atu2824 -0.5 -2.4 hypothetical protein compare
Atu0142 -0.5 -2.1 cytochrome o ubiquinol oxidase subunit II compare
Atu1039 -0.5 -2.3 DNA repair protein RecO compare
Atu3482 -0.5 -3.0 pantoate--beta-alanine ligase compare
Atu8047 -0.5 -1.3 hypothetical protein compare
Atu1463 -0.5 -2.7 glycine cleavage system component H compare
Atu2770 -0.5 -3.2 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu5501 -0.5 -0.7 hypothetical protein compare
Atu0846 -0.5 -1.5 transcriptional regulator, MarR family compare
Atu0375 -0.5 -1.3 small heat shock protein compare
Atu5169 -0.5 -1.3 type IV secretion protein AvhB8 compare
Atu5164 -0.5 -0.4 type IV secretion protein AvhB3 compare
Atu3731 -0.5 -2.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu1686 -0.5 -4.0 peptidyl-prolyl cis-trans isomerse D compare
Atu1334 -0.5 -3.4 aspartate transaminase compare
Atu5130 -0.5 -1.8 attachment protein compare
Atu3757 -0.5 -1.0 hypothetical protein compare
Atu5448 -0.5 -1.4 hypothetical protein compare
Atu0886 -0.5 -0.6 hypothetical protein compare
Atu2783 -0.5 -1.6 acetyltransferase compare
Atu0029 -0.5 -2.6 S-adenosylhomocysteine hydrolase compare
Atu2379 -0.5 -3.4 phosphomannomutase compare
Atu3495 -0.5 -3.2 diguanylate cyclase compare
Atu3031 -0.5 -0.8 hypothetical protein compare
Atu5444 -0.5 -1.3 short-chain dehydrogenase compare
Atu1462 -0.5 -3.5 glycine cleavage system protein P2 compare
Atu0601 -0.5 -2.8 oxidoreductase compare
Atu3291 -0.5 -1.8 Lpr family transcriptional regulator compare
Atu8063 -0.5 -0.8 hypothetical protein compare
Atu3075 -0.5 -3.5 TetR family transcriptional regulator compare
Atu3866 -0.5 -3.7 hypothetical protein compare
Atu1358 -0.5 -1.8 hypothetical protein compare
Atu2680 -0.4 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0153 -0.4 -2.4 transcriptional regulator, Fur family compare
Atu2441 -0.4 -1.6 RNA methylase compare
Atu2235 -0.4 -1.2 hypothetical protein compare
Atu1801 -0.4 -1.6 hypothetical protein compare
Atu8115 -0.4 -2.9 Hypothetical Protein compare
Atu1508 -0.4 -2.3 hypothetical protein compare
Atu5173 -0.4 -0.7 dehydrogenase compare
Atu6095 -0.4 -1.7 conserved hypothetical protein compare
Atu0986 -0.4 -0.8 hypothetical protein compare
Atu4053 -0.4 -0.8 succinoglycan biosynthesis protein compare
Atu0953 -0.4 -0.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Isoleucine in Agrobacterium fabrum C58

For nitrogen source L-Isoleucine across organisms